mRNA_Ecto-sp6_S_contig85.17657.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17657.1
Unique NamemRNA_Ecto-sp6_S_contig85.17657.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A6H5JA52_9PHAE (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JA52_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 1.170e-148
Identity = 208/222 (93.69%), Postives = 210/222 (94.59%), Query Frame = 2
Query:  131 MIRLKKKXXXXXXXXXXXAMEVDEETPSNAAAQPKAGEEKAAGKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            MIRLKKK           AME+DEETPSNAAAQPKA EEKAAGKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTF+IPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI
Sbjct:    1 MIRLKKKQDDEKAAEAAAAMEIDEETPSNAAAQPKADEEKAAGKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFTIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 222          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A6V1TYK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TYK4_HETAK)

HSP 1 Score: 299 bits (765), Expect = 4.460e-99
Identity = 154/232 (66.38%), Postives = 186/232 (80.17%), Query Frame = 2
Query:  131 MIRLKKKXXXXXXXXXXX----AMEVDEETPSNAAA------QPKAGEEKAAGKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            MIRLKKK      XXXXX    AM+V++E+ +   A      + K GE K++G + +LGIGG++++ G AK T  K+TPGE+RIQKDIA+LDGG+VA ITFPNPNNLTSF+V+V PD+G W+GA+YHFTF+IPA+YPH+PPKV C TKIYHPNINLQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLN EAAELYR++  QFER V+R+L G  +  E F+RLI
Sbjct:    1 MIRLKKKQEEAERXXXXXXXSEAMDVEQESTNGGDAKADDQDESKGGESKSSGGVKLLGIGGKKSRTGGAKKT-KKRTPGELRIQKDIAELDGGNVAVITFPNPNNLTSFEVRVTPDTGMWRGATYHFTFAIPAMYPHEPPKVHCHTKIYHPNINLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNREAAELYRNDARQFERVVRRSLQGYSVGAEQFERLI 231          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A835YZU8_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZU8_9STRA)

HSP 1 Score: 297 bits (761), Expect = 7.920e-99
Identity = 140/180 (77.78%), Postives = 159/180 (88.33%), Query Frame = 2
Query:  257 GKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            G + +LGIGGRR K+ + KA   KKTPGEIRIQKDIA+LDGG+VA ITFP+PNNL  F+V V PDSG+WKGASY+FTF+IP  YPHDPPKVLC TKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYR+NI++F+R V+RTL GC M+G+ F RL+
Sbjct:   30 GGVKLLGIGGRRTKK-TGKAP-PKKTPGEIRIQKDIAELDGGTVATITFPDPNNLCKFEVLVTPDSGYWKGASYNFTFTIPGHYPHDPPKVLCNTKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRNNIAEFQRIVRRTLQGCNMNGQVFPRLV 207          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A7S3M2N2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2N2_9STRA)

HSP 1 Score: 293 bits (750), Expect = 5.800e-97
Identity = 142/201 (70.65%), Postives = 166/201 (82.59%), Query Frame = 2
Query:  194 VDEETPSNAAAQPKAGEEKAAGKLHVLGIGGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            V+  +P N A +PK  EE+ AG L +LGIGG++ K G+ KA G K+TPGEIRIQKDIA+LDGGSVA++ FPNPN+LT+F V V PDSGFW GA Y FT +IPALYPH+PPKV C TKIYHPNINL+GNVCLNILRE+WKPVLDINAVIYG+IYLFYEPNP+DPLN EAA+LYR + +QFER VKRTL G    GE F+RLI
Sbjct:   23 VNGNSPVNVAGEPK--EEEGAGGLSLLGIGGKQIKSGAKKA-GKKRTPGEIRIQKDIAELDGGSVAQVDFPNPNDLTNFTVTVSPDSGFWSGAKYVFTVAIPALYPHEPPKVTCRTKIYHPNINLEGNVCLNILREEWKPVLDINAVIYGMIYLFYEPNPDDPLNREAADLYRTDKNQFERVVKRTLQGYSHAGEAFERLI 220          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A7S3KW38_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KW38_9STRA)

