mRNA_Ecto-sp6_S_contig84.17611.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17611.1
Unique NamemRNA_Ecto-sp6_S_contig84.17611.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 6.610e-115
Identity = 180/294 (61.22%), Postives = 215/294 (73.13%), Query Frame = 1
Query:   85 VRDQTGEETYFRVRSTVAMSKIKHTYCSRKGVSTGAMEFLLDGDRVEDDETPASLEIEDDDQIDARLNQRGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQAST-----SEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNLNGSSHD 951
            ++  TG++   R   +  +  +K      +G+       +  G +  DD T     I +       L+ R  KPVILLYP  P+D TV +ELSPLW FS+LYPK     L+Q +      S+A + GGQQCKWNVHASP GSL+DLSTGR+YPYLFWEADS DGRV+RSFGL+ +RSFCVAG+AAGVFLD +LERLGLN+RERCDMVT WLPQLESS FNVI FV+V+RYE+ ARLTI P PDVTIR+FMAFRG  AYDAELDTAKIE+LR+PAR+GFVAVEWGGMNLNG SHD
Sbjct:  162 IKTLTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVSHD 453          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.900e-50
Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 1
Query:  667 MRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNLNGSSHD 951
            MRERCDMVTYWLPQLESS FNVI FV+V+RYEK ARLTI PAPDVTIRIFMAFRGIDAYD ELDTAK+EDLRAP RKGFVAVEWGGMNLN  SHD
Sbjct:    1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLNRVSHD 95          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: D7FN69_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN69_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 3.430e-41
Identity = 69/100 (69.00%), Postives = 83/100 (83.00%), Query Frame = 1
Query:  415 QQASTSEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLE 714
            +Q S  EAI+  GQ C+W VHA+PDGSL D+ST R+YPYLFWEADS DG V  +FGL +T SFCVAG+ AG+FLD +LERLGLN+RERCD++TYWLPQLE
Sbjct:   59 RQTSGYEAIVASGQHCEWIVHANPDGSLTDISTSREYPYLFWEADSTDGLVCGNFGLEKTPSFCVAGNDAGLFLDVALERLGLNVRERCDVITYWLPQLE 158          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: A0A1Y4WJV0_9FIRM (Uncharacterized protein n=1 Tax=Flavonifractor sp. An10 TaxID=1965537 RepID=A0A1Y4WJV0_9FIRM)

HSP 1 Score: 150 bits (380), Expect = 2.760e-39
Identity = 89/219 (40.64%), Postives = 119/219 (54.34%), Query Frame = 1
Query:  277 ARLNQRGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNL 933
            A    +G KPVI LYP    + TVTLEL     F++ YP             E          W V A+PDG+L D ++GR Y  LFWE     G + R F L+    FCVAG+    FL+ +L RLGL  RE  + + YWLP++E +P+N+I+F     Y   A LTI P+PD  IR+FM ++G++    E+     ++L APAR GF AVEWGG  L
