mRNA_Ecto-sp6_S_contig85.17683.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17683.1
Unique NamemRNA_Ecto-sp6_S_contig85.17683.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: D8LRU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU0_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 5.790e-127
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 3 
Query:   93 MDKLKSVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRRGT 833
            MDKLKSVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRRGT
Sbjct:    1 MDKLKSVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRRGT 247
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: A0A835Z6L9_9STRA (Snf7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6L9_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.910e-83
Identity = 178/245 (72.65%), Postives = 196/245 (80.00%), Query Frame = 3 
Query:  108 SVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXG----DAGMSELEARLNNLRRG 830
            +V GKKKPLKEI+RENKRTI RA+R++DREK NLEKQEKK++ E+KK A A QMGAV+VLAKDLVRTRNYVTKFIEFRSHLQGV LKLE VRSHEAMA AMKDVTKAMV LNKQVNVPALQKIM+EFARENER E+T             ++GDA+AED IV+QVLDEIG++  E VP AP  G A   A    A +Q V XXXXXXXXXXXXXXXXXXXXXX     DA MSELEARLNNLRRG
Sbjct:    3 NVMGKKKPLKEIMRENKRTINRAIRELDREKTNLEKQEKKIISEMKKAAAANQMGAVRVLAKDLVRTRNYVTKFIEFRSHLQGVALKLEVVRSHEAMASAMKDVTKAMVQLNKQVNVPALQKIMMEFARENERQEMTSELMGDALDDVMNEEGDADAEDAIVNQVLDEIGITMGENVPVAPQGGGALDTAAEPAAQKQQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAQMSELEARLNNLRRG 247
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: A0A7S3K1A5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1A5_9STRA)

HSP 1 Score: 215 bits (548), Expect = 3.370e-64
Identity = 123/240 (51.25%), Postives = 161/240 (67.08%), Query Frame = 3 
Query:  108 SVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            + +G++ PLKE+LR+NKR I +A+R++D+E+ NLEKQE+KL+ +I+K AK GQMG VK++AKDLVRTR Y+TKFIE RSHL  V LKL+TV+S EAMA AMK VT AM+ +NK VNVP +QKIML F RENER+ELT             ++GD E +++IV QVLDEIG++F + VPEAPT          A+AA +P                        GD  +S+LE RLNNLR+
Sbjct:    3 NAWGRQVPLKEVLRKNKREIQKAIRELDKERGNLEKQEQKLIADIRKFAKEGQMGPVKIMAKDLVRTRTYITKFIELRSHLNAVSLKLQTVKSQEAMASAMKSVTTAMIRMNKAVNVPTVQKIMLNFQRENERAELTQEVMGDLLDDAMEEEGDEEEQEKIVGQVLDEIGINFGDSVPEAPTI--------QAQAATEPATNQKTAEPASIGAPSGGGG----GDHTVSDLEVRLNNLRK 230
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: A0A8J2SQU1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SQU1_9STRA)

HSP 1 Score: 214 bits (546), Expect = 7.370e-64
Identity = 142/240 (59.17%), Postives = 178/240 (74.17%), Query Frame = 3 