HSP 1 Score: 277 bits (709), Expect = 7.920e-91
Identity = 126/180 (70.00%), Postives = 153/180 (85.00%), Query Frame = 2
Query:  260 KLHVLGIGGRRAKRGSAKATGTKK-TPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            K+ +LG+GG++ K  +   TG KK TPGEIRIQKDIA+LDGG VA I FPNPN+LT+F V+V PDSG+W+GA+YHF+F++P+ YPH+PPKV C TKIYHPNI+LQG VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R ++ QFER V RTL G V+ G  F++L+
Sbjct:   35 KVSLLGVGGKKKKNENGSGTGGKKRTPGEIRIQKDIAELDGGKVATIEFPNPNDLTAFDVRVCPDSGYWQGATYHFSFNVPSHYPHEPPKVECHTKIYHPNIDLQGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVNRTLRGGVLDGVQFEKLV 214          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A7R9W2H1_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2H1_9STRA)

HSP 1 Score: 278 bits (711), Expect = 1.910e-90
Identity = 128/180 (71.11%), Postives = 152/180 (84.44%), Query Frame = 2
Query:  260 KLHVLGIGGRRAK-RGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            K+ +LGIGG++ K +G   ++  K+TPGEIRIQKDIA+LDGG VA I FPNPN+LT+F V+V PD+GFWKGASY FTF IP  YPH PPKV CETKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAAEL+R +++QF+R V RTL+G ++    FQRL+
Sbjct:   82 KVSILGIGGKKKKDKGENSSSSKKRTPGEIRIQKDIAELDGGKVATIDFPNPNDLTTFHVRVTPDTGFWKGASYLFTFQIPDHYPHSPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAAELFRRDVNQFQRLVSRTLSGGILDNVQFQRLV 261          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: B7G8G3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8G3_PHATC)

HSP 1 Score: 275 bits (703), Expect = 7.900e-90
Identity = 135/223 (60.54%), Postives = 165/223 (73.99%), Query Frame = 2
Query:  131 MIRLKKKXXXXXXXXXXXAMEVDEETPSNAAAQPKAGEEKAAGKLHVLGIGGRR-AKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            M+ LKKK           A + D +TP   +       +    K+ +LG+GG++  K G  KAT  K++PGEIRIQKDIA+LDGG+VA I FPN N+LTSF V + PDSG+WKGA+YHFTF+IP  YPH PPKV C+TKIYHPNI+LQG VCLNILREDWKPVLDIN V+YGLIYLFYEPNP+DPLNHEAAEL+R ++ QFER V RTL G ++ G  F+RL+
Sbjct:    1 MLALKKKREEAKAAAEAAAKDADADTPIVDSGVGTHSPDN--NKVSLLGVGGKKQTKNGECKAT-KKRSPGEIRIQKDIAELDGGNVATIDFPNANDLTSFHVAISPDSGYWKGATYHFTFTIPPHYPHSPPKVECQTKIYHPNIDLQGKVCLNILREDWKPVLDINGVVYGLIYLFYEPNPDDPLNHEAAELFRKDVRQFERLVSRTLRGGILDGVQFERLV 220          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: K0T069_THAOC (UBC core domain-containing protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T069_THAOC)

HSP 1 Score: 273 bits (698), Expect = 4.230e-89
Identity = 131/181 (72.38%), Postives = 149/181 (82.32%), Query Frame = 2
Query:  260 KLHVLGIGGRRAKRGSAK-ATGTKK-TPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            K+ +LGIGG++ K      A+G KK TPGEIRIQKDIADLDGG VA I FPNPNNLT+F+V + PDSG+WK A+Y+F F IP  YPH PPKV CETKIYHPNINL+G VCLNILREDWKPVLDINAVIYGLI+LFYEPNP+DPLNHEAA+L+R +I QFER V+RTL G VM G  F RLI
Sbjct:   38 KVSLLGIGGKKKKANDGNGASGKKKRTPGEIRIQKDIADLDGGKVANIEFPNPNNLTAFEVSITPDSGYWKNATYNFKFDIPDHYPHTPPKVHCETKIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIFLFYEPNPDDPLNHEAADLFRRDIRQFERLVQRTLRGGVMDGVHFDRLI 218          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A448YW25_9STRA (UBC core domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW25_9STRA)

