mRNA_Ecto-sp6_S_contig85.17687.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17687.1
Unique NamemRNA_Ecto-sp6_S_contig85.17687.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: D8LRU5_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU5_ECTSI)

HSP 1 Score: 641 bits (1654), Expect = 2.740e-225
Identity = 375/434 (86.41%), Postives = 378/434 (87.10%), Query Frame = 1 
Query:   34 MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQATPPXXXTAPVQFAQXXXXXXXXXXXXXXXXXXXAFVSQXXXXXXXXXXXXXXXXXXXXXXXXXXRQPRALTSATSGSQ--RWATNGPQNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLVNGGGAGRGAAGGTSAASAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNR 1329
            MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQA PP   TAPVQFAQ      XXXXXXXXX    AFVS                                + S   G+   R ATNGPQNGPPARQQATQAGQRQPAPSARP PVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQL+NGGGAGRGAAGGTSA SAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNR
Sbjct:    1 MAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQAAPPPPPTAPVQFAQPPQPTGXXXXXXXXXLLSPAFVSLLM-----------------------------MRSCGQGNPDVRRATNGPQNGPPARQQATQAGQRQPAPSARPVPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLINGGGAGRGAAGGTSATSAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNR 405
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A7S2DIJ2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DIJ2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.590e-25
Identity = 156/432 (36.11%), Postives = 196/432 (45.37%), Query Frame = 1 
Query:   58 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGS---------QATPPXXXTAPVQFAQXXXXXXXXXXXXXXXXXXXAFVSQXXXXXXXXXXXXXXXXXXXXXXXXXXRQPRALTSATSGSQRWATNGPQNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLVNGGGAGRGAAGGTSAASAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKS-SFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARR-RGGRG 1320
            PL+GSRISLISKK+IRY G LY+INTS+A++ALQ+VRSFGTE R     +PP+  ++ F+ FRG DI DLH+HD++  +G          +  PP    AP                        A       XXXXXXXXXXXXXXXXXXXXXXX       SA+ GS                            +A  AP+        A   +      +  G++   + RR P   R               GAP+G         Q  N                A     GAM GTG +LL  + +G    + + A S   +++FDF S  + FDK+KE  K    L+   S+ TA         DS KKYN S SFFDE+SCD LDR   R    TR  E   N +TFG  GLQ  RR RG RG
Sbjct:    9 PLIGSRISLISKKDIRYVGFLYDINTSEATVALQDVRSFGTEHRPVPQFVPPADTIYPFIKFRGSDINDLHIHDSQPTDGEGPLQQLMGGKPQPPQQEPAPALLTGLGGFPTAISPPGVLSTASLA-PGPLLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSASFGSF---------------------------AATVAPITSQTLTHTAKAENGGAAQLEVGGRSGTDSIRRPPNKGR--------------GGAPQGSSGRNAPRMQSSN-----------PKVPGASGSRSGAMPGTGASLLTRKPKGLD-KEHRNALSAEMSEDFDFSSAAEDFDKKKEAEK----LAARGSSITAEG-------DSSKKYNPSASFFDELSCDALDRGGKRFDSQTRLDEQKKNSETFGAVGLQDNRRSRGARG 375
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A7S2EU73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EU73_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.620e-23
Identity = 165/457 (36.11%), Postives = 207/457 (45.30%), Query Frame = 1 
Query:   58 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVE----GHV--IPPSQVLHDFVCFRGQDIMDLHVHD-----------------------AEADEGSQATPPXXXTAPVQFAQXXXXXXXXXXXXXXXXXXXAFVSQXXXXXXXXXXXXXXXXXXXXXXXXXXRQPRALTSATSGSQRWATNGPQNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLVNGGGAGRGAAGGTSAASAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPT-AQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDS---VKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNR 1329
