mRNA_Ecto-sp6_S_contig85.17697.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17697.1
Unique NamemRNA_Ecto-sp6_S_contig85.17697.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: A0A6H5KBH3_9PHAE (Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBH3_9PHAE)

HSP 1 Score: 613 bits (1582), Expect = 4.140e-212
Identity = 371/398 (93.22%), Postives = 378/398 (94.97%), Query Frame = 1
Query:  109 MSTPASHGIAGWVVPNANMNVKFNFV-DGRSPPSCSSSVDGVKRLGGRGCNSRKSWSTMSTSTREVIPLSPLSQLRLEEEVEDGLSTQARRPAQTSAFDLPKLVPIEDEDLVFKNHHFAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGE--GAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQVLNSD 1293
            MSTPASHGIAGWVVPNANMNVKF+FV  GRSPPSC S VDGVKRLGGRGCNSRKSW+TMSTSTR+ I LSPLS+LRLEEEVEDGLSTQARRP QTSAFDLP LVPIEDEDL++KNHHFAERANWLVPGKVLLGKYPGQIPADL TGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDD+GMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXX        GAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQVLN D
Sbjct:    1 MSTPASHGIAGWVVPNANMNVKFDFVAGGRSPPSCPSPVDGVKRLGGRGCNSRKSWNTMSTSTRKGIALSPLSRLRLEEEVEDGLSTQARRPTQTSAFDLPNLVPIEDEDLIYKNHHFAERANWLVPGKVLLGKYPGQIPADLTTGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDNGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQVLNRD 398          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: R1BR51_EMIHU (Protein-tyrosine-phosphatase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BR51_EMIHU)

HSP 1 Score: 117 bits (292), Expect = 3.920e-24
Identity = 89/296 (30.07%), Postives = 119/296 (40.20%), Query Frame = 1
Query:  403 LPKLVPIEDEDLVFKNHHFAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSG----FRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQ 1278
            LP L  ++D   V   H     A+WLVPG+VL+G+YPG  P+   T       R+R                 AELPPQ++ + W P      SG   +     F+ YR DA                                                                           EG  F HFPIPD   A++ E L GLV EL      G+V +IHCW GRGRTG++A+CLLG LY  + AE++L RV R       +++ ++   SPET  Q E VR +FK+
Sbjct:  238 LPALCSLDDATAVAAQHACTSFASWLVPGRVLVGRYPGSCPSRPCTAAE---QRER-----------------AELPPQEEAAAWPPGGVAGQSGNAVAPQTARFQPYRADA--------------------------------------------------------------------------PEGAQFLHFPIPDRGVADSPEALDGLVSELSRRALDGQVLYIHCWGGRGRTGMVAACLLGSLYRYVGAEEALQRVQR------CLSLREAGCRSPETEAQVEAVREWFKR 433          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: A0A8J9WNE9_9CHLO (Probable cyclin-dependent kinase inhibitor 3 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNE9_9CHLO)

HSP 1 Score: 112 bits (279), Expect = 8.160e-24
