mRNA_Ecto-sp6_S_contig84.17614.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17614.1
Unique NamemRNA_Ecto-sp6_S_contig84.17614.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A815AGB7_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815AGB7_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 3.570e-9
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTL 129
            D+K+  ++  GIS DQQRLI AGKQLEDG TL HY I NG TL
Sbjct:   26 DLKKMIQKKKGISADQQRLIFAGKQLEDGATLTHYGIHNGATL 68          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A819S7K6_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A819S7K6_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 2.150e-8
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTL 129
            D+K+  ++  GIS DQQRLI AGKQLEDG TL HY I NG TL
Sbjct:   93 DLKKMIQKKKGISADQQRLIFAGKQLEDGATLTHYGIHNGATL 135          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A819GDS8_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A819GDS8_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 2.460e-8
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLGFAS 141
            D+K+  ++  GIS DQQR+I AGKQLEDG TL HY I NG TL   S
Sbjct:  279 DLKKMIQKKKGISADQQRIIFAGKQLEDGATLSHYGIHNGATLHLVS 325          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A5J4XAC1_9EUKA (Putative polyubiquitin n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4XAC1_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 7.430e-8
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 1
Query:    4 IKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLGFASMWGKAGDPP-----VPASPRGCHGHAGAEPALELLR 234
            +K+K +   GI  DQQRLI AGKQLEDG TL+ YNIQ   TL         GDPP        + R  + H   +P  ++L+
Sbjct:  102 VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLQDYNIQKEATLHLVLRLRGGGDPPKKIKYTDNNDRDDNEHDSRQPVFDILK 183          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A818ZYI3_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A818ZYI3_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 1.390e-7
Identity = 26/33 (78.79%), Postives = 26/33 (78.79%), Query Frame = 1
Query:   31 GISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTL 129
            GIS DQQRLI AGKQLEDG TL HY I NG TL
Sbjct:    7 GISADQQRLIFAGKQLEDGATLTHYGIHNGATL 39          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A7G9RU05_9BURK (IPTL-CTERM sorting domain-containing protein n=1 Tax=Diaphorobacter ruginosibacter TaxID=1715720 RepID=A0A7G9RU05_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 1.610e-7
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1
Query:    4 IKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTL 129
            +K+K E   GI VDQQRLI AGKQLEDG TL  YNIQ   TL
Sbjct:   26 VKQKIEDKEGIPVDQQRLIFAGKQLEDGRTLADYNIQKESTL 67          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A814V326_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A814V326_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 1.650e-7
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    1 DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLGFAS 141
            D+K+  ++   IS DQQR+I AGKQLEDG TL HY I NG TL   S
Sbjct:  279 DLKKMIQKKKDISADQQRIIFAGKQLEDGATLSHYGIHNGVTLHLVS 325          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A2I3H1Q9_NOMLE (Ubiquitin-like domain-containing protein n=1 Tax=Nomascus leucogenys TaxID=61853 RepID=A0A2I3H1Q9_NOMLE)

HSP 1 Score: 53.5 bits (127), Expect = 2.200e-7
Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLGFA 138
            ++K K +   GI  DQQRLI AGKQLEDG TL  YNIQ G  +G A
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKGTRVGVA 70          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A6G3MKB3_HENSL (Polyubiquitin-B (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MKB3_HENSL)

HSP 1 Score: 55.5 bits (132), Expect = 2.430e-7
Identity = 28/43 (65.12%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTL 129
            DIK K ++  GI  DQQRLI AGKQLEDG TL  YNIQ   TL
Sbjct:  101 DIKSKIQQKEGIPTDQQRLIFAGKQLEDGRTLNDYNIQKESTL 143          
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Match: A0A481YWQ3_9VIRU (Ubiquitin n=1 Tax=Marseillevirus LCMAC201 TaxID=2506605 RepID=A0A481YWQ3_9VIRU)

HSP 1 Score: 53.5 bits (127), Expect = 2.530e-7
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTL 129
            ++K+K + A GI  DQQRLI AGKQLEDG TL  YNIQ   TL
Sbjct:   31 NVKQKIQDAEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 73          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A815AGB7_9BILA3.570e-965.12Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A819S7K6_9BILA2.150e-865.12Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A819GDS8_9BILA2.460e-859.57Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A5J4XAC1_9EUKA7.430e-841.46Putative polyubiquitin n=1 Tax=Streblomastix strix... [more]
A0A818ZYI3_9BILA1.390e-778.79Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A7G9RU05_9BURK1.610e-766.67IPTL-CTERM sorting domain-containing protein n=1 T... [more]
A0A814V326_9BILA1.650e-757.45Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A2I3H1Q9_NOMLE2.200e-758.70Ubiquitin-like domain-containing protein n=1 Tax=N... [more]
A0A6G3MKB3_HENSL2.430e-765.12Polyubiquitin-B (Trinotate prediction) (Fragment) ... [more]
A0A481YWQ3_9VIRU2.530e-762.79Ubiquitin n=1 Tax=Marseillevirus LCMAC201 TaxID=25... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:705519..705808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size292
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-06_008610.2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350475.9254825-CDS-Ecto-sp6_S_contig84:705518..7058061682350475.9254825-CDS-Ecto-sp6_S_contig84:705518..705806Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 705519..705806 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17614.1prot_Ecto-sp6_S_contig84.17614.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 705519..705806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17614.1

>prot_Ecto-sp6_S_contig84.17614.1 ID=prot_Ecto-sp6_S_contig84.17614.1|Name=mRNA_Ecto-sp6_S_contig84.17614.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=96bp
DIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLGFASMWG
KAGDPPVPASPRGCHGHAGAEPALELLRTFPKPPSSNLQQAAPDPK
back to top

mRNA from alignment at Ecto-sp6_S_contig84:705519..705808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17614.1 ID=mRNA_Ecto-sp6_S_contig84.17614.1|Name=mRNA_Ecto-sp6_S_contig84.17614.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=290bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:705519..705808+ (Ectocarpus species6 EcLAC_371)
GACATCAAGGAGAAGAGTGAACGCGCGGGAGGCATTTCCGTCGACCAGCA GCGCCTCATCCACGCAGGCAAGCAATTAGAAGATGGCCTGACCTTGCGTC ATTACAACATTCAGAACGGTTACACCCTAGGTTTTGCGTCTATGTGGGGG AAAGCCGGTGATCCTCCTGTACCCGCCAGCCCGCGTGGATGCCACGGTCA CGCTGGAGCTGAGCCCGCCCTGGAGCTTCTGCGCACATTCCCGAAGCCCC CGTCTAGCAACCTGCAGCAGGCAGCCCCGGACCCCAAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:705519..705808+

>mRNA_Ecto-sp6_S_contig84.17614.1 ID=mRNA_Ecto-sp6_S_contig84.17614.1|Name=mRNA_Ecto-sp6_S_contig84.17614.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:705519..705808+ (Ectocarpus species6 EcLAC_371)
GACATCAAGGAGAAGAGTGAACGCGCGGGAGGCATTTCCGTCGACCAGCA
GCGCCTCATCCACGCAGGCAAGCAATTAGAAGATGGCCTGACCTTGCGTC
ATTACAACATTCAGAACGGTTACACCCTAGGTTTTGCGTCTATGTGGGGG
AAAGCCGGTGATCCTCCTGTACCCGCCAGCCCGCGTGGATGCCACGGTCA
CGCTGGAGCTGAGCCCGCCCTGGAGCTTCTGCGCACATTCCCGAAGCCCC
CGTCTAGCAACCTGCAGCAGGCAGCCCCGGACCCCAAG
back to top