            PL+GSRISLISKKNIRYEG LY+IN +DA++AL+NVRS+GTEGR +    GHV  +PP + +H ++ FRG DI DLHVH+                       A +D     + P     P Q                      +    XXXXXXXXXXXXXXXXXXXXXXXXXX                        PP+ +   + G+ QP+  +    V +  QQ+ A   SSS            +NQ+R  +G               P G  R R+N                               P   VGTG +LLN +ARG    DG GA S PT   +FDF+S L +FDK    A    G S E   S  S GG      S      Y+K  FFD ISCD +D+  G   R+  AAE  +N+DTFG   L  +RR GGR + R
Sbjct:    5 PLLGSRISLISKKNIRYEGLLYSINEADATVALENVRSYGTEGREKLDPSGHVAFVPPQEGVHAYLLFRGCDIKDLHVHESAPSVPAPXXXXXXXDPAIVSTGAPSDVAPTTSSPGNINRPEQ-QSYSDNEQQQNQTKQVEQPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSPKTVEEDGESQPSKVS----VKKNTQQQPARSGSSS------------RNQKRGGSG---------------PGGRSRPRKN------------------------------EPAHQVGTGASLLNRKARG--VVDG-GAGSAPTPTDDFDFESNLAEFDK----ATVTNGNSNETPESDFSGGGDAEIEISGSFSNAYSKDDFFDSISCDAIDKRDGIDNRLRGAAERSLNLDTFGAVSLGTSRR-GGRRNRR 391
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A7S0XMA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0XMA5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.560e-22
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   58 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRV------EGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQA-TPPXXXTAPVQFA 345
            PL+G+RISLISKKNIRYEG LY+IN SDA++ALQ+V+SFGTEGR       + + +PP   +H ++ FRGQDI DLHVH+ +    + A T P    AP   A
Sbjct:    5 PLIGNRISLISKKNIRYEGVLYSINESDATVALQDVKSFGTEGRELLDTTGQTNFVPPQDTVHTYLLFRGQDIKDLHVHEKQGTPAAAADTTPAKEEAPXXXA 107
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: B7FYW7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYW7_PHATC)

HSP 1 Score: 104 bits (260), Expect = 1.950e-21
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:   58 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGH----VIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQATPPXXXTA 330
            PL+G  ISLISKKNIRYEG LY+IN  +A++ALQNVRSFGTEGR         + PS  +H F+ FRGQDI DLHVH+A A+  + A PP   T+
Sbjct:    5 PLIGKNISLISKKNIRYEGVLYSINEQNATVALQNVRSFGTEGREATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAEAVTPAPPPPEPTS 99
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A7S2JUH1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.980e-21
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:   58 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVE-----GHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQATPP 315
            PL+GSRISLISKK+IRYEGTLY+IN +DA++ALQNVRSFGTEGR +     G  IPP   +H ++ FRG DI DLHVH+  +D   +   P
Sbjct:    5 PLLGSRISLISKKDIRYEGTLYSINETDATVALQNVRSFGTEGREKRDDAAGTFIPPQATVHPYLLFRGMDIKDLHVHEKASDAAKKEDVP 95
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A7S3L9Q7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9Q7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.230e-21
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:   58 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQA 306
            PL+G +ISLISKKNIRY GTLY+IN  +A++ALQNV+SFGTEGR     + PS  +H F+ FRGQDI DLHVH+    EG  A
Sbjct:    5 PLIGKQISLISKKNIRYLGTLYSINEQNATVALQNVKSFGTEGRPAPQEVAPSNDMHPFLLFRGQDITDLHVHEEGTTEGGGA 87
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A7S1G7E6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7E6_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.980e-20
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:   25 AADMAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQV-LHDFVCFRGQDIMDLHVHDAEADEGSQATP 312
            AA MA+ G+GVP +GS+ISLIS   IRYEGTL+NIN  ++++ALQNVRSFGTEGR +G    P+Q  +++++ FRG DI DL V   EA+  + A P
