mRNA_Ecto-sp6_S_contig84.17621.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17621.1
Unique NamemRNA_Ecto-sp6_S_contig84.17621.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 722 bits (1864), Expect = 5.060e-263
Identity = 344/357 (96.36%), Postives = 346/357 (96.92%), Query Frame = 1
Query:    1 MLASTLLECETLCLFSALRVNVLGEPCNEVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVTQRGAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRVKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPADFSYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPLVDAAKIVEGQGWASHVNDGRHFHKLVPIE 1071
            MLASTLLECE L LFS LRVNVLGEPCN+VVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEV QR APGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVR KNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNP DF YSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSL MSRRARPVMSRLGVP+VDAAKIVEGQGWAS  NDGRHFHKLVPIE
Sbjct:    1 MLASTLLECERLFLFSMLRVNVLGEPCNDVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQRSAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRAKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLHMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 357          
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 490 bits (1262), Expect = 2.160e-171
Identity = 231/278 (83.09%), Postives = 254/278 (91.37%), Query Frame = 1
Query:  244 MIGDSTMSHQFGAICGFMGEREGRRFDPEVTQRGAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRVKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVR-AASVGNP-ADFSYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPLVDAAKIVEGQGWASHVNDGRHFHKLVPIE 1071
            M+GDSTMSHQ+GAICGFMGEREGRR+DPE  Q G+PGCCMDTLPKED GEGGGGRGLCF++DQFRFLDPKR  RTSVDAYYFGSGLHLLHMYPHWPEM+PMEPLRVQSWLNYESLLEGVV+ VR K+G +V+V FMTNHAIADE F GEYK+IRAAYREG GN TIRAECQ ++N QV+ AASV +   DFSYSDWHG PDIAEY+ +PEGQGLFTVDTYCEEAILDRRGSLQ+SRRARPVMSRLGVPLVDAA+IVEGQGWAS+ +DGRHFHK+VPIE
Sbjct:    1 MVGDSTMSHQYGAICGFMGEREGRRYDPEKAQHGSPGCCMDTLPKEDEGEGGGGRGLCFEFDQFRFLDPKRAARTSVDAYYFGSGLHLLHMYPHWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVRVVFMTNHAIADERFQGEYKDIRAAYREGPGNTTIRAECQDQNNTQVKQAASVKDAHGDFSYSDWHGAPDIAEYMVYPEGQGLFTVDTYCEEAILDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIE 278          
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: D7FKK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK9_ECTSI)

HSP 1 Score: 386 bits (992), Expect = 6.600e-133
Identity = 181/189 (95.77%), Postives = 182/189 (96.30%), Query Frame = 1
Query:    1 MLASTLLECETLCLFSALRVNVLGEPCNEVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVTQRGAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQS 567