HSP 1 Score: 272 bits (696), Expect = 8.520e-89
Identity = 126/194 (64.95%), Postives = 153/194 (78.87%), Query Frame = 2
Query:  218 AAAQPKAGEEKAAGKLHVLGIGG-RRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            + + P    E+  G++ + GIGG ++ K+G + AT  KKTPGEIRIQKDI +LDGG VAE+TFP PN+LTSF V + PD+G+WKGA Y F F +PA YPH PPKV C+T IYHPNI+LQG VCLNILREDW+PVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R +I  FER V RTL G  + G TF+RL+
Sbjct:   27 SVSAPSESTEEGGGQVSLFGIGGQKKTKKGESSAT--KKTPGEIRIQKDIGELDGGKVAEVTFPKPNDLTSFNVSITPDTGYWKGARYEFEFKVPAHYPHSPPKVECKTSIYHPNIDLQGKVCLNILREDWRPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDIQSFERLVNRTLRGGTLDGVTFERLV 218          
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Match: A0A6T7JLN4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JLN4_9STRA)

HSP 1 Score: 272 bits (696), Expect = 9.750e-89
Identity = 125/180 (69.44%), Postives = 150/180 (83.33%), Query Frame = 2
Query:  260 KLHVLGIGGRR-AKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSFKVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNVCLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQFERTVKRTLAGCVMHGETFQRLI 796
            K+ +LGIGG++ A +G   + G K+TPGEIRIQKDIA+LDGG VA I FPNPN+LT F V + PD+GFWKGA Y FTF IPA YPH+PPKV C T+IYHPNINL+G VCLNILREDWKPVLDINAVIYGLIYLFYEPNP+DPLNHEAA+L+R +++QF R V+RTL G ++ G  F+RL+
Sbjct:   43 KVSLLGIGGKKNASKGENGSGGKKRTPGEIRIQKDIAELDGGKVAIIDFPNPNDLTMFHVAITPDTGFWKGAKYDFTFQIPAHYPHNPPKVTCGTQIYHPNINLEGKVCLNILREDWKPVLDINAVIYGLIYLFYEPNPDDPLNHEAADLFRKDVNQFNRLVQRTLRGGILDGVPFERLV 222          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA52_9PHAE1.170e-14893.69UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A6V1TYK4_HETAK4.460e-9966.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YZU8_9STRA7.920e-9977.78Ubiquitin-conjugating enzyme/RWD-like protein n=1 ... [more]
A0A7S3M2N2_9STRA5.800e-9770.65Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3KW38_9STRA7.920e-9170.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9W2H1_9STRA1.910e-9071.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B7G8G3_PHATC7.900e-9060.54Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
K0T069_THAOC4.230e-8972.38UBC core domain-containing protein n=2 Tax=Thalass... [more]
A0A448YW25_9STRA8.520e-8964.95UBC core domain-containing protein n=1 Tax=Pseudo-... [more]
A0A6T7JLN4_9STRA9.750e-8969.44Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:286181..289421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score420.6
Seed ortholog evalue4.5e-115
Seed eggNOG ortholog2880.D8LRS2
Preferred nameUBE2M
Model size868
KEGG rclassRC00005,RC00726,RC00836,RC00837,RC01726
KEGG koko:K00053,ko:K00573,ko:K00698,ko:K10579
KEGG ReactionR02335,R03051,R04439,R04440,R05068,R05069,R05071
KEGG Pathwayko00290,ko00520,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,ko04120,map00290,map00520,map00770,map01100,map01110,map01130,map01210,map01230,map04120
KEGG ModuleM00019,M00570
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008589,GO:0009719,GO:0009725,GO:0009733,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042221,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043523,GO:0043525,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045116,GO:0045879,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0061650,GO:0061654,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901214,GO:1901216,GO:1901564
Exons6
EggNOG free text desc.NEDD8 transferase activity
EggNOG OGsKOG0420@1,KOG0420@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-08_002220.1
EC1.1.1.86,2.1.1.77,2.4.1.16
Cds size669
COG Functional cat.O
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17657.1prot_Ecto-sp6_S_contig85.17657.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 286311..289352 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350480.4928436-UTR-Ecto-sp6_S_contig85:286180..2863101682350480.4928436-UTR-Ecto-sp6_S_contig85:286180..286310Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 286181..286310 +
1682350480.5516434-UTR-Ecto-sp6_S_contig85:289352..2894211682350480.5516434-UTR-Ecto-sp6_S_contig85:289352..289421Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 289353..289421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350480.505698-CDS-Ecto-sp6_S_contig85:286310..2863371682350480.505698-CDS-Ecto-sp6_S_contig85:286310..286337Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 286311..286337 +
1682350480.5133648-CDS-Ecto-sp6_S_contig85:287621..2878231682350480.5133648-CDS-Ecto-sp6_S_contig85:287621..287823Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 287622..287823 +
1682350480.521075-CDS-Ecto-sp6_S_contig85:287999..2880791682350480.521075-CDS-Ecto-sp6_S_contig85:287999..288079Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 288000..288079 +
1682350480.5286329-CDS-Ecto-sp6_S_contig85:288379..2884661682350480.5286329-CDS-Ecto-sp6_S_contig85:288379..288466Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 288380..288466 +
1682350480.536472-CDS-Ecto-sp6_S_contig85:288639..2887261682350480.536472-CDS-Ecto-sp6_S_contig85:288639..288726Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 288640..288726 +
1682350480.5441685-CDS-Ecto-sp6_S_contig85:289166..2893521682350480.5441685-CDS-Ecto-sp6_S_contig85:289166..289352Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 289167..289352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17657.1

