mRNA_Ecto-sp6_S_contig85.17655.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17655.1
Unique NamemRNA_Ecto-sp6_S_contig85.17655.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig85.17655.1 vs. uniprot
Match: A0A6H5JCL8_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCL8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.140e-12
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = -1 
Query:  554 LAQCLENGEPLIRRANSSDNGGPGVGGEGEFTPNGSKRKRSC 679
            LA+CLENGEPLI RANSSDNG PGVG +GE TPNGSKRKR+C
Sbjct:  736 LARCLENGEPLIGRANSSDNGEPGVGSQGEMTPNGSKRKRTC 777
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCL8_9PHAE2.140e-1283.33DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:273078..273756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size679
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-08_002200.3
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350476.872334-UTR-Ecto-sp6_S_contig85:273077..2732911682350476.872334-UTR-Ecto-sp6_S_contig85:273077..273291Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 273078..273291 +
1682350476.8927062-UTR-Ecto-sp6_S_contig85:273636..2737561682350476.8927062-UTR-Ecto-sp6_S_contig85:273636..273756Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 273637..273756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350476.8827894-CDS-Ecto-sp6_S_contig85:273291..2736361682350476.8827894-CDS-Ecto-sp6_S_contig85:273291..273636Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 273292..273636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17655.1prot_Ecto-sp6_S_contig85.17655.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 273292..273636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17655.1

>prot_Ecto-sp6_S_contig85.17655.1 ID=prot_Ecto-sp6_S_contig85.17655.1|Name=mRNA_Ecto-sp6_S_contig85.17655.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
MKRRVSSCFQRTKTKTKPCSLTRRCFETTPPPFGHEGANLSGVCCNLCSN
LSRVYPAGNGRVEHTLLGYYELWEKTYQGENQPTRTVVYKVTIHCRLINT
TPPKVWFARSALST*
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mRNA from alignment at Ecto-sp6_S_contig85:273078..273756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17655.1 ID=mRNA_Ecto-sp6_S_contig85.17655.1|Name=mRNA_Ecto-sp6_S_contig85.17655.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=679bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:273078..273756+ (Ectocarpus species6 EcLAC_371)
GTCGCATTCTTGAAAATACGCGGCCGTTGACCTCGTCTATTTCCACCGCC
CGTCCCTTGTCGCGCTTCTCTCGGCATGTGCGTGTTGTGTTCTATCAAAA
TCTCAAGTCATCGCTGAAGGCTTTTGATGTCCCGTCGTGTGCCAATTCAA
AGATAAGGAGGCGAGGGACTGCACCCCGCGGGGGCTGAGGTCCTCATGAT
CCACAAGAGACGACATGAAGAGACGAGTAAGTTCCTGCTTTCAAAGGACC
AAGACCAAGACCAAGCCATGTTCACTGACAAGACGTTGTTTTGAAACTAC
CCCCCCCCCTTTCGGTCACGAGGGTGCGAATCTCTCTGGGGTATGTTGTA
ACCTGTGTTCGAATCTCTCCAGGGTCTATCCCGCCGGGAACGGCAGAGTT
GAACATACATTATTAGGATATTACGAGCTATGGGAAAAAACATACCAAGG
TGAGAATCAACCTACTCGTACAGTGGTTTACAAGGTTACCATCCATTGTA
GACTCATAAATACAACGCCACCAAAAGTTTGGTTTGCGCGAAGCGCACTC
TCAACATGACCTCTTCCTCTTGGACCCGTTGGGCGTGAATTCTCCTTCAC
CGCCGACTCCTGGCCCTCCATTGTCCGAGGAGTTCGCCCTTCTGATAAGC
GGCTCACCGTTCTCGAGGCACTGTGCCAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:273078..273756+

>mRNA_Ecto-sp6_S_contig85.17655.1 ID=mRNA_Ecto-sp6_S_contig85.17655.1|Name=mRNA_Ecto-sp6_S_contig85.17655.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:273078..273756+ (Ectocarpus species6 EcLAC_371)
ATGAAGAGACGAGTAAGTTCCTGCTTTCAAAGGACCAAGACCAAGACCAA
GCCATGTTCACTGACAAGACGTTGTTTTGAAACTACCCCCCCCCCTTTCG
GTCACGAGGGTGCGAATCTCTCTGGGGTATGTTGTAACCTGTGTTCGAAT
CTCTCCAGGGTCTATCCCGCCGGGAACGGCAGAGTTGAACATACATTATT
AGGATATTACGAGCTATGGGAAAAAACATACCAAGGTGAGAATCAACCTA
CTCGTACAGTGGTTTACAAGGTTACCATCCATTGTAGACTCATAAATACA
ACGCCACCAAAAGTTTGGTTTGCGCGAAGCGCACTCTCAACATGA
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