Query:  108 SVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            + +G+K PLKE+LR+NKR I +AVR++DRE+ANLEKQE KLV +IKK AK GQMG VK++AKDLVRTR Y+TKFIE RSHL  V LKL+TV+S EAMA AMK VT+AMV +NK VN+P++QKIM+ F  ENER+E+T            A+DGD++ E++IV  VLDEIG+SF + +P+AP A  A+  A        PVA      XXXXXXXXXXXXXXX  D  +S+LEARLNNLR+
Sbjct:    3 NTWGRKVPLKEVLRKNKREINKAVRELDRERANLEKQELKLVADIKKYAKDGQMGPVKIMAKDLVRTRTYITKFIELRSHLNAVALKLQTVKSQEAMARAMKSVTEAMVRMNKTVNIPSIQKIMVNFQVENERAEMTQEVMGDMLDDAMAEDGDSDEEEKIVGAVLDEIGISFGDTIPDAPDAMAARPQAA-------PVAVADAVGXXXXXXXXXXXXXXX--DTTVSDLEARLNNLRK 233
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: F0XW09_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW09_AURAN)

HSP 1 Score: 213 bits (542), Expect = 2.650e-63
Identity = 133/240 (55.42%), Postives = 166/240 (69.17%), Query Frame = 3 
Query:  108 SVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            + +G+K PLKE+LR+NKR I +A+R++DRE+ANLEKQE+KL+ +IKK A  GQMG+VK++AKDLVRTR Y+TKFIE RSHL  V LKL+TV+S EAMA AMK VT+AM+ +NK VNVPA+QKIM+ F  ENER+E+T              DGD E E++IV  VLDEIG+SF + VP APT    Q  A    AA   VA  XXXXXXX                 +S+LEARLNNLR+
Sbjct:    3 NTWGRKVPLKEVLRKNKREINKAMRELDRERANLEKQEQKLIADIKKYAGQGQMGSVKIMAKDLVRTRTYITKFIELRSHLGAVSLKLQTVKSQEAMASAMKSVTQAMIKMNKTVNVPAVQKIMMNFQLENERAEMTQEMMGDMLDDAMEQDGDEEEEEKIVGAVLDEIGISFGDTVPAAPTLAPNQPQAADVPAAPVAVADAXXXXXXXADAST------------VSDLEARLNNLRK 230
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: W7T515_9STRA (Charged multivesicular body protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T515_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.010e-63
Identity = 144/239 (60.25%), Postives = 166/239 (69.46%), Query Frame = 3 
Query:  123 KKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTA----GVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            KKPLKEI+RENKR I RA+R++DRE+ NLEK EKKL+ +IKK AK  QMGAVK +AKDLVRTRNY TKFIE RSHLQG  LKLETVRSHEAMA AM+ VT AMVS+NKQVNVPAL KIM +FARENE+SELT XXXXXXXXXXX        +++IV  VL E+G+   + VPEAP A      A  AA S+   R+P A                       D  M++LEARLNNLRR
Sbjct:   15 KKPLKEIMRENKRMINRAIRELDRERNNLEKNEKKLIMDIKKYAKENQMGAVKTMAKDLVRTRNYQTKFIEMRSHLQGAALKLETVRSHEAMASAMRSVTSAMVSMNKQVNVPALTKIMTDFARENEKSELTXXXXXXXXXXXXXXXXXXXXQERIVGAVLTELGLDMTDAVPEAPGAVPNTATATAAATSSGGQREPQALGA--------------------DPTMTDLEARLNNLRR 233
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: A0A1E7FZX6_9STRA (Snf7-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FZX6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.800e-58
Identity = 122/241 (50.62%), Postives = 156/241 (64.73%), Query Frame = 3 
Query:  108 SVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEA-PTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            ++ GK KPLKE+LRENKR ITRA+R++DREK  LE++EKKL  EIKK AKAGQMG VK++AKDLVRTR Y+TKFIE RSHLQG  LKL+TV+SH AMA AMK    AM  +NK V+VPA+ K+M +F +EN ++E+               + + E E+ IV+QVLDEIG+SF E +P A PT  +  GA  SA   +  ++                       D  +SELEARLNNL+R