Sbjct:   36 AAAMADAGAGVPYLGSKISLISNSEIRYEGTLFNINPQESTVALQNVRSFGTEGRRQGGPQIPAQADVYEYIIFRGADIKDLRVL-TEAERVASAAP 131
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A662XUA1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUA1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.340e-19
Identity = 147/425 (34.59%), Postives = 185/425 (43.53%), Query Frame = 1 
Query:   52 GVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQATPPXXXTA----PVQFAQXXXXXXXXXXXXXXXXXXXAFVSQXXXXXXXXXXXXXXXXXXXXXXXXXXRQPRALT-SATSGSQRWATNGPQNGPPARQQATQAGQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTGQRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLVNGGGAGRGAAGGTSAASAPARTPGAMVGTGEALLNIRAR---GGPATDGKGAASVPTAQEFDFQSELQKFDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKSSFFDEISCDVLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHAR 1302
            G+P +GSRISLISK +IRYEG L+NI+T  + +ALQ+VRSFGTEGR   HV P  QVL  +  F+  +I DLHV +A       A PP    A    P  +AQ                      S         XXXXXXXXXXXXXXXX   +P  LT  + S +Q   T  P+   P                    PVA  +QQ    P   S            Q+Q       +  PR+  + +P+        RR G  +S Q  N G                 RT   + G G  LL  + R   GG A  G G      + EF+F   L  FDK++E +K    L  E    T  S            Y KSSFFD ISCD LDR  G++ R+T A E  +N +TFG  GL + R
Sbjct:   24 GIPYIGSRISLISKTDIRYEGFLFNIDTRQSMVALQSVRSFGTEGRRAEHVPPSPQVLQ-YATFKASEIQDLHVCEA-------APPPPQPAASQPQPQSYAQP---------------------SYPPPMPSGPXXXXXXXXXXXXXXXXAPSKPTLLTPGSVSSAQMHQTPSPRQAQP--------------------PVAMYSQQ----PMQPS----------YDQHQXXXXXXXQSAPRASYNSNPN--------RRQGGSQSGQAANNG----------------MRT---IPGMGGHLLKRKERRVPGGNAEVG-GVGPAAASGEFNFAEGLNDFDKQEEFSK----LDEEVKPETKGS------------YQKSSFFDTISCDALDRLEGQRSRITGAEERKLNTETFGAVGLNNRR 341
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Match: A0A1Z5JPN3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPN3_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 2.540e-19
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:   58 PLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRV---EGHV-IPPSQVLHDFVCFRGQDIMDLHVHDAEADEG-SQATPP 315
            PL+G RISL+SKKNIRYEG LY+IN  +A++ALQNV++FGTEGR    EG + + P+  +H ++ FRGQDI DLHVH+  A+E  +Q T P
Sbjct:    4 PLLGKRISLVSKKNIRYEGVLYSINEQNATVALQNVKTFGTEGRELAEEGCIFVAPADTVHPYLLFRGQDIKDLHVHEQPAEEQPTQTTEP 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU5_ECTSI2.740e-22586.41Novel Sm-like protein with long N-and C-terminal d... [more]
A0A7S2DIJ2_9STRA3.590e-2536.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2EU73_9STRA4.620e-2336.11Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0XMA5_9STRA5.560e-2253.40Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B7FYW7_PHATC1.950e-2157.89Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2JUH1_9STRA1.980e-2159.34Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3L9Q7_9STRA6.230e-2161.45Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1G7E6_9STRA1.980e-2054.64Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A662XUA1_9STRA1.340e-1934.59Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1Z5JPN3_FISSO2.540e-1957.14Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:514103..519246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score654.1
Seed ortholog evalue6.1e-185
Seed eggNOG ortholog2880.D8LRU5
Preferred nameLSM14A
Model size1678
KEGG koko:K18749
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Exons9
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG1073@1,KOG1073@2759
Ec32 ortholog descriptionNovel Sm-like protein with long N- and C-terminal domains.