            MLASTLLECE L LFS LRVNVLGEPCN+VVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEV Q  APGCCMDTLPKEDGGEGGGGRGLCFQYD FRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQS
Sbjct:    1 MLASTLLECERLFLFSMLRVNVLGEPCNDVVCGYWWKNYLSGEDGNAWFDSWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVIQGRAPGCCMDTLPKEDGGEGGGGRGLCFQYDHFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQS 189          
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: D7FKK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK8_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 1.500e-93
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 1
Query:  649 MTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPADFSYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPLVDAAKIVEGQGWASHVNDGRHFHKLVPIE 1071
            MTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNP DF YSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVP+VDAAKIVEGQGWAS  NDGRHFHKLVPIE
Sbjct:    1 MTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 141          
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: D7FJP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP2_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.970e-70
Identity = 113/170 (66.47%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  172 AKLDLLASIAEEREDTETE-PFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVTQRGAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDPKRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRVKNGQDVKVAFMTNHAIADEL 678
            AKLD+LA++ E ++    E PFRVLM+GDSTM HQ+GA+CGFMGER GRR++P                     E GGGRGLCF+ DQ RFLDPKR   TSVDAYYFGSGLHLLHM PHWPEM+PMEPLRVQSWLNYESLLEGVV+ VR K+GQ+VK+ FMTNHAIAD+L
Sbjct:   63 AKLDVLAALVENQQGGRREQPFRVLMVGDSTMRHQYGALCGFMGERGGRRYNPR--------------------EEGGGRGLCFELDQLRFLDPKRAGETSVDAYYFGSGLHLLHMLPHWPEMNPMEPLRVQSWLNYESLLEGVVQAVRKKSGQNVKLIFMTNHAIADQL 212          
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 3.970e-63
Identity = 146/387 (37.73%), Postives = 192/387 (49.61%), Query Frame = 1
Query:    4 LASTLLECETLCLFSALRVNVLGEPCNEVVCGYWWKNYLS-GEDGNAWFDSWNKFMQAKLDLLASIAE-EREDTET---------EPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVTQRGAPGCCMDTLPKEDGGEGG-------------------GGRGLCFQYDQFRFLDPKR-PDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRVKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPADFSYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPLVDAAKIVEGQGWASHVNDGRHFHKLVPIE 1071