Sbjct:    3 NILGKDKPLKEVLRENKRMITRAIRELDREKTGLEREEKKLTMEIKKCAKAGQMGPVKIMAKDLVRTRQYITKFIEMRSHLQGCALKLQTVKSHHAMAEAMKSTASAMHKMNKAVDVPAINKMMQDFEKENMKTEMMQEIMGDAIDDVLGGEENEEEEEAIVNQVLDEIGISFGEDLPSAAPTNAI--GAQESAPTGKVAMSETPGGGPSD--------------DPALSELEARLNNLKR 227
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: A0A7S1BRV2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BRV2_9STRA)

HSP 1 Score: 199 bits (506), Expect = 4.750e-58
Identity = 118/242 (48.76%), Postives = 159/242 (65.70%), Query Frame = 3 
Query:  108 SVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPT--AGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            +VFGK K LKE++RENKR I +++R++DREK  LEK+EK+L+ +IKK AKAGQ  +V+++AKDLVRTR Y+TKFIE RSHLQGV LKL+TV+S  AMA AM    K+M+  NK +++P + K+M +F +ENE+SEL               +GDAE  ++IVSQVLDEIG+ FDE +P+AP   AGV+   A   E+  QP A                       DA  ++LEARLNNL++
Sbjct:    3 AVFGKGKTLKEVIRENKREINKSIRELDREKNALEKEEKRLITDIKKQAKAGQHNSVRIMAKDLVRTRQYITKFIEMRSHLQGVALKLQTVKSQTAMAEAMTAAGKSMMKFNKAIDIPRINKMMADFMKENEKSELVQEMLGDAIDDTLEQEGDAEETEKIVSQVLDEIGIDFDENIPDAPLKPAGVS---ATPTESKAQPEAIGAN-------------------DAAFNDLEARLNNLKK 222
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: A0A7S2I4D7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I4D7_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.170e-56
Identity = 125/243 (51.44%), Postives = 154/243 (63.37%), Query Frame = 3 
Query:  108 SVFGK-KKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVA--QGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            +VFG  KK LKE LRENKR I RAVR++DRE+A LE++EK+L  EIKK AK  QMGAVK++AKDLVRTR Y+TKFIE RSHLQ   LKL+TV+S +AM  AM   TKAMV++NK V+VPA+ K+M EF REN +SE+               DG  E E+ IV QVLDEIG++F E VP+AP+ G    Q A  S  A + P A                       D  + +LEARLNNL+R
Sbjct:    3 NVFGSNKKTLKEQLRENKRMINRAVRELDRERAALEREEKRLTIEIKKMAKQQQMGAVKIMAKDLVRTRQYITKFIEMRSHLQSCALKLQTVKSQQAMTEAMASTTKAMVAMNKTVDVPAINKMMAEFERENAKSEMMQEIMADAMDDAMYQDGAEEEEEAIVGQVLDEIGINFSEEVPDAPSLGTGTKQSATVSNGAEKVPEAAGGN-------------------DPALDDLEARLNNLKR 226
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Match: A0A448ZIR9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIR9_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.650e-56
Identity = 121/241 (50.21%), Postives = 153/241 (63.49%), Query Frame = 3 
Query:  108 SVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEIKKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHEAMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGXXXXXXXXXXXADDGDAEAEDQIVSQVLDEIGVSFDEGVPEA-PTAGVAQGAAGSAEAARQPVAXXXXXXXXXXXXXXXXXXXXXXGDAGMSELEARLNNLRR 827