Sbjct:   18 AGCGSKGAKPVIYLYPEEETEVTVTLELD--GTFTSTYP----------DYGEG---------WTVTAAPDGTLTDPNSGRTYYCLFWE-----GIIDRQFDLSA--GFCVAGEDTAAFLEDALARLGLTEREANEFIIYWLPRMEGNPYNLISF-QTDAYTDAAELTIDPSPDTLIRVFMTWKGLEQ-PVEIPA---QELTAPARTGFTAVEWGGAEL 203          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: A0A8H7DML9_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7DML9_9AGAR)

HSP 1 Score: 147 bits (372), Expect = 6.410e-36
Identity = 102/316 (32.28%), Postives = 150/316 (47.47%), Query Frame = 1
Query:   91 DQTGEETYFRVRSTVAMSKIKHTYCSRKGVSTGAMEFLLDGDRVEDDETPASLEIEDDDQIDARLNQRGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTG-GQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDG--------RVSRSFGLNET-----------RSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGID---------AYDAELDTAKIEDL------RAPARKGFVAVEWGGMNL 933
            DQ+      ++++T    K  H   ++  +     + + DG R+  D+TPA +++ED D ID  L QRGGKPVI +Y     D +V L L+  W  SA+YP           +++A+ +G G++ +WNV    +GSL +L+TG    YLFWEA +  G         V+ SF   ++            S  +A      +LD  L  L L+   R   +TYWLP L       + FV  + YE  A L I P P+V  RIFM F+GID         A  A  DT + +++      RA     F  +EWGGM +
Sbjct:  111 DQSSRALVMKMKATTPFRKASHLISTQLVLDD--FDMVYDGCRLRLDQTPADVDMEDQDSIDIILKQRGGKPVIYVYSPTETDVSVALTLTREWSLSAIYP---------VVSTKALPSGTGERIQWNVRTRSNGSLTELNTGLDVAYLFWEAHTNHGIPASPPTSPVAGSFPTTQSFSPLTSDLFPVDSVLIAVRDITPYLDKVLAGLALHTEARTSFITYWLPSLLKHKHVALRFVPQEAYEIAAPLDIQPVPEVVTRIFMLFKGIDDDALTEWENAKAAADDTERWKEVVGGDFERADDASLFRVLEWGGMEV 415          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: A0A8J6M4N2_9FIRM (Uncharacterized protein n=2 Tax=Eubacteriales TaxID=186802 RepID=A0A8J6M4N2_9FIRM)

HSP 1 Score: 140 bits (354), Expect = 2.040e-35
Identity = 85/216 (39.35%), Postives = 115/216 (53.24%), Query Frame = 1
Query:  289 QRGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNLN 936
            Q   KPVI LYP    +  VTL+     R +  YPK                TGG    W+V A PDG+L D   G+ Y YL+WE +    R    F    +R FCVAG  +  FL+ +L RLGL  RE  + + +WLPQLE +P+N+I F     Y   ARLT+ P PD  +R+FMA++ +DA   E++    + L AP R+GF  VEWGG  ++
Sbjct:   34 QTSAKPVIYLYPREETNVDVTLDYD--GRLTCTYPK---------------YTGG----WSVTARPDGTLTD-GAGQSYNYLYWEGED---RNEYDF----SRGFCVAGADSAAFLEDALARLGLTRREANEFIVFWLPQLEENPYNLIAF-QTDAYTDHARLTVTPEPDTVLRVFMAWKPLDA-PVEIEA---QPLTAPTREGFTLVEWGGSRVD 215          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: A0A096CD36_FLAPL (Uncharacterized protein n=14 Tax=Eubacteriales TaxID=186802 RepID=A0A096CD36_FLAPL)

HSP 1 Score: 140 bits (352), Expect = 3.530e-35
Identity = 82/211 (38.86%), Postives = 114/211 (54.03%), Query Frame = 1