            LAS L  C  L +    R  V  +P  + + G  WKN+LS G  G+ WF  WN   Q ++D +A++AE ER   +          +PFRV M+GDSTM  Q G IC F+ ER G  FD    Q     CC+DTLP+E   EGG                   GGRG+CF++   +FL+P +     S DA YFG GLHLL        M  ME  R Q+WL YE  LE  VE  R   G   ++ F T+H I D ++ G ++E+  AYR+G+     + E       QVR                             G G   VD YC   ++DR GS  ++RR+RPVMSRLGVP V+   IV+ Q WA+  +DGRH+H LVP+E
Sbjct:  149 LASVLAACGVLVMH---RAGVDAQP-EKYMSGARWKNFLSSGVSGDTWFTRWNSMAQPRIDKVAALAEAERNGGDASXXXXXXTQQPFRVAMVGDSTMMQQHGVICAFLAERAGSLFDAAGHQ---DECCIDTLPREPAEEGGDANDHGTPALDLGNHTANGGGRGVCFRHSFQKFLEPPQWASLGSPDAVYFGRGLHLL-------PMDNMEGERAQAWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGLFREMVDAYRDGDMGVISKCE------GQVR----------------------------RGYG---VDAYCRLGLMDRNGSEVLNRRSRPVMSRLGVPFVEGDLIVKDQEWATPKSDGRHYHMLVPVE 484          
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.320e-40
Identity = 116/348 (33.33%), Postives = 155/348 (44.54%), Query Frame = 1
Query:   67 LGEPCNEVVCGYWWKNYL-SGEDGNAWFDSWNKFMQAKLDLLASIAEEREDT----------ETEPFRVLMIGDSTMSHQFGAICGFMGEREGRRFDPEVTQRGAPGCCMDTLPKEDGGEG------------------GGGRGLCFQYDQFRFLDPKRPDRT-SVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRVKNGQDVKVA-----------FMTNHAIA--------------DELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPADFSYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSR 945
            L    ++ + G  WKN+L SG  G+ WF  WN  +Q ++D LA++AE   +             +PFRV MIGDSTM  Q G IC F+ ER G  FD    Q     CC+DTLP+E   EG                   GGRG+CF+    +FL+P   +   S DA YFGSGLHLLHM       H ME  R Q WL YE  LE  VE  R   G   +             F   HA++              D ++ G ++E+  AYR+G+              V+V +   G  +            +A  +T PEG G   VD YC   ++DR GS  ++R
Sbjct:   88 LDAQSDKYMSGAQWKNFLESGVGGDTWFTRWNAMVQPRIDKLAALAETERNWGDASSSGGRGTQQPFRVAMIGDSTMMQQHGVICAFLAERAGSLFDAAGHQ---DECCIDTLPREPAEEGEDANDHGTPALDLHNHTVNGGRGVCFRRSFQKFLEPPEWESLGSPDAVYFGSGLHLLHM-------HVMEAERAQGWLTYERDLESAVETYRAAGGAGFRGQLQESLTIHAHFFSRMHAVSPRSTSVWVATGGSVDSVYQGLFREMVDAYRDGD--------------VEVISKCEGKMS-----------QLAAGVTGPEGYG---VDAYCRLGLMDRNGSEVLNR 397          
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Match: D7FP29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP29_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 7.170e-16
Identity = 58/198 (29.29%), Postives = 86/198 (43.43%), Query Frame = 1
Query:  478 AYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGVVEGVRVKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAECQREDNVQVRAASVGNPADFSYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPLVDAAKIVEGQGWASHVNDGRHFHKLVPIE 1071
