mRNA_Ecto-sp6_S_contig85.17696.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17696.1
Unique NamemRNA_Ecto-sp6_S_contig85.17696.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: D8LRV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV3_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 6.990e-34
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIEPADDSSAEAGDGGGDAEPPAQPEAGTA 216
            QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQ EIEPADDSSAEAGDGGGDAEPPAQPEAGTA
Sbjct:    5 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQAEIEPADDSSAEAGDGGGDAEPPAQPEAGTA 70
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: A0A6H5JUG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG8_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.320e-17
Identity = 47/66 (71.21%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIEPADDSSAEAGDGGGDAEPPAQPEAGTA 216
            QNRFSQMSDTIIGRV                LM+Q EIEPADDSSAEAGDG GDAEPPAQPEAGTA
Sbjct:   41 QNRFSQMSDTIIGRVXXXXXXXXXXXXXXXXLMLQAEIEPADDSSAEAGDGSGDAEPPAQPEAGTA 106
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: F0WJR0_9STRA (Predicted protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJR0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.720e-8
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIE 135
            QNRFSQMSD IIGR+D+M TRID+LEKSI DLM Q   E
Sbjct:   35 QNRFSQMSDAIIGRIDDMGTRIDELEKSIGDLMDQTNDE 73
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: A0A835YY59_9STRA (Heat shock factor-binding protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY59_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.970e-8
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIEPA 141
            Q RF QMSDTIIGRVDEM  R+DDLEKSI DLM    +E A
Sbjct:   34 QTRFQQMSDTIIGRVDEMGARLDDLEKSIADLMEATGVEGA 74
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: B8C8F7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8F7_THAPS)

HSP 1 Score: 55.1 bits (131), Expect = 4.530e-8
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    7 DNLQQNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIE--PADDSSAEAGDG 171
            DN+Q  RFS++SDTI+GR+D+M ++IDDLEK+I +LM Q  +E  P    SAE+G+G
Sbjct:   37 DNMQ-TRFSRLSDTILGRIDDMGSKIDDLEKNISELMEQAGVESPPTTTLSAESGEG 92
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: A0A1V9Z1A4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1A4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.010e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIE 135
            Q+RF+QMS+ IIGR+DEM +RIDDLEKSI +LM Q   E
Sbjct:    2 QSRFAQMSEAIIGRIDEMGSRIDDLEKSIGELMEQSSTE 40
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: A0A7S2ERV2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERV2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.130e-7
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIEPADDSSAEAGDGGG 177
            Q RFS M D+IIGR+DEM  RI+DLEKS+ DLM +  ++P     A +G GGG
Sbjct:   55 QKRFSHMGDSIIGRIDEMGDRIEDLEKSVSDLMERAGVDPP--PIAPSGGGGG 105
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: A0A067CS54_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CS54_SAPPC)

HSP 1 Score: 51.2 bits (121), Expect = 7.600e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIE 135
            Q+RF+QMS+ IIGR+DEM +RIDDLEKSI +LM Q   E
Sbjct:   32 QSRFAQMSEAIIGRIDEMGSRIDDLEKSIGELMEQSSTE 70
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: A0A7R8WI46_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WI46_9CRUS)

HSP 1 Score: 51.2 bits (121), Expect = 1.070e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIEPAD 144
            Q+RF  MS  I+GR+D+M  RIDDLEK+I DLM Q  +E AD
Sbjct:   50 QDRFQNMSSQILGRIDDMGARIDDLEKNIADLMTQAGVEEAD 91
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BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Match: A0A0P1B719_PLAHL (Heat shock factor binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B719_PLAHL)