Query:  301 KPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNL 933
            KPV+ LYP    + TVTL+       ++ YP                        W V A PDG+L D +TGR+Y  LFWE     G     +  +    FCVAG+    FL+ +L+RLGL  RE  + + YWLP+LE +P+N+++F   + Y   A LTI PAPD  IR+F+A++G+DA   E++    + L APAR GF AVEWGG  +
Sbjct:   32 KPVLYLYPEEETEVTVTLDFD--GTLTSTYPDYGDG-------------------WTVTARPDGTLTDPATGREYYCLFWE-----GITEAEYDFST--GFCVAGEDTAAFLEDALDRLGLTGREADEFIIYWLPKLEGNPYNLLSF-QTEAYTSSAVLTIDPAPDTLIRVFLAWKGLDA-PVEIEP---QTLTAPARTGFTAVEWGGAEV 209          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: A8NLI4_COPC7 (Ubiquitin-like domain-containing protein n=1 Tax=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) TaxID=240176 RepID=A8NLI4_COPC7)

HSP 1 Score: 145 bits (365), Expect = 7.700e-35
Identity = 99/324 (30.56%), Postives = 144/324 (44.44%), Query Frame = 1
Query:   91 DQTGEETYFRVRSTVAMSKIKHTYCSRKGVSTGAMEFLLDGDRVE-DDETPASLEIEDDDQIDARLNQRGGKPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSC-------------------DGRVSRSFGLNETR-----SFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAK-----------------IEDLRAPARKGFVAVEWGGMNLN 936
            + TG+    +V+    +  +        G++  A   L  G RV+    T A   I+  D I      RGGKPVI L+  V  + +V L L P W FSA+YP  P           A    GQ+ +W V  S DGSL++ +TG +  YLFWEA++                    DG +   F  N+       S  V       +LDG+L+ LGL+   R   +TYWLP +    +  + F+    YE+ A L I PAPDV +RIFM F+G+D  + E D  +                 ++  +A   + F  VEWGGM ++
Sbjct:  115 EPTGQRVTVKVKPDSKIGILHDAIEKVLGIARDAQRLLYGGRRVDITSGTFADYGIKSGDTIIVYNVLRGGKPVIYLFSPVEREVSVKLSLVPQWEFSAIYPVVP--------VKTASAGSGQEIEWTVTTSADGSLKERTTGLEVAYLFWEAETTRVAPLSPPPTPTIAATDPGDGPLQEVFVPNDAHLCSENSVVVETSKVTPYLDGALKALGLHTEARTSFITYWLPAILKHEYVALRFLPQSAYERAAPLDITPAPDVVLRIFMLFKGVDQGELEEDWKQAAYRATEPVGRWVQVVGVDVPKATDPQSFRVVEWGGMEIH 430          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: A0A096B0K5_FLAPL (Uncharacterized protein n=19 Tax=Eubacteriales TaxID=186802 RepID=A0A096B0K5_FLAPL)

HSP 1 Score: 138 bits (348), Expect = 1.280e-34
Identity = 82/212 (38.68%), Postives = 116/212 (54.72%), Query Frame = 1
Query:  301 KPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNLN 936
            KPV+ LYP   ++ TVTL+       ++ YP              A   G     W V A PDG+L + +TGR+Y  LFWE     G     +  +    FCVAG+    FL+ +L+RLGL  RE  + + YWLP+LE +P+N+++F     Y   A LTI PAPD  IR+F+A++G+DA   E++    + L AP R GF AVEWGG  ++
Sbjct:   32 KPVLYLYPEEEMEVTVTLDFD--GTLTSTYP--------------AYGDG-----WTVTARPDGTLTNPATGREYYCLFWE-----GITEAEYDFSA--GFCVAGEDTAAFLEDALDRLGLTEREADEFIIYWLPKLEGNPYNLLSF-QTDAYTDSAALTIDPAPDTLIRVFLAWKGLDA-PVEVEP---QTLTAPERTGFTAVEWGGAEVD 210          