            A YFG G+HLLH++P   +     P  + SW NY++LL   + G R  N  D+K+ +MT H I +  + GE+K     Y+                    R      P    +          E I   E      ++  C + +    G   ++ +   VM  +GVP+V A  +VEGQ WA+   DGRHF  L P+E
Sbjct:   75 AMYFGCGMHLLHLFP--VQESADVPRAMLSWENYDTLLSERIGGWREVN-PDIKLVYMTTHTIDESKYYGEWKTALEGYK-------------------ARDPVFLEPCKLKF----------EEILPSESPLRDDLEQVCIDTVFGAHGVQLLNEQGLAVMKEMGVPVVPAHMLVEGQQWATPDGDGRHFPYLTPLE 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJN9_ECTSI5.060e-26396.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP0_ECTSI2.160e-17183.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKK9_ECTSI6.600e-13395.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKK8_ECTSI1.500e-9396.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP2_ECTSI1.970e-7066.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0U4_ECTSI3.970e-6337.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXH8_9PHAE1.320e-4033.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP29_ECTSI7.170e-1629.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:770590..778052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1113
Hectar predicted targeting categoryother localisation
Exons9
Cds size1113
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17621.1prot_Ecto-sp6_S_contig84.17621.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 770590..778052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350476.5122166-CDS-Ecto-sp6_S_contig84:770589..7706311682350476.5122166-CDS-Ecto-sp6_S_contig84:770589..770631Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 770590..770631 -
1682350476.5230951-CDS-Ecto-sp6_S_contig84:773065..7731921682350476.5230951-CDS-Ecto-sp6_S_contig84:773065..773192Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 773066..773192 -
1682350476.53606-CDS-Ecto-sp6_S_contig84:773749..7739311682350476.53606-CDS-Ecto-sp6_S_contig84:773749..773931Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 773750..773931 -
1682350476.547707-CDS-Ecto-sp6_S_contig84:774398..7745221682350476.547707-CDS-Ecto-sp6_S_contig84:774398..774522Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 774399..774522 -
1682350476.566271-CDS-Ecto-sp6_S_contig84:774899..7749711682350476.566271-CDS-Ecto-sp6_S_contig84:774899..774971Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 774900..774971 -
1682350476.5790796-CDS-Ecto-sp6_S_contig84:775989..7762251682350476.5790796-CDS-Ecto-sp6_S_contig84:775989..776225Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 775990..776225 -
1682350476.5893855-CDS-Ecto-sp6_S_contig84:777033..7772081682350476.5893855-CDS-Ecto-sp6_S_contig84:777033..777208Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 777034..777208 -