Ec32 orthologEc-08_002480.1
Cds size1677
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17687.1prot_Ecto-sp6_S_contig85.17687.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 514103..519246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350482.9301963-CDS-Ecto-sp6_S_contig85:514102..5145601682350482.9301963-CDS-Ecto-sp6_S_contig85:514102..514560Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 514103..514560 -
1682350482.940031-CDS-Ecto-sp6_S_contig85:514796..5149561682350482.940031-CDS-Ecto-sp6_S_contig85:514796..514956Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 514797..514956 -
1682350482.948384-CDS-Ecto-sp6_S_contig85:515432..5155671682350482.948384-CDS-Ecto-sp6_S_contig85:515432..515567Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 515433..515567 -
1682350482.9561458-CDS-Ecto-sp6_S_contig85:516140..5162691682350482.9561458-CDS-Ecto-sp6_S_contig85:516140..516269Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 516141..516269 -
1682350482.9639752-CDS-Ecto-sp6_S_contig85:516632..5168821682350482.9639752-CDS-Ecto-sp6_S_contig85:516632..516882Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 516633..516882 -
1682350482.9719331-CDS-Ecto-sp6_S_contig85:517183..5173111682350482.9719331-CDS-Ecto-sp6_S_contig85:517183..517311Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 517184..517311 -
1682350482.9797823-CDS-Ecto-sp6_S_contig85:517759..5178821682350482.9797823-CDS-Ecto-sp6_S_contig85:517759..517882Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 517760..517882 -
1682350482.9877045-CDS-Ecto-sp6_S_contig85:518429..5185601682350482.9877045-CDS-Ecto-sp6_S_contig85:518429..518560Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 518430..518560 -
1682350482.9956288-CDS-Ecto-sp6_S_contig85:519083..5192461682350482.9956288-CDS-Ecto-sp6_S_contig85:519083..519246Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 519084..519246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17687.1

>prot_Ecto-sp6_S_contig85.17687.1 ID=prot_Ecto-sp6_S_contig85.17687.1|Name=mRNA_Ecto-sp6_S_contig85.17687.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=559bp