>prot_Ecto-sp6_S_contig85.17657.1 ID=prot_Ecto-sp6_S_contig85.17657.1|Name=mRNA_Ecto-sp6_S_contig85.17657.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=223bp
MIRLKKKQDDEKAAEAAAAMEVDEETPSNAAAQPKAGEEKAAGKLHVLGI
GGRRAKRGSAKATGTKKTPGEIRIQKDIADLDGGSVAEITFPNPNNLTSF
KVKVQPDSGFWKGASYHFTFSIPALYPHDPPKVLCETKIYHPNINLQGNV
CLNILREDWKPVLDINAVIYGLIYLFYEPNPEDPLNHEAAELYRDNISQF
ERTVKRTLAGCVMHGETFQRLI*
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mRNA from alignment at Ecto-sp6_S_contig85:286181..289421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17657.1 ID=mRNA_Ecto-sp6_S_contig85.17657.1|Name=mRNA_Ecto-sp6_S_contig85.17657.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3241bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:286181..289421+ (Ectocarpus species6 EcLAC_371)
AAAAGTAAACAGTAAAGCAGGTCATCACGCCACACCACCTTTCGCTCTTG GCACCCCGCTCTATCTCATCTCTCCGTACTGGAAGCAGTGCCAGTGCCAG TGCTAGTAGCGGAAAAAAAGAGGACGCGAAATGATCCGGCTGAAGAAGAA ACAAGATGTAAGAGCGCTCTATGAATTTTTCTCGATTGACTTCAAAACTA CCGCCAGCTCTCCGTCAGTGTTGCCTGCTTTGTCGAGCTTGTTCTTTCTG TCCGATCAAGAGGGCGATGGCAATCCAGTTTCGAGGTCCGACAAATTATT GCAATTCGGGGGCAACAAGGGGACCACTGCTGGCTGTGCTGTTACCCTGT TGTATTCTGTGAACGAGTGAGAAGTCCTTTTGAGTTCAAACAGCACATGG TGTCCCAACGCGGGCCCCCTGTCTCCCAACAGCAGTAGTCTGCGGCAGCA GCATTAGTTGCGTAGCATCCAGCCGAGAGTGAGAGTGATCTCGAGATTTT GCATGCTTCCTTTGTCTGGCCTTGTCACAGAAGAGTATGGCGTGCTATTG TAATGGTATCTGCAAAGTCCGAAGGATGTTCTCTCACTTGGCCCCCATTC GCCGTTTAATTACTGCCTGTAAAGTACTTTGGGAACGAGGGACCGGCGGA TGACCTCCTCATGTTGCAATGAGCATCGCAGGCATGGGAACGGCCCATGA GAACGCGACAGCAGTTGTTAGACCTACAATCAGCAATCTTGGAGCACGAC CGTGATTAATTTGCATCTTGAAATCGGTCTTGATTAAATCCCTTGGATTC AGTTTACGCCCACAGCGATTATGAGTAGTTGATTGAGTTATTTGGGGCCG GTTTGAACTACAACTGGAATGATCGGGGGTGGGAATATATTTCGAGCCAA GAAGGCTATTGGTACCGATTTGAGTTATGTTTTGGAGTTTATTTTCTTGT GTTTTGGAGTTCATGAAGACATGGCATAGTCACAACCACGGGGGCTAATA GATATACTTGTAGCAATGCCAAGTGGATGGTACGGGATGTTCCCATGGAA TGAGGTAGAGCGGAATACCGGGTGATTTGTGTGTTACGTAAAGTGGATTT CCAGGGATGTACCAGGTACCCCTGTTGTATACGGCGTCGCCCCCTCAACG GGGCTTGTGTGTGCGTATGTGGATGCAACTAATCACAACAGGTTTTTCTC CTCGGCGCGAGCCCGCCGAGTTGCCGACACCCTATTCAACACACTGTCTT GCGATAAGCTACCCCCAGTTCGGATCATCCTAACATCCTCCTGTGCGACC