HSP 1 Score: 50.4 bits (119), Expect = 1.110e-6
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:   19 QNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQ 123
            Q+RF+QMSD IIGR+DEM +RID+LEKSI DL+ Q
Sbjct:    2 QSRFAQMSDAIIGRIDEMGSRIDELEKSIGDLVDQ 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRV3_ECTSI6.990e-3498.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG8_9PHAE1.320e-1771.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0WJR0_9STRA1.720e-874.36Predicted protein putative n=1 Tax=Albugo laibachi... [more]
A0A835YY59_9STRA3.970e-870.73Heat shock factor-binding protein 1 n=1 Tax=Tribon... [more]
B8C8F7_THAPS4.530e-854.39Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1V9Z1A4_9STRA4.010e-766.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2ERV2_9STRA5.130e-754.72Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A067CS54_SAPPC7.600e-766.67Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7R8WI46_9CRUS1.070e-659.52Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A0P1B719_PLAHL1.110e-671.43Heat shock factor binding protein n=1 Tax=Plasmopa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:583508..584210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score120.9
Seed ortholog evalue2.4e-25
Seed eggNOG ortholog2880.D8LRV3
Preferred nameHSBP1
Model size219
KEGG koko:K19765
KEGG Pathwayko04212,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0001704,GO:0001706,GO:0003006,GO:0003008,GO:0003012,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0005856,GO:0006355,GO:0006357,GO:0006936,GO:0006950,GO:0007275,GO:0007369,GO:0007444,GO:0007492,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010154,GO:0010286,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0019219,GO:0019222,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034605,GO:0035220,GO:0035295,GO:0035987,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043621,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048316,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048598,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0060429,GO:0061458,GO:0065007,GO:0070013,GO:0070370,GO:0080090,GO:0080134,GO:0080135,GO:0140110,GO:1900034,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.transcription corepressor activity
EggNOG OGsKOG4117@1,KOG4117@2759
Ec32 ortholog descriptionHeat shock factor binding 1
Ec32 orthologEc-08_002570.1
Cds size219
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350483.8956199-CDS-Ecto-sp6_S_contig85:583507..5836031682350483.8956199-CDS-Ecto-sp6_S_contig85:583507..583603Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 583508..583603 -
1682350483.9130425-CDS-Ecto-sp6_S_contig85:584087..5842101682350483.9130425-CDS-Ecto-sp6_S_contig85:584087..584210Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 584088..584210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17696.1prot_Ecto-sp6_S_contig85.17696.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 583508..584210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17696.1

>prot_Ecto-sp6_S_contig85.17696.1 ID=prot_Ecto-sp6_S_contig85.17696.1|Name=mRNA_Ecto-sp6_S_contig85.17696.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=73bp
MNDNLQQNRFSQMSDTIIGRVDEMSTRIDDLEKSIQDLMVQVEIEPADDS
SAEAGDGGGDAEPPAQPEAGTA*
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mRNA from alignment at Ecto-sp6_S_contig85:583508..584210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17696.1 ID=mRNA_Ecto-sp6_S_contig85.17696.1|Name=mRNA_Ecto-sp6_S_contig85.17696.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:583508..584210- (Ectocarpus species6 EcLAC_371)
ATGAACGATAACTTGCAGCAAAATCGGTTCAGTCAAATGTCGGACACCAT
CATCGGGAGGGTAGACGAGATGAGCACCCGCATAGACGACCTGGAGAAGT
CCATTCAGGACCTCATGGTGCAGGTAATTGCGTCCGTTGATTTCAATGAC
GATGATCTGCACACCTGGCACTTTGCGAGGTCGGAAAAGAAACGTCATAC
CAGTGTAGTTCGGTTTGGTCGAGCCTCAATTTCTGGTTTTATCTTCACTG
TCGAGCACCGATCGTCACAATACATGCCAGTCGCGGGTAGCGCAGGATCT
ACGCTTGAGCTGTGTTTCTTGAACTCGACGAGTATGTATGTTATTTTTGT
TCTTGAAAAATGGAGCCCCTATTTCTTATCGGGGTGTTTGTTAGTTTCGG
GCCCGTTGTGTATATTTGCTTGTTTTTCTGCCCACAGGAGAGTCGAGGGT
CGATTTCCAGCTGTACACGTCTGTGTCTTGCGTCAGTTGTATAGGGACGG
GAATGGAAATTGAAGCTTGCGTGTGACCACCGCTCTCGACGGAACGAACG
CGCGATAAAAAGAAAAGCACCGTGCCATACCTGCCCCTTTGCGTTTGTGG
CGCACAGGTCGAGATCGAACCTGCAGATGACTCTTCTGCCGAGGCGGGGG
ACGGGGGTGGGGATGCAGAACCACCAGCACAACCTGAAGCTGGAACCGCG
TAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:583508..584210-

>mRNA_Ecto-sp6_S_contig85.17696.1 ID=mRNA_Ecto-sp6_S_contig85.17696.1|Name=mRNA_Ecto-sp6_S_contig85.17696.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:583508..584210- (Ectocarpus species6 EcLAC_371)
ATGAACGATAACTTGCAGCAAAATCGGTTCAGTCAAATGTCGGACACCAT
CATCGGGAGGGTAGACGAGATGAGCACCCGCATAGACGACCTGGAGAAGT
CCATTCAGGACCTCATGGTGCAGGTCGAGATCGAACCTGCAGATGACTCT
TCTGCCGAGGCGGGGGACGGGGGTGGGGATGCAGAACCACCAGCACAACC
TGAAGCTGGAACCGCGTAG
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