SSVWHSFHAADMAEEGSGVPLVGSRISLISKKNIRYEGTLYNINTSDASL
ALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGS
QATPPPPPTAPVQFAQPPQPTGPPPPSGPPPLLSPAFVSQQQQPPPPPPQ
QHARAPQVNNAQQQQKRQPRALTSATSGSQRWATNGPQNGPPARQQATQA
GQRQPAPSARPAPVARGAQQRRAAPASSSPRVAQAAGQAAQQNQRRAPTG
QRPPPRSQQHQHPSQPTGAPRGRRNGTPRSRQLVNGGGAGRGAAGGTSAA
SAPARTPGAMVGTGEALLNIRARGGPATDGKGAASVPTAQEFDFQSELQK
FDKEKELAKEMGGLSVEASNSTASSGGAGGATDSVKKYNKSSFFDEISCD
VLDRAAGRQPRVTRAAEMDMNMDTFGTTGLQHARRRGGRGHNRNKPGGGG
AGGGGQGTRGGVGAGGTGAGVGAGTANGGRGGGGGGRRGAARGSGGGGRA
RGGGGGRGSTRGGYAGGGRGGAGQARPKPKGGRGRGGNAPQGQQPTPGPT
SAPQAQAV*
back to top

mRNA from alignment at Ecto-sp6_S_contig85:514103..519246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17687.1 ID=mRNA_Ecto-sp6_S_contig85.17687.1|Name=mRNA_Ecto-sp6_S_contig85.17687.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5144bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:514103..519246- (Ectocarpus species6 EcLAC_371)
TCCTCTGTGTGGCACTCTTTCCACGCGGCGGACATGGCAGAAGAAGGCTC
CGGGGTGCCCCTCGTGGGCTCTCGCATTAGCCTCATCTCCAAGAAGAACA
TTCGCTACGAGGGAACTTTGTACAACATCAACACCAGCGATGCTTCTCTG
GCACTCCAAAATGGCAAGTGTGGTGGATAATGGTTACAAAGTCTAGCCGT
TCCCTCCTCTCTTGATGTACAGCCGTAGGTGCCTCTGCGGTACACCGGCA
ACCTTTATTCCTTTCGTTTTACCAAAAGGAGAAGAGGGTTAAGGCGCCAG
GAAGGGATATGGTTGTCCATGCCATACCATGAGTTGTATTTCGTCGTTCA
CTTGGAGAAGTGTACACCAACTGACCTCGCGCACGCGATCAACCTGGCAC
CAGAGTGCCGGTTCGAACGTGCGATCGCTGCACCTACCCAGCACAGCCTC
GCGCCAACCGACTCGAGACTAGCTCCCGGTGATGGTGGCCACCGCATGCA
TGATTTACACTCCGTGACACGAATAAACAGTAGCCGCCCGGAGGCCTACT
TGAGTTCATATCTCATGACCCGCAATGTTTACATGGAGGGCGTTTTTTGT
CCTCGCTCACTCTCGATTCCCCTCCCAAACGGGTACTGCTGCTGCTGTAC
CCCTTTCCTGCTGTGAACTGCTGTGAACACATGCAGTGCGAAGCTTCGGG
ACCGAGGGGAGAGTAGAGGGACACGTCATTCCTCCAAGTCAAGTCCTTCA
TGATTTCGTGTGCTTCCGGGGACAGGACATAATGGATCTCCACGTGCACG
ACGCAGAGGCCGATGAGGTAGGTGTTAGGTTGTGTTTGTGTGTACACGAC
CAATCGCGAGGCAGCCAACACCAAAAATGTACTTCCGTTACCACAGCATG
CCTCGTGTGTTTGCATACCGGGATCCGATGATGACGCCCCGCAATCGTTG
GGGGCAGCAGCGCGGGGCTGGGTCGATGGGCGGGTACCAACTAATTGGTT
TTCGCTAGAAAGCTGTGTTCCAAGTGGATCTTTCGATGGGTCAGTCCCGT