CCCGGCGTGTACGTCGAACATATGCTTGCAAGTGCCAAGAAGGAAGACAA GACGAAACAGAGACACACACCGCACCCCACTCACACCCGTCTGTGCTCGA CAAAAATTATGTGCGGAACCGCGTGGTGCCATTGATTTCAGGATGAGAAG GCCGCTGAGGCAGCAGCGGCAATGGAGGTAGACGAGGAAACACCATCGAA CGCGGCCGCTCAACCAAAAGCGGGCGAGGAGAAGGCCGCAGGGAAGCTTC ACGTTCTGGGGATTGGCGGCCGAAGGGCCAAGAGAGGCAGTGCGAAGGCA ACCGGAACAAAGAAGACGCCGGGAGAGATTCGTATACAGAAGGGTGAGAG AGCCTGGACAGCATGGACGCAGCAGCTATTGCACGGTAAACGCCTGAGCA GCGAGTACGTTCTCGGACATCTCGTCATCATTACATGTGCAGTGTGATCA AGGTTCGATACACATTCATTGAACACCCTGATTTGTGTTGTGCCAATCGT GCTGCTCTCGGAACTGCAGACATTGCGGACTTGGATGGCGGAAGCGTAGC AGAGATCACTTTCCCCAACCCCAACAACCTTACGTCCTTCAAGGTCAAGG TGAGAATCGATACGTAGGGCTTTGATCATCTCAACTTTTGGGAGCTGGCG ACCCGAACTTCTTGCACCCCGGGCGCGATGTAATGCCAGTTAAGTCCATT GATCATCATCGTTGACTACGTTACGGAAAGACCAGAGCATGTAACGTAAT TAAGGACCTGGACCACGCTTCTGGGTTTTCCATTAATGTTCTTTTATGAG CATGCACGGCGGTACTTTTTGGGTTTACGTCACACACCTCTGCGTCCTTT ACATCCGCACTTACTCTTCCGATCGTGTGTGTGGAATGTTTTGCCACAGG TGCAGCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCACTTTACCTTT AGTATTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGAGCAACGCTTC AAAGGTTAAGCACACAACCAGGTTGTGTACACAACAGTAAGCACAATCGT ACGGGCCAGTTTTCCTCAAGTCCTTTTGCTCCGCCCTCGTCGTTGTCCAC TTGTTTTTTCGGATTTTTTTCTGAGAGTTTTCCCCATCCGGTCCTTGCTC GCGGTGCAGGTGCTGTGCGAGACCAAAATCTACCACCCGAATATAAACCT GCAGGGGAACGTGTGCCTCAACATCTTGCGGGAAGACTGGAAGCCGGTGA GTATTCGTGGCTGTGCCGACATGCGGTTGTCCGAGTTGTTGGAACGCTTT TGGGGTTTGTCCTGTCCTGTACCTGGATTCGAGTATCAGCTGTCGCACGA ACAACCTTCTGTCAAGTGTGATGGCGTCAAACGCCCGGCATGTGTATCCC CAAGTCGGTCTCGTGGGTGGGTTGCACACGGCAGGCTTGGCGCAATTGCG ACTTGTTGTCTCCAAGCATGCGGCTTTGGGCAAGCTTGGTCGTGAGAGGG ACCGGTACGTGCTGTGCTTTTGCAGCACGAGCGGACTACGCCGTACCAGT ATCCCCCAAGGCCGGCCGCCACCGAGGATGACTACAGCGGCCGCATTTGG TTTGATTTACTTTTAGATGTTTATTTTTATGTAAGCTCATGAGCTCGATT CCTTCATAAAAGCTGGGATTATCCGTCGCTGTGCAGGTGTTGGATATCAA CGCGGTCATCTACGGGCTCATCTATCTGTTCTACGAGCCAAACCCCGAGG ACCCCCTCAACCATGAAGCTGCAGAGCTCTACCGCGACAACATAAGCCAA TTCGAGCGAACAGTGAAGAGGACTCTCGCAGGCTGCGTCATGCACGGGGA GACATTCCAACGACTGATTTGACTTGGTGACATTCTGCTCAGTGTGTGTT TTTGTTGTTTTTGGACGCTGAGGGTTGAGCAAAGACGTTTT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:286181..289421+