Identity = 99/294 (33.67%), Postives = 131/294 (44.56%), Query Frame = 1
Query:  388 TSAFDLPKLVPIEDEDLVFKNHHFAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLF 1269
            TS   LP L P+ +E      H F+  ANW++PGKVL+G+YP   P+   T    +    +V  I+ +GGVT    LQAE+PPQ + +  G            +GF  Y   A   V                             XXXXXXXXXX                                  LAF H+PI DL      E +  L+ E+E  V++G+V ++HCW GRGR G + +CLL +LY  L AEQ+L RV R Y TRG +  G     SPET +Q   V+ F
Sbjct:   10 TSVATLPALQPLTEEAEFDAAHTFSSFANWIIPGKVLVGRYPYVEPSRCRTHDQGEA---QVQQILQQGGVTTFISLQAEVPPQAEMTMGG-----------VNGFVPYASVATLLVSAMSGPPSMKEVNGLRNEYLDTFLPPRRKXXXXXXXXXXERMPRRK---------------------------LAFLHYPITDLD-IPTPEQVRELIGEIERRVQAGEVLYVHCWGGRGRAGTVGACLLAQLYG-LDAEQALARVQRAYNTRGELGYG-----SPETLQQVNFVKAF 255          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: A0A250WX85_9CHLO (Protein-tyrosine-phosphatase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WX85_9CHLO)

HSP 1 Score: 97.1 bits (240), Expect = 1.930e-18
Identity = 88/296 (29.73%), Postives = 123/296 (41.55%), Query Frame = 1
Query:  403 LPKLVPIEDEDLVFKNHHFAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQVLNS 1290
            +P+L P++D    +  H F   ANWLVPG V+LG+YP   P+   +    +    ++L++    G+T   CLQ ELPPQD     G    KD       GF  Y+  A                                                                 A +V   +    L F H PI DL    + E L  L+ +LE  + SG+  +IHCW GRGR G + +C+L R+Y  +S ++SL RV R + TRG V        SPET EQ E VR + + V +S
Sbjct:   46 VPRLQPLDDSYEEW--HTFKPYANWLVPGHVMLGRYPFVEPSRCLSRKQGEEQLSQILNV----GITTFVCLQDELPPQDMLKISG----KD-------GFLPYKTTAELIQAALNGPAPETEDLHALRTPALNKFLPPKKKQ------------------------------ASLVTNRKE---LKFLHSPIVDLG-LPSVEALQKLLFDLETRLESGEKLYIHCWGGRGRAGTVGACMLQRMYG-VSVDESLERVQRAFSTRGDVQYK-----SPETDEQFEFVRNYARLVASS 284          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: I0YRS1_COCSC (Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YRS1_COCSC)

HSP 1 Score: 92.8 bits (229), Expect = 1.690e-17
Identity = 78/272 (28.68%), Postives = 109/272 (40.07%), Query Frame = 1
Query:  457 FAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFF 1272
            F++ ANW++P KVLLG+YP   P+   T    +    ++L    + GVT    LQAE PPQ   +  G            +GF  Y   A   V                                                          + A E+         LAF H+PI DL     T+ +  L+ E+   V +G+V ++HCW GRGR G +A+CLL  LY  + AEQ+L RV R Y TRG +        SPET +Q   V+ + 