            ++ GK+KPLKE+LRENKR I RA+R++DREK  LE++EK+L  EIKK AK GQMG V ++AKDLVRTR Y+TKFIE RSHLQG  LKL+TV+SH AMA AMK   KAM  +NK V+VPA+ K+M +F REN ++E+               + + E E  +V+QVLDEIG+SF E +P A PTA V     G +EAA                            D  +SELEARLNNL+R
Sbjct:    3 NILGKEKPLKEVLRENKRMINRAIRELDREKNGLEREEKRLTLEIKKAAKEGQMGPVNIMAKDLVRTRQYITKFIEMRSHLQGCALKLQTVKSHHAMADAMKSTAKAMHKMNKAVDVPAINKMMQDFERENAKTEIMQEIMGDTIDDALGGEENEEEEXAVVNQVLDEIGISFGEDLPSAAPTAPV-----GVSEAASPGKVAMSASGGGGDM------------DPQLSELEARLNNLKR 226
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU0_ECTSI5.790e-127100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6L9_9STRA1.910e-8372.65Snf7-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3K1A5_9STRA3.370e-6451.25Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2SQU1_9STRA7.370e-6459.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0XW09_AURAN2.650e-6355.42Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7T515_9STRA3.010e-6360.25Charged multivesicular body protein n=3 Tax=Monodo... [more]
A0A1E7FZX6_9STRA2.800e-5850.62Snf7-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S1BRV2_9STRA4.750e-5848.76Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2I4D7_9STRA1.170e-5651.44Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448ZIR9_9STRA1.650e-5650.21Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:482961..486717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score380.9
Seed ortholog evalue4.4e-103
Seed eggNOG ortholog2880.D8LRU0
Preferred nameCHMP2A
Model size1329
KEGG rclassRC00822
KEGG koko:K01598,ko:K12191
KEGG ReactionR03269
KEGG Pathwayko00770,ko01100,ko04144,ko04217,map00770,map01100,map04144,map04217
KEGG ModuleM00120,M00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006996,GO:0006997,GO:0006998,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008593,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010324,GO:0010458,GO:0010564,GO:0010639,GO:0010646,GO:0010648,GO:0010824,GO:0010826,GO:0010941,GO:0010948,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0017157,GO:0019058,GO:0019068,GO:0019538,GO:0019904,GO:0019941,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0023057,GO:0030117,GO:0030163,GO:0031090,GO:0031210,GO:0031410,GO:0031468,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032509,GO:0032511,GO:0032879,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034067,GO:0034613,GO:0034622,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040017,GO:0042058,GO:0042059,GO:0042221,GO:0042493,GO:0042886,GO:0043162,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0045746,GO:0045786,GO:0045921,GO:0046599