1682350476.5992398-CDS-Ecto-sp6_S_contig84:777754..7778461682350476.5992398-CDS-Ecto-sp6_S_contig84:777754..777846Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 777755..777846 -
1682350476.6095746-CDS-Ecto-sp6_S_contig84:777989..7780521682350476.6095746-CDS-Ecto-sp6_S_contig84:777989..778052Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 777990..778052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17621.1

>prot_Ecto-sp6_S_contig84.17621.1 ID=prot_Ecto-sp6_S_contig84.17621.1|Name=mRNA_Ecto-sp6_S_contig84.17621.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=371bp
MLASTLLECETLCLFSALRVNVLGEPCNEVVCGYWWKNYLSGEDGNAWFD
SWNKFMQAKLDLLASIAEEREDTETEPFRVLMIGDSTMSHQFGAICGFMG
EREGRRFDPEVTQRGAPGCCMDTLPKEDGGEGGGGRGLCFQYDQFRFLDP
KRPDRTSVDAYYFGSGLHLLHMYPHWPEMHPMEPLRVQSWLNYESLLEGV
VEGVRVKNGQDVKVAFMTNHAIADELFTGEYKEIRAAYREGEGNATIRAE
CQREDNVQVRAASVGNPADFSYSDWHGKPDIAEYITHPEGQGLFTVDTYC
EEAILDRRGSLQMSRRARPVMSRLGVPLVDAAKIVEGQGWASHVNDGRHF
HKLVPIERGGRGLVSVTNTL*
back to top

mRNA from alignment at Ecto-sp6_S_contig84:770590..778052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17621.1 ID=mRNA_Ecto-sp6_S_contig84.17621.1|Name=mRNA_Ecto-sp6_S_contig84.17621.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7463bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:770590..778052- (Ectocarpus species6 EcLAC_371)
ATGCTGGCCTCGACGCTTCTCGAGTGCGAGACGCTGTGCCTCTTCTCCGC GCTGCGCGTTAACGTGATCTAACAGCGTGTTAAGAGCACACGCACCGCTA GACCCTATCCACAGCAGTCAGCACCGTTTTATTTTATATCGGGGTCTCTG CACCACCCACCACCACCACCCCGCCTTGCTGCTGCTGCTGTTGTTGTTCG ACACAGGTGCTGGGCGAGCCTTGCAACGAGGTCGTGTGCGGCTACTGGTG GAAGAACTACCTCTCTGGCGAGGACGGTAACGCCTGGTTTGACTCTTGGT GAGAAAGCCACCCATTTGCTCGGAGGTTCTCGGCGTACACTGCATCTGTT GCTACCGTTTCTTCTGTCTTTGATCCGCAGAGTCTCCCCCATGCCGCCCC CCTCACGGGGTCCCAGTTTGTGGCATTTAGAAGTGCTGTTGCTTTTCACC CGCACTGAGACTGACGGCTTTTCATTGGTCAGCCGGTTAGCGCGGTCGAT GCTGATAATAATAACACACACCTTGTCTCTATCTCCACCACGTAGTACCT TGCCAACGCTGACTTCCACCCGCAAACCCGACCCCCCCCCCTCCCAAACA AAACAGGTAGCTCTACCCGCACTTCAGCACCTCTAGTTTTGGCCGCGTCT GTGTTTCGTTGTTCCTCTTGTGGGCTGCAAATTGCCGCCATGTAGATAGG TTTTAGTATGGGGGTTCTTGACAGGGCTCACGAACGCGCTCTTGTGTTTC GATGTACTGTCGAGCATCAAGTTCTTAAACTACCACGTTCTGTTTTTTAT GTGCGGGCGCTACGTGTCTGTGAAATCGCGGGCATCATCGGCAGGAACAA GTTCATGCAGGCCAAGCTAGACCTGCTGGCTTCCATCGCGGAGGAAAGGG AGGACACAGAGACGGAGCCCTTCCGCGTCCTGATGATCGGGGACAGCACG ATGAGCCACCAGTTTGGCGCCATCTGCGGCTTCATGGGCGAGAGAGAGGG ACGACGATTCGATCCCGAGGTGTGTGTGCGCGTGCGTGTGTTTTATTTTA TTTTATTTTTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGT CAGTCTCAGTGCGGTTGAAAACACAAAACACTTCTGAATGCCATCAACTG GGACCCGGTGAGGGGGCGGCGTGGGGGAGACTGATCTATCATCGGGATCA AGCCAGAAACGGTAGCAACAGAAGAAAACTGCACACGTCTACGAAGGCTG