TAATTCGTGTTTGGTATGTATCTACGATTGTCACGATTCCGTGGAGAATT
TTGACGTCGTCGTTCGCAGCAGTTATTAATTAATCGACTTGGCGGCGGAC
AAAGTTGATTTCTATTGAGTTGCGGACTCCTCGGGGCCAGTTTGTTCGAG
CGTACCTTTTCAGGGTAAGTTAGCCTGTGACCACGGGAATCGACCGCGCC
AAGTGTTGTATCAGTACGGACACATGAAGGTACTAGGTAGAGAGAGATCG
GAACGGGTTTTAATGTGAAGACAACAACAACAACAACAACAACAATGTCT
GCCTTTGAATGCAGGGAAGCCAGGCGACACCACCGCCACCGCCCACTGCT
CCAGTTCAATTCGCCCAACCACCTCAGCCGACTGGTCCTCCGCCTCCAAG
TGGCCCTCCACCCCTCCTCAGCCCCGCTTTTGTATCGGTGAGTGCCGCCT
GTTGACGGCGTGGGTCCACGCAGATCGGCGCTGACTGCTGCTGCAGCAGC
TGTTTCTTCCGAGCCCTACTTTATCGCGTCTCTTGGGAAGAGAGGACGTT
TGTATCGTGCATTCAAGCTGACACCTTTCTGACACCTTTCGTCTGTGTTG
AATGTGACAAAGTTGCTCATGATGCGAAGTTGTGGGCAAGGGAATCCTGG
TGTGAGACGGTGAGTGCTTGCTTGTCAACACATCAGTTCATTGTGTGAAG
GCGCAAGTGCTGTTTGAGGGACACTTGTTAATAGCAAGAACGAATCGTTG
TGTTTTCGCTGTCGTTCAACTGCTGTCAATTCTGATGCCCAGCATCAGCA
GCAGCCGTACCAGCCGCAGCCCCACCAGCCTCCGCCGCAGCCGCAGCGGC
AGCCGCCGCCGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAGCCC
CCGCCCCCCCCACCACAACAGCACGCGCGAGCTCCACAAGTCAACAACGC
TCAGCAGCAACAAAAGCGGCAGCCGAGAGCACTCACGAGCGCAACGTCCG
GATCCCAAAGGTGGTCTTCTCCTCACTTCGCCATTTCGGCTTCTCCTAGA
ATACAGCTCTCATGCGATACTTCAAACGCTGTCGGTTTTATTTCGTTTCA
CAAAACGAGAGATGAGTAGCCTAGCATGTCACCGAGATACGAGCTAGTGT
TTCTAATCCCGCTCGCCGATGGTGTTCTTAGCGGTAGTCACTCACACTGG
AATGTGTCGCCGTCCCTTACACCGTGGCGCCTTAGGGTTAGGTGGTGGCT
TTGGTTGATTAGAAGATATCCATTAATCTTGACCTTGTGTACGGGGTTCT
CCTCGCCTTGACAGGGCTACGAATGGGCCTCAGAATGGGCCCCCTGCTCG
GCAGCAGGCTACGCAAGCTGGCCAGAGGCAGCCAGCCCCTTCGGCAAGAC
CGGCGCCTGTAGCGCGTGGAGCACAGCAACGGAGGGCCGCGCCCGCCTCG
TCTTCGCCCCGTGTAGCACAGGCGGCTGGGCAGGCTGCTCAACAAAACCA
ACGTAGGGCCCCGACGGGACAAAGGCCGCCCCCTCGGTCACAGCAACACC
AGCACCCCTCACAGGTGCTTGATTTTGCGTGATGTGTTTATGTATGCAGG
CTTCCTTCTCCAGCAGGAGCATTTATTTCGTCCGGACAAGGTTAGCCATA
CACATACGGCTGTTGTGCCGAATTGTGTGAAATTTTGCAGATATTTCGAA
CTCATTTGATGTTCTTCCGCGATATCCTATCTTCCCAAGATGTTTCGCGT
GAGTGAGCTGCCTGCATCGACAGTTACGAGCCTGTTTGCAGAGGGTGGTA
CGGTCAGAGTAAAGCGACCCCATCAGTACCTGTTGTACCTGTGTGCCAAT
CTGTCGGTTTGATATCCGTTTTTCCCTTCAAACCATGCCGTTTCGACCCA
CAACACTGCTGTTTTTCTGGTTTGCAGCCAACGGGGGCACCGCGGGGCCG
GAGGAACGGCACACCTCGATCTCGTCAGCTAGTTAATGGGGGTGGTGCGG
GTAGGGGAGCAGCTGGTGGCACTAGCGCCGCCTCAGCCCCTGCCCGGACG