Sbjct:    1 FSQFANWIIPSKVLLGRYPYVEPSRCRTHDEGEAQVSQIL----QAGVTTFISLQAETPPQTSMTMGG-----------VNGFVPYASVAALLVSAMSGPPDMKEVNGLRNPYLDTFLPPRRKQQR--------------------------QEAQELEEQRPPRRQLAFLHYPITDLD-IPTTDQVRELIGEIARRVEAGEVLYVHCWGGRGRAGTVAACLLASLYG-VDAEQALARVQRAYDTRGELGYA-----SPETLQQVNFVKSYI 224          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: A0A150GA54_GONPE (Protein-tyrosine-phosphatase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GA54_GONPE)

HSP 1 Score: 90.1 bits (222), Expect = 2.280e-16
Identity = 83/284 (29.23%), Postives = 114/284 (40.14%), Query Frame = 1
Query:  457 FAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEG-------LAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQVLN 1287
            F + ANWL+PG VLLG+YP   P+        +   +  L  +L  GVT L  LQAELPPQ+  +  G             GF  Y+  A A +                                                       G      +  L  R  +G       L F H PIPDL    +TE+ A L+ +L+  +  G+  ++HCW GRGR G + +CLL  +Y +LSA++ L RV R + TR         R SPET EQ   VR +   + N
Sbjct:   30 FTDFANWLIPGSVLLGRYPYVEPSRCLR----REQGEEQLKKILETGVTTLVSLQAELPPQEKMTLAGS-----------HGFLPYK--ATADLIRSSLNGPPPMEIV----------------------------------------EGLRNPQLDKFLPKRKRQGAPYNPVTLQFVHSPIPDLHVPGSTELRA-LLQDLQQRLAKGEKLYVHCWGGRGRAGTVGACLLAEMY-DLSADECLERVQRAFDTRHD-----GGRRSPETEEQVAFVRGYVSALKN 249          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: A0A812I4Z1_9DINO (Protein-tyrosine-phosphatase n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812I4Z1_9DINO)

HSP 1 Score: 94.0 bits (232), Expect = 2.700e-16
Identity = 76/274 (27.74%), Postives = 111/274 (40.51%), Query Frame = 1
Query:  445 KNHHFAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRL 1266
            K   F+E ANWL+PG +++G+YP   P       T Q      L  +L+ G+T   CLQ E+PPQ   +    PAD      F   F  Y   A + +                                                                         L F H PI DLS   + E L+ LV EL   + + +V ++HCW GRGR+G++A+CLLG ++ E++A + L  V   Y +RG+ A   +   SP+T EQ + V+L
Sbjct:   43 KPQRFSEHANWLLPGHLMIGRYPYLNPVYC----TSQREAVEQLHGLLKVGITTFVCLQTEIPPQVGPASEEWPADGVPVTGFPGRFLPYAAKAQSLMPD-----------------------------------------------------------------------LQFMHCPIQDLSTPRSRE-LSELVGELMQRMEANEVIYLHCWGGRGRSGVVAACLLGSMFGEMTAAECLEMVQCGYSSRGSKADVGALAKSPQTDEQRQFVKL 240          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: E1ZPG6_CHLVA (Protein-tyrosine-phosphatase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZPG6_CHLVA)

HSP 1 Score: 91.7 bits (226), Expect = 2.730e-16
Identity = 88/298 (29.53%), Postives = 120/298 (40.27%), Query Frame = 1
Query:  394 AFDLPKLVPIEDEDLVFKNHH----FAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFK 1275