>mRNA_Ecto-sp6_S_contig85.17657.1 ID=mRNA_Ecto-sp6_S_contig85.17657.1|Name=mRNA_Ecto-sp6_S_contig85.17657.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=669bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:286181..289421+ (Ectocarpus species6 EcLAC_371)
ATGATCCGGCTGAAGAAGAAACAAGATGATGAGAAGGCCGCTGAGGCAGC
AGCGGCAATGGAGGTAGACGAGGAAACACCATCGAACGCGGCCGCTCAAC
CAAAAGCGGGCGAGGAGAAGGCCGCAGGGAAGCTTCACGTTCTGGGGATT
GGCGGCCGAAGGGCCAAGAGAGGCAGTGCGAAGGCAACCGGAACAAAGAA
GACGCCGGGAGAGATTCGTATACAGAAGGACATTGCGGACTTGGATGGCG
GAAGCGTAGCAGAGATCACTTTCCCCAACCCCAACAACCTTACGTCCTTC
AAGGTCAAGGTGCAGCCGGACAGCGGGTTCTGGAAGGGCGCGTCGTACCA
CTTTACCTTTAGTATTCCTGCGCTGTACCCTCACGACCCACCCAAAGTGC
TGTGCGAGACCAAAATCTACCACCCGAATATAAACCTGCAGGGGAACGTG
TGCCTCAACATCTTGCGGGAAGACTGGAAGCCGGTGTTGGATATCAACGC
GGTCATCTACGGGCTCATCTATCTGTTCTACGAGCCAAACCCCGAGGACC
CCCTCAACCATGAAGCTGCAGAGCTCTACCGCGACAACATAAGCCAATTC
GAGCGAACAGTGAAGAGGACTCTCGCAGGCTGCGTCATGCACGGGGAGAC
ATTCCAACGACTGATTTGA
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