CTACCTCTCACCCGTGTGTGTGTGTGTGTGTGTGTGTTGTGTGTTTTGTT AGCATCGACCGCGTTGACCAATGAACAGACGTCAGTCTCGGTGCGGTTGA AAGCAGAATTGGGTTCTAGAGATCATGATCTTTGTGCGGGTAAGATGTGC GTTTGGTGTTGCTTGTTTGTTTTTGTCCCGTTGTTCGAGCGTCCTTCGGG ATGCAGGTGAAAGTCGTCGGCGTTACCTTTACTCCGTACACGGGGCGTTT TTTGTTTGGTTTTGGGGCGGTGACGGCTCAAGGAACACCGGAACCCTAAG TATTTCATCTGGTTGTTTTTAGAAAGCTCGGTAAAAGCACCCGCGGGGCT TTTGTTTCAGGCTCCAAGTATCCCTCTTTTCTGCCTTGTTTATTTCTCTT CTTGTTTCTCTGTCCTGTCTCTCTGTCTGTCTCTGTCTCTTCTCTGTACA TAGCGCGCCCGAGAGAGAGAGGTTACTCATTTTTGTCTGGAGGATTGAGG AGAGAGATTAACGTAGAAACCTACGCAAAGCCAACCCGCAATGACCTTGC TGATTGATGCCTCCCCCCCCCCCTCAGGTGACTCAACGCGGGGCCCCCGG TTGCTGCATGGACACGTTGCCCAAAGAAGACGGAGGAGAAGGAGGAGGAG GGCGGGGGCTCTGCTTCCAGTATGACCAGTTCCGCTTCCTTGACCCCAAG CGACCGGACAGGACGTCCGTGGACGCCTACTACTTCGGCAGCGGTCTCCA CCTGCTGCACATGTACCCCCACTGGCCGGAGATGCACCCCATGGAACCGC TGCGAGTGCAATCGTGAGACATTCGGGTTATACGGTTGGGGTAAGGGACA GACCCCTGTTTCGGATGGATGGGGAGGAACTTGAGCTGCACGTATCTGGG GGAGGGGGTGTTGTGCTCATAGTCGTGCATGCCGTAGTCGTTAGATCGTT GACCTCGCATCCCTACAAAGCCGGGACGGAGCACGCCGGGAGGGGCATGA TACCGTTCTGAGTCGGGTTATGACAGCCGGCGGGAGAGGAGAGGAGAGAA AGCCGTGTTTCTTGGTCTTGACGAGCTTTGCTTGCCGGGAAAAGGCTTCA GGGGTTGAAAGGGGGGGCACAGCAGGATGCCGCTTTGCTGCCTGCGACCG ATCGACCGAGATACATGTACAGCAGCGGCTCGGTTTGAGAAAGGGTTTGG ACACAACAGCCTCTCTTTTATCCGGGTTTCTCTTATTCACGTGCTACTGT GTAGATGTTGCGTTTCTTGTGTGTTTCTCATGGTCGGAACCAGCCGAATC CATGATCTTCAATCCGGTTTCCTTCCTCTGAAGTATTCTCTCCTCAAGGG CCGCCGCTAGTGCTGTGTGCGTGAGTTGGGGAAGGCGGGGAATGGGACCA TGACGCCGCCTGTGCGGAGAAACGGAAGGGCAGATCGGGCGTTCAACTCG CGTGTTTCCCGCCTTCATAGCGCACACGGGGGGGGGAGTTTTCACCCTTC CGTACAATGCCTGGACGTATCACTACTGTGTGATGTTTACTTCTCTTAAG TGTTCTGGGATTTTTGACCTTTGTGCAATGTTTTACGTAGCCTTCGGGAA GGGACGTAGGCAGGCAGACAGGGGTACCCTCGCCACTTTTCGCTCTCCCG TCCACGTATCCCCCCGTCCTCTTGGTAGATGGCCAGAAAAACAGCATCTC GGTGGTGCTCGAGGACAGGCAGGTCATCGATATTGTGCCTAAGAAAGTGG GTATCTTGACGGGCATGAAACCCTTCGTCTCAATAGTTTGCTTTGTCTGG GTTGCATGTCCGCTGACTCGTGTCCTTGCAGGTGGTTGAATTACGAGAGT CTTCTCGAGGGAGTCGTCGAGGGTGTTCGCGTGAAGAACGGACAGGATGT GAAGTGAGCATCATTCCGAGATTCCTCGTCGGAGGTCGCTTTCGTCCGTC CGGCTCAGGACTAGCACTACGACAAAAGTCGCGTTCGTCGAAAGAAGTGA AATTTCACCCCGATTGTTTTCGGCCTTCGCCAGATTCGCTTTCATGAAAA ACCACGCCATCGCCGACGACGTTTTTTTTGTGTTTTTGTTCTATCTCTTT TCGGCCATCAGTAGATTCGCTTTCATGGCGAACCACGCCATCGCTGACAG CTAGAATTTGTGTGTTTTGTTTTTATTTTCGATGTCTTTTTTCGGCCGTC ACCAAAATCGCTATCATCACGCCATCGCCGCCAACGTTACATTTTTTTTT TTTTCACATTTTTTTTTCGGCCATCACCAGAGTCGCTTTTATGACGAACC ACGCCATCGCCGACGAGCTATTTACGGGCGAGTACAAAGAGATTCGCGCC GCCTATCGGGAAGGAGAGGGGAACGCCACCATCCGGGCGGAGTGCCAAAG AGAGGTACACGACCGTGTGGAAGGGGGATCGTTTTTTTCAGCCATTATAG TGGTCCAGCAAACGTTCAACTGAGGACAGGCTGTTATTGCCAGCTACTAC TATCTTTTTTTCTCATTCTGTGGTAGAAAACTCTTGCTAATTTTATCGTT