            A  LP+L P+++      N+     FA+ ANWLVPG+V+LG+YP   P+   +    +   +  L  +L+ GVT   CLQAE+P Q      G             GF  YR  A                                                          R   +  A + L         F HFPI DLS  E  + L  L+ EL   +  G+  ++HCW GRGR GL+ + LL +LY  LSA+++L RV R + TR         R SPET EQ   VR F +
Sbjct:   87 AVPLPELAPLDE------NYESACAFADFANWLVPGRVMLGRYPFVEPSRCRS----RDVGEEQLRRLLKAGVTTFVCLQAEIPEQGAMRICG-----------VDGFVPYRAPATLLASALSPPPSMEEVAALRTPELDRYLPPRRH-------------------------RAAWQSRARIQLD--------FCHFPIVDLSIPE-ADGLRLLLAELSQRLERGERLYVHCWGGRGRAGLVGATLLAQLYG-LSADEALERVQRSFDTRQD-----GGRRSPETDEQHAFVRAFVE 323          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: A0A812V6G0_SYMPI (Protein-tyrosine-phosphatase n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812V6G0_SYMPI)

HSP 1 Score: 89.7 bits (221), Expect = 2.840e-16
Identity = 77/279 (27.60%), Postives = 116/279 (41.58%), Query Frame = 1
Query:  457 FAERANWLVPGKVLLGKYPGQIPADLATGPTVQIARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFRAYRGDAVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRXXXGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGT-VAIGKSSRVSPETPEQEEQVRLFFKQVLNS 1290
            F+E ANWL+PG +++G+YP   P    +    Q   D  L  +L  GVT   CLQ+E+PPQ       P +     G F   F  Y   A                                                                          ++ L F H PI DL+  ++ E L+ LV +L   + +G+V ++HCW GRGR+G++A+CLLGR +  L   + L  V   Y +RG+ + IG  ++ SP+T EQ + V+L+  Q  +S
Sbjct:   44 FSEHANWLLPGHLMIGRYPYLNPVYCMS----QQDADAQLRSLLDAGVTTFVCLQSEIPPQIGAGAVWPKSGVPVRG-FAGSFMPYAAKAQRLAP---------------------------------------------------------------------DKPLQFLHCPIQDLNTPQSQE-LSELVADLSQRMEAGEVIYLHCWGGRGRSGVVAACLLGRFF-NLPPAECLRVVQDGYSSRGSELDIGALAK-SPQTDEQRQFVKLWLTQTQSS 245          
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Match: A0A7S1WRL8_ALECA (Protein-tyrosine-phosphatase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WRL8_ALECA)

HSP 1 Score: 84.3 bits (207), Expect = 1.680e-15
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  958 LAFHHFPIPDLSPAENTEILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQSLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVR 1263
            + F H PI DL      + L+ L++ +E L+ SG+V ++HCW GRGRTG++A+CLLG+L+P+ SA+  L+ V   Y +RG         +SP+T EQ   VR
Sbjct:   27 VKFVHEPITDLGVPSPRQ-LSTLLNHVEGLLHSGEVVYLHCWGGRGRTGVVAACLLGKLFPDRSADDCLDLVQAAYSSRGDDRDVGQLALSPQTREQRNFVR 127          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH3_9PHAE4.140e-21293.22Protein-tyrosine-phosphatase n=2 Tax=Ectocarpus Ta... [more]
R1BR51_EMIHU3.920e-2430.07Protein-tyrosine-phosphatase n=1 Tax=Emiliania hux... [more]
A0A8J9WNE9_9CHLO8.160e-2433.67Probable cyclin-dependent kinase inhibitor 3 at C-... [more]
