mRNA_Ecto-sp6_S_contig85.17702.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17702.1
Unique NamemRNA_Ecto-sp6_S_contig85.17702.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:701256..702816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size266
Hectar predicted targeting categoryother localisation
Exons3
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350476.822466-CDS-Ecto-sp6_S_contig85:701255..7013391682350476.822466-CDS-Ecto-sp6_S_contig85:701255..701339Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 701256..701339 -
1682350476.8337772-CDS-Ecto-sp6_S_contig85:702448..7025501682350476.8337772-CDS-Ecto-sp6_S_contig85:702448..702550Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 702449..702550 -
1682350476.844042-CDS-Ecto-sp6_S_contig85:702738..7028161682350476.844042-CDS-Ecto-sp6_S_contig85:702738..702816Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 702739..702816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17702.1prot_Ecto-sp6_S_contig85.17702.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 701256..702816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17702.1

>prot_Ecto-sp6_S_contig85.17702.1 ID=prot_Ecto-sp6_S_contig85.17702.1|Name=mRNA_Ecto-sp6_S_contig85.17702.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
VSTVDICESGPVELRRANTASGGMIKSSPCDFKLTIHHTLNNTPFHVIGP
AWGPGKERNEPPTPSNEPAPERCGSRKGGSRRGRRGR*
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mRNA from alignment at Ecto-sp6_S_contig85:701256..702816-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17702.1 ID=mRNA_Ecto-sp6_S_contig85.17702.1|Name=mRNA_Ecto-sp6_S_contig85.17702.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1561bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:701256..702816- (Ectocarpus species6 EcLAC_371)
GTTTCGACGGTGGACATTTGTGAGAGTGGACCTGTAGAACTTCGGCGAGC
GAATACGGCTTCCGGCGGAATGATCAAGGTGTGTGCATTTTCGATTGCTC
TTAGTCCCGCCGCTTCCGGGGATTGTTACACCCGAGTTACCTTTGATTTC
GTGCGATGACACCAGGATACAGCCTGAAACGAGGCACCACGGCTGATGCA
TACATGATTTACGGCTACCCTCCGCTTCCTGTGCTTCCCTATCGTGTGCC
GTCGCCAAACTCTCAGAGCTCCCCGTGTGATTTCAAGCTCACCATACATC
ATACGTTGAATAACACCCCCTTCCATGTCATTGGACCTGCATGGGGGCCA
GGGAAGGAGAGAAACGAGGTGTGAACCACAACTACTTTTGCTAGAGTGAT
GTTGTATGGTAGTATACGAGTGTCCTCCCTCGATTTCGTGACAAAGTTCA
AAGAGGCGGCTTCAACAACGAAAAAATATCATGTGGGAGCTGGCCTGCAG
CAGTAGCATCTCACACCGAATTCACCACGCATTCCGGCCTCCTTAATTAA
TTGTAGGAATAAACGTTTTTGTCTCATTTTTTTGTACGAAGTTGCTCAGG
ATACCTATCCCAAAGTCAGATGCAATGGAATAAGGTATGATCCTCGGCGT
TCCAGAGATATCGGAGCCCCACTACACTTTTTTTTACCGCCAAAAATACC
CCTTTCGGGAGGTTGCATCCAACCAGAAAGTAGCCCGTAGTCACGAGCAC
GGCTAGCAACCCACGCTGGGTTATTTGCATTGGCGGGGCCCGCGAAATAA
AGCTATAGACTGTATCTAGCGTTGTGCAAAACATCGTTCCTGTGCGTTAC
ATCCACGCCGAGAAATGTACATGCATATATATCGCAGCAAAACACCACCG
TTTTGCCGTGGGTACCCCACCCCAGAAGTACCCTCCACTCGCGTGCCAGG
CCACGAGTCCACGCTTGGTTGTTTGAATTGGCGGGCCGTGAATCAAAGGT
CGATGCCATACCTAGGAACGCGCAGAGCGCCGTTGCTACAGGTAAATTTC
ACGCCGAGATATGTACATGCACGTGTATTGGTCCAAAATATATAGGAGTC
ACGAAATATAACACCCCCGGCAATCACCCGTACTGTCGAGCACGGTTACC
AGCCCACGCGTGGTTGTTTGCATCGGCGAGGGCCGCGTATTAAAGGTAAA
GACCATAGCTAGGTGTGAGCAAAACACCATTCTGCTCGTTGTGTCCACGC
CGAGAAATGTGTATATATGTGGATCTCTCCGGCCTATCGTACCGCAGCCA
CGCACGGGTTGGAGGAGACGCCGGGCGGCCTATCCCCGAGATGACCTTCG
ATTTCGGCGTTGGTTTTGACAGTGGTGGTTATCTTGCTGGTTGTTCATTG
TCATATTTGCCTTCACCGTGCCCTTTGTTTATCCTGCTTTGCGCCCTCGT
TGCCTTTACAACCACACCCCCCATCAGCCGCCGACCCCATCGAACGAACC
GGCACCGGAGAGGTGTGGAAGTAGGAAGGGCGGCAGCCGGCGAGGGCGCA
GGGGACGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:701256..702816-

>mRNA_Ecto-sp6_S_contig85.17702.1 ID=mRNA_Ecto-sp6_S_contig85.17702.1|Name=mRNA_Ecto-sp6_S_contig85.17702.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:701256..702816- (Ectocarpus species6 EcLAC_371)
GTTTCGACGGTGGACATTTGTGAGAGTGGACCTGTAGAACTTCGGCGAGC
GAATACGGCTTCCGGCGGAATGATCAAGAGCTCCCCGTGTGATTTCAAGC
TCACCATACATCATACGTTGAATAACACCCCCTTCCATGTCATTGGACCT
GCATGGGGGCCAGGGAAGGAGAGAAACGAGCCGCCGACCCCATCGAACGA
ACCGGCACCGGAGAGGTGTGGAAGTAGGAAGGGCGGCAGCCGGCGAGGGC
GCAGGGGACGGTGA
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