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Match: A0A7X5D8X7_9CLOT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7X5D8X7_9CLOT)

HSP 1 Score: 137 bits (345), Expect = 2.070e-34
Identity = 84/212 (39.62%), Postives = 111/212 (52.36%), Query Frame = 1
Query:  301 KPVILLYPSVPLDTTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTGGQQCKWNVHASPDGSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLDGSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAPAPDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNLN 936
            KPVI LYP  P    V LEL         YP    +  ++ S SE          W V A PDG+L DL  GR+Y YLFWE     G     F     R FC+AG     FL+ +L +LGL  +E  D +TYWLPQ++ +P+N+I F     Y++ ARLT+ P PD  IR+FMA+  +D    E    + + L A  R+GF  VEWGG  ++
Sbjct:    5 KPVIYLYPKEPCVVEVALELE--GTVGMAYP----AFNEERSASEG--------SWKVQADPDGTLSDLRVGREYGYLFWEGV---GDWEPDFD----RGFCIAGADTAEFLEDALRQLGLTDKEADDFITYWLPQMQGNPYNLIAFQG-GAYDRTARLTVDPQPDTIIRVFMAWMRLD----EPVVVEPQVLSAAPREGFAVVEWGGGEVS 190          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI6.610e-11561.22Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FJP3_ECTSI2.900e-5088.42Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
D7FN69_ECTSI3.430e-4169.00Ubiquitin family protein n=1 Tax=Ectocarpus silicu... [more]
A0A1Y4WJV0_9FIRM2.760e-3940.64Uncharacterized protein n=1 Tax=Flavonifractor sp.... [more]
A0A8H7DML9_9AGAR6.410e-3632.28Ubiquitin-like domain-containing protein n=1 Tax=M... [more]
A0A8J6M4N2_9FIRM2.040e-3539.35Uncharacterized protein n=2 Tax=Eubacteriales TaxI... [more]
A0A096CD36_FLAPL3.530e-3538.86Uncharacterized protein n=14 Tax=Eubacteriales Tax... [more]
A8NLI4_COPC77.700e-3530.56Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A096B0K5_FLAPL1.280e-3438.68Uncharacterized protein n=19 Tax=Eubacteriales Tax... [more]
A0A7X5D8X7_9CLOT2.070e-3439.62Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:668068..672227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score354.4
Seed ortholog evalue5.4e-95
Seed eggNOG ortholog2880.D7G4B4
Model size1476
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
Cds size915
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17611.1prot_Ecto-sp6_S_contig84.17611.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 668590..672188 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350475.810089-UTR-Ecto-sp6_S_contig84:668067..6685891682350475.810089-UTR-Ecto-sp6_S_contig84:668067..668589Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 668068..668589 -