A0A250WX85_9CHLO1.930e-1829.73Protein-tyrosine-phosphatase n=1 Tax=Chlamydomonas... [more]
I0YRS1_COCSC1.690e-1728.68Protein-tyrosine-phosphatase (Fragment) n=1 Tax=Co... [more]
A0A150GA54_GONPE2.280e-1629.23Protein-tyrosine-phosphatase n=1 Tax=Gonium pector... [more]
A0A812I4Z1_9DINO2.700e-1627.74Protein-tyrosine-phosphatase n=1 Tax=Symbiodinium ... [more]
E1ZPG6_CHLVA2.730e-1629.53Protein-tyrosine-phosphatase n=1 Tax=Chlorella var... [more]
A0A812V6G0_SYMPI2.840e-1627.60Protein-tyrosine-phosphatase n=1 Tax=Symbiodinium ... [more]
A0A7S1WRL8_ALECA1.680e-1542.16Protein-tyrosine-phosphatase n=1 Tax=Alexandrium c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:596516..601632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score540.8
Seed ortholog evalue5.3e-151
Seed eggNOG ortholog2880.D8LRV7
Model size2505
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Cyclin-dependent kinase inhibitor 3 (CDKN3)
EggNOG OGs2BVII@1,2S80H@2759
Ec32 ortholog descriptionProtein-tyrosine phosphatase-like
Ec32 orthologEc-08_002600.1
Cds size1188
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17697.1prot_Ecto-sp6_S_contig85.17697.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 596624..600423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350483.9429452-UTR-Ecto-sp6_S_contig85:596515..5966231682350483.9429452-UTR-Ecto-sp6_S_contig85:596515..596623Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 596516..596623 +
1682350484.0210192-UTR-Ecto-sp6_S_contig85:600423..6016321682350484.0210192-UTR-Ecto-sp6_S_contig85:600423..601632Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 600424..601632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350483.9546435-CDS-Ecto-sp6_S_contig85:596623..5968841682350483.9546435-CDS-Ecto-sp6_S_contig85:596623..596884Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 596624..596884 +
1682350483.971112-CDS-Ecto-sp6_S_contig85:597423..5975301682350483.971112-CDS-Ecto-sp6_S_contig85:597423..597530Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 597424..597530 +
1682350483.9816332-CDS-Ecto-sp6_S_contig85:598538..5986831682350483.9816332-CDS-Ecto-sp6_S_contig85:598538..598683Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 598539..598683 +
1682350483.9899359-CDS-Ecto-sp6_S_contig85:599245..5996861682350483.9899359-CDS-Ecto-sp6_S_contig85:599245..599686Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 599246..599686 +
1682350484.0059497-CDS-Ecto-sp6_S_contig85:600189..6004231682350484.0059497-CDS-Ecto-sp6_S_contig85:600189..600423Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 600190..600423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17697.1