,GO:0046600,GO:0046605,GO:0046606,GO:0046618,GO:0046755,GO:0046907,GO:0048285,GO:0048475,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048583,GO:0048585,GO:0050000,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0050997,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051235,GO:0051258,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051494,GO:0051503,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051651,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060548,GO:0060627,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070405,GO:0070507,GO:0070676,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090169,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901673,GO:1902115,GO:1902116,GO:1902186,GO:1902188,GO:1903047,GO:1903530,GO:1903532,GO:1903541,GO:1903543,GO:1903722,GO:1903723,GO:1903900,GO:1903902,GO:1904669,GO:1904896,GO:1904903
Exons4
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3230@2759
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-08_002430.1
EC4.1.1.36
Cds size744
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17683.1prot_Ecto-sp6_S_contig85.17683.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 483454..486625 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350482.528028-UTR-Ecto-sp6_S_contig85:482960..4834531682350482.528028-UTR-Ecto-sp6_S_contig85:482960..483453Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 482961..483453 -
1682350482.5719922-UTR-Ecto-sp6_S_contig85:486625..4867171682350482.5719922-UTR-Ecto-sp6_S_contig85:486625..486717Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 486626..486717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350482.5395951-CDS-Ecto-sp6_S_contig85:483453..4836901682350482.5395951-CDS-Ecto-sp6_S_contig85:483453..483690Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 483454..483690 -
1682350482.5481224-CDS-Ecto-sp6_S_contig85:485330..4854801682350482.5481224-CDS-Ecto-sp6_S_contig85:485330..485480Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 485331..485480 -
1682350482.5562437-CDS-Ecto-sp6_S_contig85:486017..4861851682350482.5562437-CDS-Ecto-sp6_S_contig85:486017..486185Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 486018..486185 -
1682350482.5641274-CDS-Ecto-sp6_S_contig85:486436..4866251682350482.5641274-CDS-Ecto-sp6_S_contig85:486436..486625Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 486437..486625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17683.1

>prot_Ecto-sp6_S_contig85.17683.1 ID=prot_Ecto-sp6_S_contig85.17683.1|Name=mRNA_Ecto-sp6_S_contig85.17683.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=248bp
MDKLKSVFGKKKPLKEILRENKRTITRAVRDIDREKANLEKQEKKLVGEI
KKNAKAGQMGAVKVLAKDLVRTRNYVTKFIEFRSHLQGVGLKLETVRSHE