TTACTGTCTTACCTTCTTGTTATTCTGTGATAGAAAAATTCAGCTAGGAT ATTATCGTTTTTGTGCTTGCGTAGAGCCGGACTTGGCTTGACCGCTTCTC CCTTCTCTCCAACCTCTCCGGGGTCGATGTCGGGTTGCGGGGGTTGGTTG CCCCCGGAGATGCACCGCCAACCAAAACGAGTTCAGGCATCGAGCCTTGG TCCGATGAGAACCCGGCATGCTCCGTCGCGGCTTTGTAGGGATGCGAGGT CAATGGTCGAAGGACTACGGCTACGGCGTGCACGACTGTGAGTACCCCAT TTTTTTTTTTTTTTCGCGCAGGACAACGTCCAAGTCAGGGCCGCATCCGT CGGAAATCCTGCCGACTTTAGCTACTCCGATTGGCACGGAAAACCCGACA TCGCCGAGTACATTACCCACCCTGAGGGACAGGGGCTATTCACCGTGGAC ACTTACTGCGAGGAGGCCATCTTGGATCGACGGGGCTCCCTGCAGATGAG CAGGTAGGGTGACAACGACGGTGATTCAGCAGCGCAAGTCGCCTTTTAGG GTTTAGCTTCGACAGCGCTGACCGTTGGAAATAGCCAGCCTTCTCAGTGG GGGCAACGTGTGCACGTCATGTGCCTTCCAGCATCACGTCGAATGACATC CTAAGCCCTGTCCCAAACGAATGCCCTCCCTTTGTGCCTCTCCGGCTCGG TTTGCGGGTTTACCGTGGCCCCGGCAAGACTGGATGCCCCCGTTCCGTAC ATGTCCGGCTTTGTACGCAGGTTCAATGATACCAGGGTATTAAAATCGTA TTTTCTCTTCTTCGGTTTCTTTTTGTGCTTTATTGCCGCGATGGTGATGG TATTTCCTCTTTCGCGGTTGCGACTCAGCGCTTGGAAGAGTTTTTCCGTC CTATTCTCGAGCTAGCCCCGCACCTACCTCCAAGTCAGCAAGTAGCCCTT GCTGCGAAACCACCGTTCACTCCTGCTTGAAGACCCCCCTATCCTTCGAG TCAGCCCGCTTGGCATTGCACCCAACCCCGCACGACATCATGTGCGCCGA CAAAAATCAGGCGAGCCCGGCCGGTGATGTCTCGTCTTGGGGTGCCCCTC GTGGACGCGGCTAAGATAGTCGAGGGGCAGGGGTGGGCATCTCACGTCAA CGACGGGAGGCACTTCCACAAGCTGGTGCCGATAGAGGTGAGTGTGTATT CATGCGTGTCACCCCCTGTAGGATTGATACTGTGTTCCCCCCGACCGTGT CAGTTTCGCCTGTTTTTGTAATTGTACAGTAAAAATCGTGTTGATTGTTT TTGCCTGCGTGGAAGGGGGGGTGTAGTTCCATCGGACGTCGCGAGAAGAG GCGACATACACATTCGTTACGGTTCGGGATACAAGTCAAGTCAACCTCTT TTCTTCCTCCTGTGTCGGACTGAAGCTGCGCAGGTCGCCTCGAATGCAAC GCGTATTGAGCAGGATTCCTTAGGGTCCGACTTTGTTGACTAAGTTCACA ACGACGATATATGCACCGGTGCTATTATAGTAGCGTATTCCTCAGGGAAC TTTTGCCGACCGGTGTCGCCCTGCGCCAGACAGGCTGTCCGCCATGCCCG CAGCTAGCTCGCGACGAGATACCACCGGCTACCTCCGGCACCGACTTGCT CGGCTCAAATTACCTTACAGCGACCGCTGTTTCGAAAGTTGCGGCGCTGA AACCGTCTAGTGGAGTTCTCCCCCCCGAAAACGTACGGTTTGAGCAGATT TTCAAAGCTTTCGAGAAACAGAAAGCGGCGGAGCTGAAACCGTCTCATGT AGTCGAGGTATTTTCCTAAAACGTGCACACGGTATTGGGCGGAGTCTTCA ATGCTTAGAGCAACAACAACAGCACCAAAGACCACCGCCTTCGATGCTGC AGGTGGCCAGCCTCTTGAGCGTTCTCGGAGCGCCACATCCGCCGGGCAGT CTCCCTGATAGAGATGCAGCAGCGCTGGCGGAAGAGGCGACAGGGGAGGG ACAACCAACTCTATCGGTTGAGCTGGATGGCGAAGAAAGCGATTCTCGTC AACCCTGAACAGGCGGGTCGGGGGGGGGGGATAAATCGATTCGCGGAACC CCCAATGAGGTCGAAAAAGACCATGACTTGATTTTTGTGGGTCGAAATGG AGTTTTTTGACGATCACGTCGGATAACACCCCCCCCCCCTCCCGTTGTAG ACTGCACACCTGACGCATTTTTGGTTCAAACGTGGGGGCGGGTCAACCTG TGGGGGCGGCGATTGATGGTAGGAATTGATTAACCTATTATTTAGAGGGT GGTATTATAGGAGAATCACTTGTAACAGTACTGCGTGCGTCACGCTCTGC CTTGGGCGCGGTTTTGCAGGGGGCTTGCTTTTCACGCTCTGCTGTCTGCT GTGCCGCTATTGAGGAGAGCGGGGTTTACGCGGGCGGGAGTCCCAATGAT ATTCCTGCTTTCTTTTTGTTTGTACCAAAGCACGGTTTCCCTCGTAAGCT GAAAATTGACATTTTTCTCGTGCCAGTGTAATTGGTAGAGCTCTCAGTGT