>prot_Ecto-sp6_S_contig85.17697.1 ID=prot_Ecto-sp6_S_contig85.17697.1|Name=mRNA_Ecto-sp6_S_contig85.17697.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=396bp
MSTPASHGIAGWVVPNANMNVKFNFVDGRSPPSCSSSVDGVKRLGGRGCN
SRKSWSTMSTSTREVIPLSPLSQLRLEEEVEDGLSTQARRPAQTSAFDLP
KLVPIEDEDLVFKNHHFAERANWLVPGKVLLGKYPGQIPADLATGPTVQI
ARDRVLDIVLRGGVTDLYCLQAELPPQDDESQWGPPADKDDSGMFFSGFR
AYRGDAVAAVAAAAAAAPASGSAATLTMTSQVEGDSDRKGNVAVNVAVND
NSEEEGGGVREEQGRGTGEGAAEVVLGARGEEGLAFHHFPIPDLSPAENT
EILAGLVDELEALVRSGKVPFIHCWAGRGRTGLIASCLLGRLYPELSAEQ
SLNRVDRYYRTRGTVAIGKSSRVSPETPEQEEQVRLFFKQVLNSD*
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mRNA from alignment at Ecto-sp6_S_contig85:596516..601632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17697.1 ID=mRNA_Ecto-sp6_S_contig85.17697.1|Name=mRNA_Ecto-sp6_S_contig85.17697.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5117bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:596516..601632+ (Ectocarpus species6 EcLAC_371)
GTTGCTCAGAGGATGTAGGGGAGATGCTACGCCTCCTTGTGCTGCAACCA CAAACACCCAGTGCTTCTGTTGATCCTGCCGCCAAGTCCTTTTAGTTACC GCTGTGGGATGTCTACCCCAGCGAGCCATGGTATCGCGGGCTGGGTTGTT CCAAACGCAAACATGAACGTAAAATTCAATTTCGTTGACGGACGTTCTCC GCCATCGTGCTCGTCATCCGTTGATGGCGTGAAGCGCCTTGGAGGTAGAG GATGCAACTCCAGGAAAAGCTGGAGCACGATGAGTACGTCCACGCGTGAA GTAATTCCACTGAGCCCTCTGTCTCAACTACGACTGGAGGAGGAAGTCGA GGATGGGCTCTCCACCCAGGTACGTACTCTCTGCAAGTTTGCGTACGTGT ACGTCTGTCTGACGATGAATCGAGAAGCACCGCAGCTACTCAGAGATGCA GTACTGCTGTAGATACAACCGGCTTTTAGATCCATCTCTTGTTCTCGCAA AACTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTAACCGCACTGACTGACTG TTGTGTGCAACTTCAATGAAGAGCGCGTAATCAACCAAAATAGCACCAAC GGTCCTATCTATGCATACGGTACGCCTGTTGACGGGGTGCTTTTACGTTC TTACGACTTGTATTGTGGACACAATGGTTGAACGGTGAACCTTCTCGGCT TTTTCTCGGCTTTCGTTTCTTCAACCTCCGGGGGAACTTAGTTTCTCGTC ACAGCGTGCAACATACGTTCCCGCCTCCTCTGCTGCAGCACAAAAACTGC GGTACCGTTCGCGTCTCTTGCCCCCTGTCCAACCGCGATGTTTTGTTGCC ACGATCAGGCGCGCCGGCCGGCGCAGACAAGTGCGTTTGACTTACCGAAG CTTGTCCCGATCGAGGACGAGGATCTCGTGTTCAAGAATCACCACTTTGC GGAGCGGGCGAACTGGTGAGCGAGGGGAATCATCAGGGGGGGAGGGCAAG GAACAACAACGCGTATCTTCACATTGTGTGTATGCTACCATCTGGGAGTA GTTTCCCACTTTGTGAGTGGATTCCAGGGAAAGAATGCACTGCTGTGTTG GGAGTGTGTCCTTGCAGGCAAGTTTCACCGACAACGGCAAGAAGAAATTA TATTGTCTGTCAATCAAAGACTTTTAAATATTAGTGTCAGCAGTACCTCC CTTTAGTACGACTGAAGAGTCAGCAGTACCTCCCCTACAGGACTACTGCT GTACTTTTTCAACGCCAAGGCTCCGGGCAGCAGTCATTCGTCATTCCTTG TGCCATGACACGCGTACTCGCAATTAACTACAGAAGGTCATCGCTATGTA AGGAACCAACCCCGGCTTTATCAAATGTTTGGGGAGAGCTCGTGTTGAAG TTGCGCGACAGCATTACTCCTGCGGCACGGGATGAACAGAAACATAACTT GGCTTGGCTGTTGGTATTTTTAGAACTTGGAAGTGGTGTTCATGCTGACC