AMAGAMKDVTKAMVSLNKQVNVPALQKIMLEFARENERSELTGELIGDTL
DDALADDGDAEAEDQIVSQVLDEIGVSFDEGVPEAPTAGVAQGAAGSAEA
ARQPVAAAEASGGGGGGPQPPAPPGAGGGDAGMSELEARLNNLRRGT*
back to top

mRNA from alignment at Ecto-sp6_S_contig85:482961..486717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17683.1 ID=mRNA_Ecto-sp6_S_contig85.17683.1|Name=mRNA_Ecto-sp6_S_contig85.17683.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3757bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:482961..486717- (Ectocarpus species6 EcLAC_371)
ATGCTCCCCACGCACGGACAACAGCAAGAACGTGCGTGGTTGATACGGAT
ATTTCGCTCAACTCTTGTTGAAAACCTCCGCACTACAGAGTCATGGACAA
GCTCAAGTCTGTTTTTGGCAAGAAGAAGCCTTTGAAAGAAATTCTGAGGG
AAAACAAGCGGACAATCACCCGGGCAGTGAGAGACATCGACAGGGAGAAG
GCGAACCTGGAGAAACAAGAGAAGAAGCTCGTTGGAGAGATCAAGAAGAA
TGCCAAGGCTGGACAGATGGGAGCGGTGAAGGTGCGAACTGGACGAACTC
GCCACAACGTCCTGCTAGTGTTTCAACTTCAACTTAAACTGCTTTGTCTG
CGGTCCCTCTTCCTTGATTTGACATCTCCCCGTGTCAGGACGTCAGGATA
CATCAAATGTCATCAGTGTTCGCTCTGTGATGTATCTGATACGCAAATAC
AAGTAGCCTCTGCACAGGCAAGCGTGCTCCTATGTGTTGCATGGTCCTAG
ACAACTCGTTGTGTGTTACTCCTTCTGTGCAGGTGCTGGCGAAAGACCTT
GTCCGAACACGGAATTATGTGACCAAGTTCATCGAGTTTAGGAGCCATCT
TCAAGGGGTGGGGCTCAAGCTCGAGACTGTCAGGTCTCATGAAGCCATGG
CGGGTGCAATGAAGGATGTCACCAAGGCGATGGTTTCTCTAAACAAGCAG
GTGAGCATACCGATGTTTGTTCTCTTTTTTTGCGTGTCCGGGGGGCAGAT
ACTGTAAGTGTGGGAAAACACATATTTTAAGTACAAGTCTACCTTTAGTC
TACCAGTCTGCTGTATGTGACACATGGCGTGGAATAATTGTGTTCGTGCT
TCACTACTTTCGTGTTTGACGGTAGGTTCGCTCGCAGTTTTCACGCAACC
CTGCATAGGCCACCGGGGCGACCGGCTTAGGATAGGGTAGACGTTTATGG
TGGTAAGGAATGGGTGGCCGAGGGACAGCAGTGCTGGAGCTCCTGATGAA
GTCCCGTTGCCCGTTTGTTTATTTTGAGTCCAGATCCCCACTTATTAGCA
GTTTAGGGGCGGCCGCACTGGTGGGCATTTGCTCCAACATGGAGTATTCG
TTCTCTTCGTTTAATTTTGGCGCAGATATATTTAGATACCAATCGTGACC
TTCGTCGACTAGCGATATGCATGTAGACTATGTGTGTATATCGCAACGAA
ACACTTATTTTGTTCGGTGCCCAAATCGTTCAATCAGGTCAACGTACCTG
CGCTGCAGAAGATCATGCTGGAGTTCGCGAGGGAGAATGAACGGTCGGAG
CTAACAGGGGAGCTAATCGGTGATACCCTCGACGACGCACTTGCCGATGA
TGGCGATGCGGAGGCAGAAGACCAGATTGTCAGCCAGGTCAGTTCTGAAA
CCCGTTGTATGAGAGTGCCGGGGTCTCGATTAAAACTAAAATGCGTTGCC
GAGACTTGCACCAGTGGGCAGCGAATACTGGTGCATATGCATTCCCATAG
ACGGTACGCGCGGATGATGTTCTCACTAAAAGTTACCGCCAGGCATTGCA
AATACTTGTATTTTGTCCCTGTCACACCCGACCATGCTTCCAGCATTCCC
CGTGTTACCGTGGTCATGAAGACAAACACGAGGGACGGACGTCCGTGCCA
CGTCCAAGACTTGCTGCAATGAGTTCACAGCATGAAGCCGTTCTGTTTCG
AAATGTACGCGATAGAGCGGAGGTGGGTATTTGACTCCATGGCCAAAATG
CTGGGGGTGGCGTTCGAAACTATATATTTGATCATTTCCACACGTGATTA
CTTGACACGTTCACATTGCGTGCCGTGCTGCAAACTTACAAAAACGTTGT
CTTCTTCAATTTGTTTTAGCTCTGAAATGGCTCCATTTATTTTTTTTTTA
CGGATTTTCCTGCCCTCTCAGCGCTCCTACCCCCCTCTCTCGACGCCTGA
CAACGCAGCGTTGCTTCCCTAAAACACTCTTCTCGATGAAAGTTCCGATT
GTGCGTAGCTCTCCGGTGCACATTGCAAGCTGGGCACACTGATGATGGGC
ACGCCGCGGGTTGGGCACCCATTTTCATCGATCAACGTCGTGGGCAGACC
CTCTTCTTGCGATCACTCCGTTGTTTCCCCACCACGCCGTCTACTCTCGT