AGTAGTCGCTGCCCGACACGTACGTACGTGTTGCACAAAGGGCAAGTATT CCTTCTTGGTGTGTGTATGTCAGGCCGAGAATAACCTTCGGCGCCCGCGA GGCAGGCTCTTCGTCCGGTCAACAAGCAAAGCGCTTCAGATTGGGCAATA GGTCGAGGCTCGGAACTATCCTCTCCCCAAATTGTCCTAAAGTATGTCCT CGTTCGCTGCTGTTGTACAGCTGCAGCAGCAGCAGCAGCAGCAGTATGAT TAGGAGTAGTATTGTCACATAGTTGTGTTTTTCTAGGCTTTTCTCTCGTC TCTTTTCTCTTGTGCCGGGGAGGCGTGTTTGGTCCACAGCCTATTCGGCA GACAGGCTTCGTGTTTGTGTTGGCTCGTCCCGTGCAGAAGATGTGTTTTC CTGCGCCAGTATTATTATTATTAAGGAGGAATCCCCGTAGAATATTCACA CAGCGCTTCACACCCGAAGGAAGATTCCCCAAGTCCATGCATCATCTGTT TCCGCAGGACGCGGAGGGTTATCGCCGAAGAAGGTGGTTTCGAGGTGATG GTATCGTACAATAGGGCTTCTGAAAGCCGTATCATGTAGGTTGTCTATGC TTGTACACTTTGTCGTTGGGAAAGAAATGGAGATCCAAGTCCCAGGGAGC TCGGAGAGCGGCGGCCATTCAGGTGTCGCCCACGGCGGCGGGGCTATAAC CATTGTGGTTTTGATTGGCTGCCGCGTTAGTCAAGAGTTTTTTTTTTTGC CGACGTCAAGAGATTTCTTCTTTTGATCTGTCTTGAGCAGGGGTTTCTAC CCGCTTGGAGTGTGTTCGCGGCTCAAGAACATGGAGTTCACCACCTTGTT GGCATTGGTACGGAGTGACCTGCCTTGTGTTGCTTCTCCTCCGAGGCCCG CCAGGTGCTACAATTTGCCTACCTGTAGGGGCCACGTTTGTTGCCAAACC GCCGTCCATCACGGCATGAAATCTCCCCCGCGTTCGGGGAGGGGGGGGTA CTCCTATGTTTTGCATGCCTTAGCGGTTAGACCATTGGCCACGCGTCTTC GAGAGGACGGAGAATTCGGAGAGGGGGGGGAGGGGATTGGTGTCTGTGAC AAATACGTTATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:770590..778052-

>mRNA_Ecto-sp6_S_contig84.17621.1 ID=mRNA_Ecto-sp6_S_contig84.17621.1|Name=mRNA_Ecto-sp6_S_contig84.17621.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1113bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:770590..778052- (Ectocarpus species6 EcLAC_371)
ATGCTGGCCTCGACGCTTCTCGAGTGCGAGACGCTGTGCCTCTTCTCCGC
GCTGCGCGTTAACGTGCTGGGCGAGCCTTGCAACGAGGTCGTGTGCGGCT
ACTGGTGGAAGAACTACCTCTCTGGCGAGGACGGTAACGCCTGGTTTGAC
TCTTGGAACAAGTTCATGCAGGCCAAGCTAGACCTGCTGGCTTCCATCGC
GGAGGAAAGGGAGGACACAGAGACGGAGCCCTTCCGCGTCCTGATGATCG
GGGACAGCACGATGAGCCACCAGTTTGGCGCCATCTGCGGCTTCATGGGC
GAGAGAGAGGGACGACGATTCGATCCCGAGGTGACTCAACGCGGGGCCCC
CGGTTGCTGCATGGACACGTTGCCCAAAGAAGACGGAGGAGAAGGAGGAG
GAGGGCGGGGGCTCTGCTTCCAGTATGACCAGTTCCGCTTCCTTGACCCC
AAGCGACCGGACAGGACGTCCGTGGACGCCTACTACTTCGGCAGCGGTCT
CCACCTGCTGCACATGTACCCCCACTGGCCGGAGATGCACCCCATGGAAC
CGCTGCGAGTGCAATCGTGGTTGAATTACGAGAGTCTTCTCGAGGGAGTC
GTCGAGGGTGTTCGCGTGAAGAACGGACAGGATGTGAAAGTCGCTTTTAT
GACGAACCACGCCATCGCCGACGAGCTATTTACGGGCGAGTACAAAGAGA
TTCGCGCCGCCTATCGGGAAGGAGAGGGGAACGCCACCATCCGGGCGGAG
TGCCAAAGAGAGGACAACGTCCAAGTCAGGGCCGCATCCGTCGGAAATCC
TGCCGACTTTAGCTACTCCGATTGGCACGGAAAACCCGACATCGCCGAGT
ACATTACCCACCCTGAGGGACAGGGGCTATTCACCGTGGACACTTACTGC
GAGGAGGCCATCTTGGATCGACGGGGCTCCCTGCAGATGAGCAGGCGAGC
CCGGCCGGTGATGTCTCGTCTTGGGGTGCCCCTCGTGGACGCGGCTAAGA
TAGTCGAGGGGCAGGGGTGGGCATCTCACGTCAACGACGGGAGGCACTTC
CACAAGCTGGTGCCGATAGAGAGGGGGGGGAGGGGATTGGTGTCTGTGAC
AAATACGTTATAA
back to top