CCTGGGGTAAGAGCTCGTACAATCATAGTTTGATCTGTGCACCCTCAAGA
AAGTTGAACTGCATTTTTGTGCTCTGCAGGAATGACTAGCGAGAGGCATG
CCTTGTTGGTTTTGATGATGGACTGCTGGTCCTTCTTGTGATGGATTCAA
GTTTACCTCTCGCGGCTGACTTGCTTTGCAAGCAGTGGCAAGCTTTGTGG
TTCGTGTCTGGTTCGAGACAGTTTTGCCAGTTCTCGGAGACCCAATGGTC
ATGGCTACCCACAACGGATTGCTCACATGGTTGAGGAACGTCAACGTAGC
GTACCGCTCCTTGGTCGAACTACACCGACCGGCTGCTGATCCGAAGCTAG
GGCCTTACCACACTCGCTGTCGCTTGGCCTCGTGCAAGTGGTATAGGCAT
GCGTTGATTTATGACGGGGACGCCGTCCGGACATGTACGCATCGGACGTG
TGGATAGTTTCGTCACCCATTAAACAAGGTGCGCCATCGTTGTCTTGTTG
CTGTTGGAGTGCTGGCGGCTTTTTTTCGATCGGTGCCCTCTCTCGATGTT
GGTTGACACCGGCCTGTTGTTCCATTCAGGCGATGGTGGGCACTGGAGAA
GCCCTGCTCAATATCCGAGCCAGAGGTGGCCCGGCGACGGACGGGAAGGG
GGCGGCAAGCGTTCCCACCGCGCAGGAGTTTGACTTCCAAAGCGAGCTCC
AGAAGTTCGACAAGGTGCCTGTTACAACACTCTGTACCCATTTTGGGCAC
AAACAAGGGCGCAGTTGTCGGAAGAAACCGAGTTTCCTTCGTCATTTGTA
GTCTTCAGGCACACTTCGGTCCGGGGTGGATGGATATCATGCTATTATAG
CTATGCGAGAGCGCACTCCAGCTGGCGAGTTTTTTCAGTTTCTGTATGCC
GAGGGAGACATGTGCGTGTTGCTTGTCAGCGTAACTTAATCGTATCCAGG
AGAGTTCGAAAATGGAAAGTCTGCACGGTCTGTACCGCTCCCGGCTACGG
CGCAAAACGTGATTTTACCACGTATGGTCACGTGTTCCGTGGGATGAAAG
TTTTCGGCAGAGCGCAAGCATGGCATCAGGTTCCAGCCGGTGGCGTATCG
CAGTCTGCCTTCCTGAAGTCTATTGCAAGGTTGTATGGTAGTGCTCTCGT
TTATCGGTACCTCTCCCCACTCCTTATATTTATTTGTCAGGAAAAAGAGC
TGGCGAAGGAAATGGGGGGATTGAGCGTGGAGGCGTCCAACTCCACGGCG
TCATCGGGAGGTGCTGGAGGGGCGACGGACAGCGTGAAAAAATACAACAA
GTCTTCGTTCTTCGATGAGATTTCGTGCGACGTGTTGGACCGTGCCGCAG
GTACGGGAGGAAGAGAGTTGACGACAATTGCTTTCTTGTTTCACAGGACA
CGCGTCAAGCTGGCGAGGTTTCACGATGGAGCACAATCCAGCTGGACTCC
CTGTGTCTTGCGCACGCCTAGAGTATGTTGTCTTGGGGCAATCGCAGATG
TGTGTTGTGATGATAGGTCCGAATGTATCTTATCAATCCATGGCACAAAC
CTTCACGTCTTTCGTTTTTGTCCGACGTCTCATCAGGGCGCCAGCCGCGT
GTAACGCGCGCGGCAGAGATGGACATGAACATGGACACGTTTGGCACAAC
CGGCTTACAACACGCCCGACGCCGAGGCGGACGAGGTCACAACCGGAACA
AACCTGGAGGAGGTGGGGCCGGCGGTGGCGGCCAAGGCACCCGCGGCGGA
GTAGGAGCAGGGGGCACCGGGGCCGGGGTCGGGGCCGGTACCGCTAACGG
TGGGCGGGGAGGCGGTGGCGGTGGTCGGAGAGGAGCTGCTCGGGGTTCTG
GAGGTGGTGGCCGAGCTAGAGGCGGAGGCGGTGGCCGTGGTAGCACAAGG
GGTGGGTATGCTGGCGGTGGCAGAGGCGGGGCGGGACAGGCGCGACCAAA
GCCAAAGGGTGGGAGAGGACGGGGTGGCAACGCCCCGCAAGGTCAGCAGC