TCGCTTTATATGTTCACGCAGCTGGCCAATCGCACTCAAAATCACGGGAG GGTTGCATGTGAAAAACGGACATTCGCGTTTGTTGTCCTCGAGAGTGAGG CGGGTCGACCCCTTGTGCCCTGTCGTGACGCCATGCCAAGAGGGAGAGCG GCTACATTCAGCCGTTCTTGTTTGTAATGGTGTGGCATCGCTGTAGACGG CTGATGCAGCAGTTCCCGCGAAGTCGTTCTTGCAAGCGCAGCATTTTTGT CCCACCCTGTCTCATCGTGGCTTCCTCTCTGTTGCATCGCCCGACCAGAC TCCAAGTGCAACAAACACGTCACAGTACAAACCCTTGCGTCGACAGGAGG TCATGCTCTAACAACAGCGCAACCACCCTATTATCACTAACATTGTTCAT GTCTTTCCTTCGGCGCCTCCGACATCTGCCTGCCCGCACACATCTATCTG TCGCCGGCCCGCTCTTTCTTCAGGCTTGTGCCCGGCAAGGTGCTGCTGGG GAAGTACCCGGGACAGATACCGGCCGACCTGGCGACGGGGCCCACCGTAC AGATCGCTCGCGACCGTGTGCTGGACATCGTCTTAAGGGGCGGGGTAACG GACCTCTACTGCCTGCAGGTCGGCGCCTGCTAAGGTTGATGGGACACTTG AGCACCTAGTCGGCGCGACGGCCCGAAGTATAGAACATCACATTGCCGGT CTTTCTCGGGGGCTAGTGACCGTTGCTTTTGTGTTTTTTTCGTGCACACT TTTTATACAAGTGAATTCGTTGGCGATTGGGTATCGCAATGGTTCGGGGC CGAAATTGAACGAAGCATCGGCAGGAAGCTGTTGGTAACCAAGATTTATT TCGACATTACCGTGTTTGTGGGCAGTGCCACTTTCCCCCTCATAAAAAAC TTGATTGGGTAGATTAGAGAAAAGTTCCGAGAGGGTAATGACCGCCTTGT ACCGTCAACTAATGCCTTCTCTCTCCGCTGTGGCAGTCTAAAGTTATCCC GTAAGAAAACGACCACGCCCTCGTGCACGCAACAGCTCTGTAATCGACCC ATCATACCCCCCCGTCCCCGTCCCTGACTCATGACACGGGACCCCTCCTG TCGTTGTTCCCTCTTGAGTTTTCGACTGCAGTAGCTAAAATCCGCGTCCT CCCGAAAAATTCTTTTTGTGGATCGCGCAGGCGGAGCTTCCTCCACAGGA CGACGAGAGCCAATGGGGCCCTCCGGCTGATAAGGACGACAGCGGCATGT TCTTTTCGGGGTTCCGTGCTTACCGGGGCGATGCCGTGGCCGCCGTAGCC GCCGCCGCCGCCGCCGCTCCTGCTTCTGGTTCTGCAGCAACATTGACGAT GACAAGTCAGGTGGAGGGAGACTCAGACCGTAAGGGGAACGTCGCTGTTA ACGTCGCTGTTAACGACAACAGCGAGGAGGAAGGGGGGGGGGTGCGAGAA GAACAAGGGCGAGGCACAGGGGAGGGGGCGGCGGAGGTGGTGCTGGGAGC GAGGGGGGAGGAAGGGCTTGCGTTTCACCACTTTCCGATACCGGACCTGT CGCCGGCGGAGAACACGGAGATTCTGGCGGGGCTGGTGGACGAGCTGGAG GCCCTGGTTAGGTCAGGAAAGGTAATGCATATGCATATGTGCCACAATGG TGTTGGACACAGCAGTGGGTATGCCGTTGGGCGAATCATTGACTTCTATC GTAGGACTGCCATGTTTCGCGTTGCATACGGAAGAAAGGCCTGGTGCGGT TTTCCGTGGGAAGAAGTGGGTCCGTGGGTGGCCTATGGAGAGGTGGGCAT CGCCATGAAACGAGGATGGATGTCATGAACAATTTTGCAATATCCTTACA CGGGTGGGTGTGTGCGTGAGAGTGATGGAGGAGGCTGATGGAAAAATGGG CTGGAGCTTCATGCTAGACTTGTTCCTCGTTTGAGAAACCCTCATGTTTC GCAGATAATTCAACTGTTGTTGCACAAGGCGCGTTTTCAAGACGCCCCCA CTGCTCCGTGAGACACACTCGAGTTTGGACGATGTTGTGCGGTCCAGCTA TATGAGGTTTTTCGATTTCATCTATGAAAAAAACATTCTCAAAGTGATGA TGAAACACTGTTTTGTCCGTGCAGGTGCCCTTCATCCACTGCTGGGCGGG TAGGGGCAGAACAGGTCTCATCGCGTCCTGCCTTTTGGGACGGCTGTACC CGGAATTGAGCGCGGAGCAGTCGCTTAACCGTGTGGACCGTTACTACCGC ACCAGGGGCACCGTGGCGATCGGAAAATCCAGCCGCGTCTCCCCCGAGAC ACCCGAGCAGGAGGAACAAGTTCGCCTGTTTTTCAAGCAGGTGTTGAACA GTGATTGAACACACATTGATTGATCGTTGTGACATTTTGTTCGAAAGAGA GACGAATCATTTTTTTCTTGTAGCCGCGATGTCTTTCGCGCAACAGCAGG GTGTGTGGGGATCGTATTTACGGAGTACGATATGGCAAGGTGTGTTGACT GCTGTGTTTGTCCGCCCTCGCCCCCCCCTTGGCATTTTTTTCTGTTTCGC AAAAGTACTGTGTTAGGAAGCATACAGCAGTATGCGGCGTTTTTTTCGCG