1682350475.8721023-UTR-Ecto-sp6_S_contig84:672188..6722271682350475.8721023-UTR-Ecto-sp6_S_contig84:672188..672227Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 672189..672227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350475.822827-CDS-Ecto-sp6_S_contig84:668589..6687161682350475.822827-CDS-Ecto-sp6_S_contig84:668589..668716Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 668590..668716 -
1682350475.83279-CDS-Ecto-sp6_S_contig84:670432..6706341682350475.83279-CDS-Ecto-sp6_S_contig84:670432..670634Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 670433..670634 -
1682350475.842121-CDS-Ecto-sp6_S_contig84:670831..6710211682350475.842121-CDS-Ecto-sp6_S_contig84:670831..671021Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 670832..671021 -
1682350475.8515253-CDS-Ecto-sp6_S_contig84:671528..6718971682350475.8515253-CDS-Ecto-sp6_S_contig84:671528..671897Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 671529..671897 -
1682350475.8633907-CDS-Ecto-sp6_S_contig84:672161..6721881682350475.8633907-CDS-Ecto-sp6_S_contig84:672161..672188Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 672162..672188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17611.1

>prot_Ecto-sp6_S_contig84.17611.1 ID=prot_Ecto-sp6_S_contig84.17611.1|Name=mRNA_Ecto-sp6_S_contig84.17611.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=305bp
MMAKKEEPARVLRIIVRDQTGEETYFRVRSTVAMSKIKHTYCSRKGVSTG
AMEFLLDGDRVEDDETPASLEIEDDDQIDARLNQRGGKPVILLYPSVPLD
TTVTLELSPLWRFSALYPKPPSSKLQQASTSEAILTGGQQCKWNVHASPD
GSLEDLSTGRKYPYLFWEADSCDGRVSRSFGLNETRSFCVAGDAAGVFLD
GSLERLGLNMRERCDMVTYWLPQLESSPFNVINFVDVKRYEKVARLTIAP
APDVTIRIFMAFRGIDAYDAELDTAKIEDLRAPARKGFVAVEWGGMNLNG
SSHD*
back to top

mRNA from alignment at Ecto-sp6_S_contig84:668068..672227-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17611.1 ID=mRNA_Ecto-sp6_S_contig84.17611.1|Name=mRNA_Ecto-sp6_S_contig84.17611.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4160bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:668068..672227- (Ectocarpus species6 EcLAC_371)
GATGGGCGGAGCGCGGTGGATACGCAACAGCAGGATGCGATGATGGCAAA GAAGGAGGAGCCGGCGGTGAGCAAGAGCACGGGTGATGGGACCATCAAGC GGGCAACTGAATGCCGATAATGAAAGCACAAATCTGCGAAGATTCTTCGA TGTGTTCTGTTGTCGAATCTGAGACTCTCTTGGCGAAAATTGAAAAGCGA TTAGAGAACAAATATGTAGAATAGAAAGTAGGACAACTGGACTGCTAAAC ACCGGTACGAACTCTGAGTACCGAAAACCTTCGCCGTGCTCCCCTTCTCC CTTCCCGCGTTATTTGCGCCGTTTCGGAAGCGTGTACTTAGGATTATAGT CCGAGACCAAACTGGCGAGGAAACGTACTTCAGAGTGCGCTCCACCGTTG