mRNA_Ecto-sp6_S_contig84.17613.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17613.1
Unique NamemRNA_Ecto-sp6_S_contig84.17613.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:704372..705055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size407
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350468.4214368-CDS-Ecto-sp6_S_contig84:704371..7046991682350468.4214368-CDS-Ecto-sp6_S_contig84:704371..704699Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 704372..704699 +
1682350468.4334106-CDS-Ecto-sp6_S_contig84:704978..7050551682350468.4334106-CDS-Ecto-sp6_S_contig84:704978..705055Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 704979..705055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17613.1prot_Ecto-sp6_S_contig84.17613.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 704372..705055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17613.1

>prot_Ecto-sp6_S_contig84.17613.1 ID=prot_Ecto-sp6_S_contig84.17613.1|Name=mRNA_Ecto-sp6_S_contig84.17613.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=135bp
MPGCRWRCRGGAGSSSISDRDRSNKHRRSRDSAEEAVAGAAARGGETVGR
NERQKSKRPRNGVRVAIKNEGGAAAIATTGSHGTGAGAVAPAASRAGDVM
DVSEDSRGGASPRSTGRVGVPVASKPVKRGGAKTS
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mRNA from alignment at Ecto-sp6_S_contig84:704372..705055+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17613.1 ID=mRNA_Ecto-sp6_S_contig84.17613.1|Name=mRNA_Ecto-sp6_S_contig84.17613.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=684bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:704372..705055+ (Ectocarpus species6 EcLAC_371)
ATGCCTGGCTGCCGTTGGCGTTGTCGAGGTGGAGCTGGCTCAAGCAGTAT
CAGCGACCGCGATCGCAGCAACAAGCACCGACGATCGCGAGATTCCGCTG
AAGAGGCAGTCGCTGGGGCAGCAGCAAGAGGAGGAGAAACCGTCGGCCGG
AACGAACGGCAGAAGAGCAAGAGGCCCAGGAATGGTGTTAGGGTTGCAAT
CAAGAACGAAGGTGGCGCCGCTGCCATCGCAACCACCGGTAGTCATGGCA
CTGGCGCTGGCGCTGTTGCTCCTGCTGCCTCTCGCGCTGGAGATGTGATG
GACGTCTCTGAGGACTCACGGGGTGGTGGTGAGCAGGATGACTGCGGTGT
GGGAACGTTAGGGGCGCCGTTGTTGAGGGGGAAACAGGGCCACACGGAGC
ACTGTTCGCCTCCACTGCAGTTTGGAACATGCTCTTCTCCGACCCGGACG
AGCAAACCACCTCCTGCGTACAAGTAGAAGTTTGACGCGCCGGCACGAAG
TACACTCTCTGTACGAGTGGGAGGATGAATGTCATTTTCTGTTCATATGG
TGCACGCGCCCCAGCTCGCAACTACTGACGTGTTGTTGCGTGTGCCGTCT
TTGCTAGCGTCGCCGAGGTCTACCGGGCGGGTGGGCGTCCCCGTGGCTTC
CAAGCCAGTGAAGCGTGGAGGGGCGAAGACTTCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:704372..705055+

>mRNA_Ecto-sp6_S_contig84.17613.1 ID=mRNA_Ecto-sp6_S_contig84.17613.1|Name=mRNA_Ecto-sp6_S_contig84.17613.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:704372..705055+ (Ectocarpus species6 EcLAC_371)
ATGCCTGGCTGCCGTTGGCGTTGTCGAGGTGGAGCTGGCTCAAGCAGTAT
CAGCGACCGCGATCGCAGCAACAAGCACCGACGATCGCGAGATTCCGCTG
AAGAGGCAGTCGCTGGGGCAGCAGCAAGAGGAGGAGAAACCGTCGGCCGG
AACGAACGGCAGAAGAGCAAGAGGCCCAGGAATGGTGTTAGGGTTGCAAT
CAAGAACGAAGGTGGCGCCGCTGCCATCGCAACCACCGGTAGTCATGGCA
CTGGCGCTGGCGCTGTTGCTCCTGCTGCCTCTCGCGCTGGAGATGTGATG
GACGTCTCTGAGGACTCACGGGGTGGTGCGTCGCCGAGGTCTACCGGGCG
GGTGGGCGTCCCCGTGGCTTCCAAGCCAGTGAAGCGTGGAGGGGCGAAGA
CTTCA
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