TGCCGTATGGTCTCACTCGTTAATCATCTGTCTTCCACAACATTCACACC
ATTATTCCCGTCTGGACGCGTGGACACTGTTTTAGATATATTCGACTCTT
CGCTAACTCGCCGCACACACTCTCTACCTTTCTCACGCATTTTCATTTTA
AGCGATCGACATCCTGAATGGATAGACACTATTACACCTAACTTTCCCAT
CAGTCCTTCACCAAGCCCTCTCTGTCTCTCTCCTCGTCACTGTCTATTGG
ACCTACTCGTTCATTTGTCGTCGACCGCACACACTGTTGGTTATTTGTTG
CTCTCGTTGTCATGACCTATTACATGCATGCATGCAACGCGTTGATATCG
TCCTTTGGAAATATTCCGATTTTGAACTATCAACAAGAAGACAATCGATT
TCTCTTCGTTCAGCGGCGACGGGAAGCGGTAATGATCCGAAAATCTACCA
TAGTCACTTAGGGACGACGGACCACGTGTAGTCTGTATTTTTGTCGTTGA
TGGCACTCAACTTCACTATTTAGTGTCAGACAAACAAGGCAGTGTTGCGT
CCGTCCTCGTTCCGGCCTACATCAGGTGTACTACGGTAGATATATTGGTG
GCGGCCGCGCGGCAAGCGCCAGTAAAAAATGAAGTTAGTCTGCTCTTCCA
AATGTAGATACATGTCTAGATGTGCCCGACCTTCCTCTGGTTGCATTCTC
CAATCAACACAATGCAACACAGCAGTGGTAAGCGCATGTTTCAGCTACTG
CCTGGCCTAGGGTTACTGTATCGATCTTTGCCTTGTCGCTCAATTCGGCG
GTGGCGCGAAAGCGCCTAGAACCTTGGATGTATTATCGCTTTAATCCTCT
GCTGCCGTGGACAATATTCATGGTCAGGTCTTGGATGAGATCGGAGTGTC
ATTCGATGAGGGGGTACCAGAAGCTCCAACGGCTGGAGTGGCGCAAGGGG
CTGCCGGATCGGCGGAAGCGGCTAGACAGCCCGTTGCTGCTGCTGAAGCT
AGCGGGGGAGGTGGGGGAGGGCCACAGCCACCAGCACCCCCAGGGGCTGG
TGGGGGAGACGCCGGAATGAGCGAACTGGAGGCGCGTCTCAATAACCTAC
GCCGTGGAACCTAGGGCCGCAAACTAACTCCATCTGTCACGAAAACGCAG
GCAACTTACAAGCACTGTGAAAGTAAGACGGGGATTGTGGAGGTGGCCTC
GGCCCTAAAGTAGTGTGCGCGAAGGAGGCGAAAAGCGCTGGCGGTTTCTG
GCGAATACTATTTGCTTTTGGACTGGCTGTGTAAGCCAAGACGTTCGGCA
TTCGCGAGGGACCCGTTGCGTCAGGTGGTGCCTGCCTGCAGGGGGACCGT
CGGTGCCGTTGTATCTAACCCCGTAGCCCAGCGTATTCTAACGCACAGTC
GATGCGTTGGTTGAGGTATTTCCTTGACTACGTCTTGAGGTATTTCCTTG
ACTACGTCTTTCTAGTCTGCGCCCTCCAAACGGTAGCACTATGTACGGCC
TTGGTAGCCTTCCGCGGACACCAAAAATTGCCACCTCAAAGGTTTGTGGG
CCGACGTACTATAATATAGCATGTCTCAACGTGGTCGCCTGCCACGTACT
TCCGGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:482961..486717-

>mRNA_Ecto-sp6_S_contig85.17683.1 ID=mRNA_Ecto-sp6_S_contig85.17683.1|Name=mRNA_Ecto-sp6_S_contig85.17683.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:482961..486717- (Ectocarpus species6 EcLAC_371)
ATGGACAAGCTCAAGTCTGTTTTTGGCAAGAAGAAGCCTTTGAAAGAAAT
TCTGAGGGAAAACAAGCGGACAATCACCCGGGCAGTGAGAGACATCGACA
GGGAGAAGGCGAACCTGGAGAAACAAGAGAAGAAGCTCGTTGGAGAGATC
AAGAAGAATGCCAAGGCTGGACAGATGGGAGCGGTGAAGGTGCTGGCGAA
AGACCTTGTCCGAACACGGAATTATGTGACCAAGTTCATCGAGTTTAGGA
GCCATCTTCAAGGGGTGGGGCTCAAGCTCGAGACTGTCAGGTCTCATGAA
GCCATGGCGGGTGCAATGAAGGATGTCACCAAGGCGATGGTTTCTCTAAA
CAAGCAGGTCAACGTACCTGCGCTGCAGAAGATCATGCTGGAGTTCGCGA
GGGAGAATGAACGGTCGGAGCTAACAGGGGAGCTAATCGGTGATACCCTC
GACGACGCACTTGCCGATGATGGCGATGCGGAGGCAGAAGACCAGATTGT
CAGCCAGGTCTTGGATGAGATCGGAGTGTCATTCGATGAGGGGGTACCAG
AAGCTCCAACGGCTGGAGTGGCGCAAGGGGCTGCCGGATCGGCGGAAGCG
GCTAGACAGCCCGTTGCTGCTGCTGAAGCTAGCGGGGGAGGTGGGGGAGG
GCCACAGCCACCAGCACCCCCAGGGGCTGGTGGGGGAGACGCCGGAATGA
GCGAACTGGAGGCGCGTCTCAATAACCTACGCCGTGGAACCTAG
back to top