CTATGAGCAAGATCAAACACACGTATTGCAGCAGGAAGGGAGTCTCGACT GGAGCAATGGAGTTCCTTCTAGATGGAGACCGAGTAGAGGACGACGAGAC TCCGGCTAGTCTCGAAATTGAAGACGATGACCAAATCGACGCCCGGCTGA ACCAGAGGGGGGGAAAGCCCGTGATCCTCCTGTACCCGTCAGTCCCCCTG GATACCACTGTCACGCTGGAGCTGAGCCCGCTCTGGAGATTCTCCGCTCT GTACCCGAAGCCCCCGTCGAGCAAGCTGCAGCAGGCATCAACTTCGGAGG TGTGATTGCAAGTGTGCGTTTTCCCAATCCGGAACACACCAAAGAGGTCC TGAGCTTGGACGTCCGTGTGCAAGACAAGCCTACCCATACCCGGTTTCTC TATCGATTTGGGTCTCCCGTTCATCGGACTCCCTGGTGCCGAGTATTGTT TTACCGATGCACGTCAAGCATTGCTGTTTACAGACATACTCCGTATCTCC TACTTTGTTGGTTGCAGAAACCCACACACCCTTTCCGTTTACTCAATGCG GTCTGTCAGGTATCGATTATCAAAACGCACTCTCCGCTACGCTGTTGGTC ATATTGTGAACACCTTGACGGCCGGGTTTGGTGGGAAATAGTGTGTTGGG CTGGCGGTCAAATGACCGTTCCCGAATTGCCGTCCTCGACCAAATTTTTC TTCAGATGTTCGGTTGCGGTGCCGAGATTAGCGCACCCTGAATGGCAAAT CGATATTCCCATGCATGCGTCGTATTCGATGCCTCTCCGTTGTGCCTTGC ATACAGGCTATCTTGACTGGTGGCCAGCAGTGCAAATGGAACGTCCACGC CAGTCCTGACGGGTCTCTTGAAGACCTCAGCACCGGCAGGAAGTACCCGT ACCTCTTCTGGGAAGCAGATTCTTGCGACGGCCGAGTTTCGCGGAGCTTT GGTTTGAACGAGACGAGGTCGTTTTGCGTGGCAGGGGACGCCGCAGGTAC GATGCGCTTCTTTACTGGCTTTAGGCATTCTTCCCTGTATCAAGACATTT TTGAATGCTCGCGCTTCCGATGTCCTCATTGGTGCGGCAACACACAACGT TTTTTGGCTCTGCTCATCCCATTGTTGACACTCGTCACCCCATCCGCTAC TATTCTCCACTGTTGCTTTTTCGTGATCCGCTTCCTTCGGCAGGCGTGTT CCTTGACGGTTCCCTGGAGCGCCTCGGGCTCAACATGCGGGAGCGCTGCG ACATGGTCACCTACTGGCTGCCGCAGCTGGAGTCTTCGCCCTTCAACGTC ATCAACTTCGTGGACGTAAAGCGGTACGAGAAGGTAGCCCGTCTGACCAT TGCGCCTGCTCCGGACGTCACGATCCGCATCTTCATGGCCTTCAGGTGGG TCGTGAGCACCTGTTCACGTGCTATTTCGATTTTGCCAGTGAATAGTTAG GGGTGCTAATCTGGCCTTGTATGCGCGTAGAAATGTGTCCGGTCTGTTCG AAAACTTCTGCCTGCAGAAAAAAAAAGGAGTCCTTCTGACGACGCCGAAC ATCAAACTACTTGATTTTAAACCGCTTTCATGTTCATTTTTGGGACAGAT GTCCTTGCGCCCAGGGACATGTTGGGCCTTTACACTCTTCACACACCTGC GTACGGGCAGTGACCGGAATACCTTGAGCTCCGATTTTCATTTGTATAAA AAGGGAGCCGCAAAAGAGCAAAACCCTCCGATTTTGACACTTTTTTCTCC GTTTCCTTTCCTCTCGGCGGAGTAGCTGCGACACGCGAAAATCGGAGCTG GGTTGCGATTCAGAGCCAACAGCACAGATGGAAGTAGTTCAATCGCGCAC GCTGTCGGGGAGAAGTAGAGCCTCAAAAATGGCCAATTTTGCCCGAATTC TGGCTTAAGGTTCCGTCCGCTGGGTACGGACGAGCGGAAAAAAAAAACTT CACGTCTTTTTTGGTTGCGAGGGTAGCACAACATCATTCGGCATGCGCAA GTTAGAGGTTCTGCTGCCGCGACCACCCTACGCGGTGACAGCTGGGTGTG CGTTTGCTACTCCCCAGCGATTCGTGCGACTGCTGAACTGGAGATGGGTG TGTGTGGAGTGTAGCAAAACAGGAAAGCGAGGGCCTGGTTGCTGAAAATC CGAGTTTTCTCTTCAACTGATCTGCTGGCTGTTCCATTGTTCAGCTACAT CCTCGCAGATGCTGCTGCTGGGATACAGAGAAGAGGGACATAGATCGCTA GCACCCCCGCGCACGCACGAAGAACAAGTCCGTTAAGCTCGTGGTATTTT CATCGTCTAGTGTTATCAGTAAAGCCGCAGGTGGTAAAGCAAAGTTGGTG TACAGCACCAAGAAGACATGAAAAAAAATGCCAAAAGCGCCAAAAGGCCA AAAAAAGGCTCGCGGCACACCATCGCTTTGTGTGCCGATCCCGCTCGATA