mRNA_Ecto-sp6_S_contig85.17623.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig85.17623.1
Unique NamemRNA_Ecto-sp6_S_contig85.17623.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17623.1 vs. uniprot
Match: D7G7U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U5_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 2.410e-60
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = -1 
Query:    1 FVTQLRVRGRWHKYDCLAGGAVTSSDTFDADWNSSSQCMLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADDRSPSGWNHQRPSQH 279
            FVTQLRVRGRWHKYDCLAGGAVTS+DTFDADWNSSSQCMLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADD SPSG NHQRPSQH
Sbjct:   24 FVTQLRVRGRWHKYDCLAGGAVTSTDTFDADWNSSSQCMLAYLKTSLCVATPPLYTRHEEQHHNSPSGRQPGHRHHADDSSPSGRNHQRPSQH 116
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17623.1 vs. uniprot
Match: D7FSJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.910e-19
Identity = 36/37 (97.30%), Postives = 37/37 (100.00%), Query Frame = -1 
Query:  169 FVTQLRVRGRWHKYDCLAGGAVTSSDTFDADWNSSSQ 279
            FVTQLRVRGRWHKYDCLAGGA+TSSDTFDADWNSSSQ
Sbjct:   24 FVTQLRVRGRWHKYDCLAGGAITSSDTFDADWNSSSQ 60
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17623.1 vs. uniprot
Match: A0A6H5KDI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.570e-16
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = -1 
Query:  115 FVTQLRVRGRWHKYDCLAGGAVTSSDTFDADWNSSSQCMLAYLKTSLCVATPPLY 279
            FV+Q+ +RGRWHK DCL GG VTSSD F + W+ SS  ML YL++S+CVATPP Y
Sbjct:  126 FVSQVWIRGRWHKDDCLQGGIVTSSDAFGSGWHVSSVHMLVYLRSSICVATPPPY 180
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17623.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.810e-14
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -1 
Query:  115 GRWHKYDCLAGGAVTSSDTFDADWNSSSQCMLAYLKTSLCVATPPLY 255
            GRWHKYDCL GG VTSSD +D+ W+ SS  ML YL++++CVATPP Y
Sbjct:  576 GRWHKYDCLQGGIVTSSDAYDSGWHVSSVHMLVYLRSAICVATPPPY 622
[Close]
BLAST of mRNA_Ecto-sp6_S_contig85.17623.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.940e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -3 
Query:  152 RKMAQVRLPGGRSRNFFRHLRCRLEQLVAVYAGVP 256
            RKMAQVRLPGGRS NFFRH+RCRLEQLVAVYAGVP
Sbjct:  432 RKMAQVRLPGGRSGNFFRHVRCRLEQLVAVYAGVP 466
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig85.17623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7U5_ECTSI2.410e-6096.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSJ9_ECTSI2.910e-1997.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDI5_9PHAE1.570e-1663.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV6_9PHAE4.810e-1465.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I1_ECTSI8.940e-1294.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig85contigEcto-sp6_S_contig85:18752..19030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size279
Hectar predicted targeting categorymitochondrion
Exons1
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350477.0076985-UTR-Ecto-sp6_S_contig85:18751..188231682350477.0076985-UTR-Ecto-sp6_S_contig85:18751..18823Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig85 18752..18823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350477.0177524-CDS-Ecto-sp6_S_contig85:18823..190301682350477.0177524-CDS-Ecto-sp6_S_contig85:18823..19030Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig85 18824..19030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig85.17623.1prot_Ecto-sp6_S_contig85.17623.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig85 18824..19030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig85.17623.1

>prot_Ecto-sp6_S_contig85.17623.1 ID=prot_Ecto-sp6_S_contig85.17623.1|Name=mRNA_Ecto-sp6_S_contig85.17623.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=69bp
MLRGALMIPARRASVVGVMTVARLSPRRAVMMLFLVSRVQRWGGDAQRSL
KVRQHTLRRAVPVGIEGV*
back to top

mRNA from alignment at Ecto-sp6_S_contig85:18752..19030-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig85.17623.1 ID=mRNA_Ecto-sp6_S_contig85.17623.1|Name=mRNA_Ecto-sp6_S_contig85.17623.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:18752..19030- (Ectocarpus species6 EcLAC_371)
ATGCTGCGAGGGGCGTTGATGATTCCAGCCCGAAGGGCTTCTGTCGTCGG
CGTGATGACGGTGGCCCGGTTGTCGCCCAGAAGGGCTGTTATGATGTTGT
TCCTCGTGTCGCGTGTACAGCGGTGGGGTGGCGACGCACAAAGAAGTCTT
AAGGTACGCCAGCATACACTGCGACGAGCTGTTCCAGTCGGCATCGAAGG
TGTCTGAAGAAGTTACGGCTCCTCCCGCCAGGCAGTCGTACTTGTGCCAT
CTTCCTCTGACACGCAGTTGAGTGACGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig85:18752..19030-

>mRNA_Ecto-sp6_S_contig85.17623.1 ID=mRNA_Ecto-sp6_S_contig85.17623.1|Name=mRNA_Ecto-sp6_S_contig85.17623.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp6_S_contig85:18752..19030- (Ectocarpus species6 EcLAC_371)
ATGCTGCGAGGGGCGTTGATGATTCCAGCCCGAAGGGCTTCTGTCGTCGG
CGTGATGACGGTGGCCCGGTTGTCGCCCAGAAGGGCTGTTATGATGTTGT
TCCTCGTGTCGCGTGTACAGCGGTGGGGTGGCGACGCACAAAGAAGTCTT
AAGGTACGCCAGCATACACTGCGACGAGCTGTTCCAGTCGGCATCGAAGG
TGTCTGA
back to top