GCGTGCAGGAGGTAGAAGCGTAAATGGTACAACAGGAGAACCGGATTATT AAGAAGGAACGGAAGAAATTTATAAGGAATTTGTTTGTAGTTCGAGCAGA TCTCCCAACGTGGCCATGTTTGTTTACGTCTTTATGGTAAGAAACACGGG CTGGATGGCACTTGTGCCAGTTTTGTTGGATGTGTCTCAGCGTGGATCTC GGGTGCACCGCACCAGCAACTCCTGCTTAGTTCGATCGGAGAAGCTCGCC TCGCGGTGTGATACAAGTAGTCTATCCTACAAGCCTCTTGTTCTATTTTA TGACAAAGCACGACGGGTGGGCTGGGGTGAAGACGCCCCTCCTTAGACCC CCCTCCTTGCGTGTGCAGGAGATTGCAGGTCTTGTTTTCAGTGAGGGACA ATCAAGAGACAAACGATGATAATTCGTCCGTCGAACGACGCCTTTGTTTT CAAAACTTTCATCGGGGTCGGATGCGTTTTTGGCCGACCATTTTTTTGGC GTGCACGGGTCTCGAACGAACACGACCGGCGGCCTTGATTTCTCTCGGAT TGGTTGGTTTTTCTTTTTTGCTCCGCTGGTCCGATGGAGAGATAGGTCGG TTCGTTTGGGTCTCAAGCAGTTCGGTGCAATAGTGTTGGATGAAGGGCAA AACAAACAAACCGGGGTTACTGCTGACCTATTTGAAGTACCGCCGTCTTT GGGCAAAGCATCAAGCCCGCCTATTGAAGCGACTATCTGACATGCATTAT TGTAAGGGCACCACCTGGTTGCACGGGGGTCTCAGGTGTTGTTTTCTCAA CGTCAGCCGCGTCAGCAGACGAAAATGTACGTTGAGGTGAAGAGAACGAA CGCCCAACAAGCTTGTAGGCTGTAGGTGATGAAACTGCTGGGGATGGCAT CGTGTGATGGGGATATCGTGTAGGCGACCCCGACGAAACATCGCCAACTT ACCTGTTGGTGAACTCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:596516..601632+

>mRNA_Ecto-sp6_S_contig85.17697.1 ID=mRNA_Ecto-sp6_S_contig85.17697.1|Name=mRNA_Ecto-sp6_S_contig85.17697.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1188bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:596516..601632+ (Ectocarpus species6 EcLAC_371)
ATGTCTACCCCAGCGAGCCATGGTATCGCGGGCTGGGTTGTTCCAAACGC
AAACATGAACGTAAAATTCAATTTCGTTGACGGACGTTCTCCGCCATCGT
GCTCGTCATCCGTTGATGGCGTGAAGCGCCTTGGAGGTAGAGGATGCAAC
TCCAGGAAAAGCTGGAGCACGATGAGTACGTCCACGCGTGAAGTAATTCC
ACTGAGCCCTCTGTCTCAACTACGACTGGAGGAGGAAGTCGAGGATGGGC
TCTCCACCCAGGCGCGCCGGCCGGCGCAGACAAGTGCGTTTGACTTACCG
AAGCTTGTCCCGATCGAGGACGAGGATCTCGTGTTCAAGAATCACCACTT
TGCGGAGCGGGCGAACTGGCTTGTGCCCGGCAAGGTGCTGCTGGGGAAGT
ACCCGGGACAGATACCGGCCGACCTGGCGACGGGGCCCACCGTACAGATC
GCTCGCGACCGTGTGCTGGACATCGTCTTAAGGGGCGGGGTAACGGACCT
CTACTGCCTGCAGGCGGAGCTTCCTCCACAGGACGACGAGAGCCAATGGG
GCCCTCCGGCTGATAAGGACGACAGCGGCATGTTCTTTTCGGGGTTCCGT
GCTTACCGGGGCGATGCCGTGGCCGCCGTAGCCGCCGCCGCCGCCGCCGC
TCCTGCTTCTGGTTCTGCAGCAACATTGACGATGACAAGTCAGGTGGAGG
GAGACTCAGACCGTAAGGGGAACGTCGCTGTTAACGTCGCTGTTAACGAC
AACAGCGAGGAGGAAGGGGGGGGGGTGCGAGAAGAACAAGGGCGAGGCAC
AGGGGAGGGGGCGGCGGAGGTGGTGCTGGGAGCGAGGGGGGAGGAAGGGC
TTGCGTTTCACCACTTTCCGATACCGGACCTGTCGCCGGCGGAGAACACG
GAGATTCTGGCGGGGCTGGTGGACGAGCTGGAGGCCCTGGTTAGGTCAGG
AAAGGTGCCCTTCATCCACTGCTGGGCGGGTAGGGGCAGAACAGGTCTCA
TCGCGTCCTGCCTTTTGGGACGGCTGTACCCGGAATTGAGCGCGGAGCAG
TCGCTTAACCGTGTGGACCGTTACTACCGCACCAGGGGCACCGTGGCGAT
CGGAAAATCCAGCCGCGTCTCCCCCGAGACACCCGAGCAGGAGGAACAAG
TTCGCCTGTTTTTCAAGCAGGTGTTGAACAGTGATTGA
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