GACCTACGAGGCTAGACATCCTACCACAAGGTCGGGGACCACAAGATCCC GGCCTCCTTTGTAGGGGCACGGTGGCGGCAAGCAATGCCAAGCAGTGTCT TATCTGTTTCCCGCAGCAGCATTTGCAATGACATACGACGTTTTCAGTCC GGATGCAACGGATTCTTTTTTGGCCACAGACACACCGATCGCAGCAGCAG CAGCAGCAGGATCATCTTTCCATGTGGAAGATCCGGAACACATTTTGAAA ACAGTTCCTATATGTTTGTTGAGCCGTTAGCACCCCTAACAGTGCTTGGT TGAGCCTTGTTGTGCTCAAGGTAAGGATCCATCTGTTCACGGTTCGGGGA CTCAAACGTTGGTCGGATGAGATACAAGTGCCGCCTTTGAAATGTGTCAT GTTGACAACATCAGTGGCCTCGTATTGGAATAGATAACATCAGTGGCCTC ATCTTGGAAATGTAGATTCCTAGTTTGTGTACTTTGTATACCCGTACATT GATTTTCACAGGTCACACGCTTCAATGCTCCAATGAAAGTAGGTCACACG CCACCGTTTGATAGCCTCCAAAGCCTTGTACAAGTAGTACATTATCATCT CATCGTTCCAGTTCTCTTCACCTCACGTCATATGTGCACGGTAATGCGAT TGAAATTGCAGGGGTATCGATGCGTACGACGCGGAGCTGGACACCGCCAA GATTGAAGACCTACGGGCGCCTGCAAGGAAGGGATTTGTTGCTGTAGAGT GGGGAGGCATGAACCTCAACGGGTCCTCGCACGACTAGGAGGTCAAATCA CCTGCCTTTCTTGTGTGAAAAATCTGCTGCTGATAGGGTCGAGCACAGGG TCAAGAGCTACAACTGGGAATGCTTCTCTTCTTCCCGCCTAGCTGCAAGG TCGTAGATGTACGTCTGTTGACGAAATCCTTCCTTGACGCCGGGTGGTTT GAGAGGAGAACATCGCAGTCGAGGACGTTATGAGATACTTCACACTGAAG TCGTGACTGGGTTCATAGTCCTGCAGACAAAAGCTGACCACGATGAGGCG GAAACCTCCCGTGCGTGTGCCATGCTCGAGTGTGTTACCACAACGCTGGT AGATACGCACGCCGAAGCTTCGTCTGGTGTTTTTGAAATGGTTACGAAAT GAGTTTGACATCGGCTTTCGGCGGTTGTCGCGTCTCGATCTCGGCCAAGA AACGGGGCTGCGATTACGAGCGGGAAGGTTTTCACGCAATTCAACAATGC AACAGCTCATTGCTCCACCTCGCACACGGAACTGCCGGAGACAAAACGAA GTTACGTGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:668068..672227-

>mRNA_Ecto-sp6_S_contig84.17611.1 ID=mRNA_Ecto-sp6_S_contig84.17611.1|Name=mRNA_Ecto-sp6_S_contig84.17611.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:668068..672227- (Ectocarpus species6 EcLAC_371)
ATGATGGCAAAGAAGGAGGAGCCGGCGCGTGTACTTAGGATTATAGTCCG
AGACCAAACTGGCGAGGAAACGTACTTCAGAGTGCGCTCCACCGTTGCTA
TGAGCAAGATCAAACACACGTATTGCAGCAGGAAGGGAGTCTCGACTGGA
GCAATGGAGTTCCTTCTAGATGGAGACCGAGTAGAGGACGACGAGACTCC
GGCTAGTCTCGAAATTGAAGACGATGACCAAATCGACGCCCGGCTGAACC
AGAGGGGGGGAAAGCCCGTGATCCTCCTGTACCCGTCAGTCCCCCTGGAT
ACCACTGTCACGCTGGAGCTGAGCCCGCTCTGGAGATTCTCCGCTCTGTA
CCCGAAGCCCCCGTCGAGCAAGCTGCAGCAGGCATCAACTTCGGAGGCTA
TCTTGACTGGTGGCCAGCAGTGCAAATGGAACGTCCACGCCAGTCCTGAC
GGGTCTCTTGAAGACCTCAGCACCGGCAGGAAGTACCCGTACCTCTTCTG
GGAAGCAGATTCTTGCGACGGCCGAGTTTCGCGGAGCTTTGGTTTGAACG
AGACGAGGTCGTTTTGCGTGGCAGGGGACGCCGCAGGCGTGTTCCTTGAC
GGTTCCCTGGAGCGCCTCGGGCTCAACATGCGGGAGCGCTGCGACATGGT
CACCTACTGGCTGCCGCAGCTGGAGTCTTCGCCCTTCAACGTCATCAACT
TCGTGGACGTAAAGCGGTACGAGAAGGTAGCCCGTCTGACCATTGCGCCT
GCTCCGGACGTCACGATCCGCATCTTCATGGCCTTCAGGGGTATCGATGC
GTACGACGCGGAGCTGGACACCGCCAAGATTGAAGACCTACGGGCGCCTG
CAAGGAAGGGATTTGTTGCTGTAGAGTGGGGAGGCATGAACCTCAACGGG
TCCTCGCACGACTAG
back to top