mRNA_Ecto-sp6_S_contig85.17627.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17627.1
Unique NamemRNA_Ecto-sp6_S_contig85.17627.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig85.17627.1 vs. uniprot
Match: D8LS30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS30_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 1.270e-12
Identity = 60/70 (85.71%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    1 MPAQALDMSQQPLLNAQAMSFEPPAGGAXXXXXXXXXXXXXXXXXXXXXXXXX---NATGRRAGAGRQNF 201
            MPAQALDMSQQPLLNAQA+SFEPPAGGA     XXXXXXXXXXXXXXXXXXXX   NATGR AGAGRQNF
Sbjct:    1 MPAQALDMSQQPLLNAQAISFEPPAGGAASGIPXXXXXXXXXXXXXXXXXXXXXXXNATGRGAGAGRQNF 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LS30_ECTSI1.270e-1285.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:73240..74135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001940.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350476.6415517-CDS-Ecto-sp6_S_contig85:73239..733921682350476.6415517-CDS-Ecto-sp6_S_contig85:73239..73392Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 73240..73392 -
1682350476.6518567-CDS-Ecto-sp6_S_contig85:74084..741351682350476.6518567-CDS-Ecto-sp6_S_contig85:74084..74135Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 74085..74135 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17627.1prot_Ecto-sp6_S_contig85.17627.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 73240..74135 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17627.1

>prot_Ecto-sp6_S_contig85.17627.1 ID=prot_Ecto-sp6_S_contig85.17627.1|Name=mRNA_Ecto-sp6_S_contig85.17627.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=68bp
MPAQALDMSQQPLLNAQAMSFEPPAGGAASGIPAGGGGVYYPPPPPQQQQ
QQQNATGRRAGAGRQNF*
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mRNA from alignment at Ecto-sp6_S_contig85:73240..74135-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17627.1 ID=mRNA_Ecto-sp6_S_contig85.17627.1|Name=mRNA_Ecto-sp6_S_contig85.17627.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=896bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:73240..74135- (Ectocarpus species6 EcLAC_371)
ATGCCGGCGCAGGCTTTGGACATGTCTCAGCAGCCGCTGCTGAATGCCCA
GGTAGGCGTGCGTTTTGTGTTTGCTAGTTGACGTTTTTTTTGGTATGTTC
GACGGTGTGTCGTTGTTGGTAGTAGTGTTGTTGGTGTTGGTGTTGGTGTT
GTTGCTATGCATAGTCTGATTTTATAATCAGATTTACATACAAGTAGTCT
GATTTATAATCGGACTACCCGTTAGAGATAGCACCATAGTCGAAGGGGAC
GGGTTGCAGTCCTTTTTGAAGTCTTTGCAGTGGGTGGATGCTGGGCTTTT
TTTGAGTCTACTTGAGCCTAGACATTTAGTGTGGTCAGTGTTGTTATTGT
TACTGTCGTTATCGTTGTCGTTGTCGTTGTCGTTGGTGATGGTGGCGGCG
TCGACGGAGAGCAACCGTGGTGCTACCTCAATGAGTTGGAGCCCCTATTC
CGCTGTAGATTGCTGACGCGAGCCACCTGAAAGCTACCATATCCCTCCCG
AGCAATCACCTACTGCTGTACAAGTAGTATAGTTTGATAATTTGAAGTTC
GAGTTTTTGTTCCTCGAAACCGCTGGCCATATTTCCAGCACCTCTTCGGC
AAAACCGGAGGCCCCGCGAAATCATTAAGTGCATGGAGGCTACCCCAATG
TTGTTGGCGGTGGTGGTTGTGCACTTCCTCACACCGAACCCCTCCCCCTC
TCCGTCCATTCTTCGTGTTTGTCTTGGTGCGGTATTGTCACAGGCCATGT
CGTTTGAGCCGCCTGCAGGCGGCGCTGCTAGCGGTATCCCTGCCGGCGGC
GGCGGCGTGTATTACCCCCCCCCGCCCCCTCAACAACAGCAACAGCAACA
GAACGCGACGGGCAGAAGGGCGGGAGCTGGTCGGCAAAACTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:73240..74135-

>mRNA_Ecto-sp6_S_contig85.17627.1 ID=mRNA_Ecto-sp6_S_contig85.17627.1|Name=mRNA_Ecto-sp6_S_contig85.17627.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:73240..74135- (Ectocarpus species6 EcLAC_371)
ATGCCGGCGCAGGCTTTGGACATGTCTCAGCAGCCGCTGCTGAATGCCCA
GGCCATGTCGTTTGAGCCGCCTGCAGGCGGCGCTGCTAGCGGTATCCCTG
CCGGCGGCGGCGGCGTGTATTACCCCCCCCCGCCCCCTCAACAACAGCAA
CAGCAACAGAACGCGACGGGCAGAAGGGCGGGAGCTGGTCGGCAAAACTT
CTAG
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