CCACGCCAGGGCCCACCTCGGCCCCTCAGGCCCAAGCGGTATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:514103..519246-

>mRNA_Ecto-sp6_S_contig85.17687.1 ID=mRNA_Ecto-sp6_S_contig85.17687.1|Name=mRNA_Ecto-sp6_S_contig85.17687.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1677bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:514103..519246- (Ectocarpus species6 EcLAC_371)
TCCTCTGTGTGGCACTCTTTCCACGCGGCGGACATGGCAGAAGAAGGCTC
CGGGGTGCCCCTCGTGGGCTCTCGCATTAGCCTCATCTCCAAGAAGAACA
TTCGCTACGAGGGAACTTTGTACAACATCAACACCAGCGATGCTTCTCTG
GCACTCCAAAATGTGCGAAGCTTCGGGACCGAGGGGAGAGTAGAGGGACA
CGTCATTCCTCCAAGTCAAGTCCTTCATGATTTCGTGTGCTTCCGGGGAC
AGGACATAATGGATCTCCACGTGCACGACGCAGAGGCCGATGAGGGAAGC
CAGGCGACACCACCGCCACCGCCCACTGCTCCAGTTCAATTCGCCCAACC
ACCTCAGCCGACTGGTCCTCCGCCTCCAAGTGGCCCTCCACCCCTCCTCA
GCCCCGCTTTTGTATCGCAGCAGCAGCAGCCCCCGCCCCCCCCACCACAA
CAGCACGCGCGAGCTCCACAAGTCAACAACGCTCAGCAGCAACAAAAGCG
GCAGCCGAGAGCACTCACGAGCGCAACGTCCGGATCCCAAAGGTGGGCTA
CGAATGGGCCTCAGAATGGGCCCCCTGCTCGGCAGCAGGCTACGCAAGCT
GGCCAGAGGCAGCCAGCCCCTTCGGCAAGACCGGCGCCTGTAGCGCGTGG
AGCACAGCAACGGAGGGCCGCGCCCGCCTCGTCTTCGCCCCGTGTAGCAC
AGGCGGCTGGGCAGGCTGCTCAACAAAACCAACGTAGGGCCCCGACGGGA
CAAAGGCCGCCCCCTCGGTCACAGCAACACCAGCACCCCTCACAGCCAAC
GGGGGCACCGCGGGGCCGGAGGAACGGCACACCTCGATCTCGTCAGCTAG
TTAATGGGGGTGGTGCGGGTAGGGGAGCAGCTGGTGGCACTAGCGCCGCC
TCAGCCCCTGCCCGGACGCCTGGGGCGATGGTGGGCACTGGAGAAGCCCT
GCTCAATATCCGAGCCAGAGGTGGCCCGGCGACGGACGGGAAGGGGGCGG
CAAGCGTTCCCACCGCGCAGGAGTTTGACTTCCAAAGCGAGCTCCAGAAG
TTCGACAAGGAAAAAGAGCTGGCGAAGGAAATGGGGGGATTGAGCGTGGA
GGCGTCCAACTCCACGGCGTCATCGGGAGGTGCTGGAGGGGCGACGGACA
GCGTGAAAAAATACAACAAGTCTTCGTTCTTCGATGAGATTTCGTGCGAC
GTGTTGGACCGTGCCGCAGGGCGCCAGCCGCGTGTAACGCGCGCGGCAGA
GATGGACATGAACATGGACACGTTTGGCACAACCGGCTTACAACACGCCC
GACGCCGAGGCGGACGAGGTCACAACCGGAACAAACCTGGAGGAGGTGGG
GCCGGCGGTGGCGGCCAAGGCACCCGCGGCGGAGTAGGAGCAGGGGGCAC
CGGGGCCGGGGTCGGGGCCGGTACCGCTAACGGTGGGCGGGGAGGCGGTG
GCGGTGGTCGGAGAGGAGCTGCTCGGGGTTCTGGAGGTGGTGGCCGAGCT
AGAGGCGGAGGCGGTGGCCGTGGTAGCACAAGGGGTGGGTATGCTGGCGG
TGGCAGAGGCGGGGCGGGACAGGCGCGACCAAAGCCAAAGGGTGGGAGAG
GACGGGGTGGCAACGCCCCGCAAGGTCAGCAGCCCACGCCAGGGCCCACC
TCGGCCCCTCAGGCCCAAGCGGTATAG
back to top