mRNA_Ecto-sp6_S_contig84.17610.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17610.1
Unique NamemRNA_Ecto-sp6_S_contig84.17610.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 2.280e-70
Identity = 140/287 (48.78%), Postives = 170/287 (59.23%), Query Frame = 1
Query:   37 KSEVTIFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPVDTTVTLELSPFWSFSALYPKSPSSKLQQAAQDP--------------KVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHSTCPVVKLVSRLSWPVTSSAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            ++E++  IKTLTG+ H IRAFPSETVLD+K+K +   GI  +QQR+I+AG+Q  D  TLR  NI+NG   H+    LS RKPVILLYPPAPVD TV +ELSP WSFS+LYPK     L+Q A D               K ++   P G+ +  +  R Y +  W   S     D R +       D   +FC A                       +  FL+ ALERLGLN+RERCDMVT WLP LE S FNVIYFV VER+E+AARLTI P PDVTIRVFMAFR
Sbjct:  155 ENEISFSIKTLTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHL---VLSLRKPVILLYPPAPVDITVAVELSPLWSFSSLYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADS----SDGRVTRSFGL--DGSRSFCVAGE--------------------AAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFR 412          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: A0A8H8JUU4_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JUU4_9AGAM)

HSP 1 Score: 160 bits (405), Expect = 1.320e-42
Identity = 109/275 (39.64%), Postives = 145/275 (52.73%), Query Frame = 1
Query:   34 GKSEVTIFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPV-DTTVTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHSTCPVVKLVSRLSWPVTSSAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
              S +T+F+KTLTG+T  + A+ S+T+  IK K +   GI  DQQRLI AGKQLEDGL L  YNIQ+  TLH+ L  L G KPVI L+PP P  D  + L L+  W FS LYP +  S+     Q    ++   P  T   +   R   +  W   S    + +       TP + +  F F P+    S  P   +V  L   VT   +++ AL  LGL+   RC  +TYWLP L+   +  + F+    +E AARL I P PDVT RVFM FR
Sbjct:  116 SSSIMTLFVKTLTGKTITVYAYRSDTIDCIKAKIQDREGIPPDQQRLIFAGKQLEDGLMLIDYNIQDNSTLHLVL-RLRGGKPVIYLFPPIPTSDIRIELALTKRWGFSVLYPPAAISRTADDGQSVLWTVDAKPDSTLFDRATGREVSYLFWEAHSNSTELPSPACTRACTPVEDI--FPFDPARP--SLTPADSVVLPLD-KVTE--YIDDALLSLGLHTEARCSFITYWLPDLQRHQYIALRFLPQPDYEAAARLNITPIPDVTTRVFMLFR 382          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: V2XEN0_MONRO (Ubiquitin family protein n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=V2XEN0_MONRO)

HSP 1 Score: 153 bits (386), Expect = 6.420e-40
Identity = 105/275 (38.18%), Postives = 141/275 (51.27%), Query Frame = 1
Query:   49 TIFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPVDTTVTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFL---LIDARPSGETPTPHDRL--HTFCFAPSTHPHSTCPVVKLVSRLSWPVTS-SAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            T+FIKTLTG+T  + A P ET+  IK K +   GI  D+QRLI AGKQLEDG TL  YNI+   T+H+ L    G KPVI L  P   +  V L L P W FSA+YP  P   ++Q     K   +     T +  N T   E S   + SY     L D      +P P  R+   + CF P+       PV+   + +  P+     +L+ AL  LGL+   R   +TYWLP L    +  + F+    +E AA L ++P PDVT+R+FM FR
Sbjct:  111 TLFIKTLTGKTIRLEAAPLETIDKIKVKIQDLNGIPPDEQRLIFAGKQLEDGRTLSDYNIEKNSTIHLVLMRRGG-KPVIYLLSPCEQEARVQLSLVPQWEFSAIYPVVP---IEQGCFPSKGQSIEWLVKTHKDGNLT---ELSTGADVSYLFWEALTDPDSLQMSPPPSPRMGQSSECFIPNK------PVLNSANSVVLPIGMIPQYLDKALLALGLHTEARTSFITYWLPSLLKHTYVALRFLPQAVYEPAAPLNVSPPPDVTMRIFMLFR 372          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: A0A8H8MIN4_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MIN4_9AGAM)

HSP 1 Score: 150 bits (380), Expect = 1.570e-39
Identity = 97/286 (33.92%), Postives = 140/286 (48.95%), Query Frame = 1
Query:   37 KSEVTIFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPVDTT-VTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHSTCPVVKLVSRLSWPVTS------------SAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            +S + ++I+T+T + + I   P +T+ D+K K E   GI  DQQRL+ AGK LED  TL HY+IQ    +H  +  L G KPV+ L PPAP +   V L L+  W FSALYP +P        Q     +   P GT  +    R   + ++G  S +LL+  + +   PT        C    + P S    V      S PV +            + +++  L  LGL+   RC  +TYWLP L+      + F+    +E AA + + P+PDVT RVFM FR
Sbjct:   39 QSTMKVYIRTITSQVYSIDIEPYDTIGDLKSKIEEKDGIPTDQQRLVFAGKMLEDKNTLNHYDIQKECLIHQVV-RLRGGKPVVYLLPPAPTNNIRVDLALTQAWDFSALYPPTPICPTVGGGQSVSWIVDAKPDGTLFEHGTGREVSY-LFGKHSAYLLLIFKSTQRHPTSSTNPALPCSPAVSRPGSPVQEVASTFDPSRPVITPSNSTVLPFEKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQQHKHIALRFLPQSEYEAAAPMDVTPSPDVTTRVFMLFR 322          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: A0A8H8J338_9AGAM (Ubiquitin family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8J338_9AGAM)

HSP 1 Score: 149 bits (375), Expect = 2.390e-39
Identity = 94/270 (34.81%), Postives = 137/270 (50.74%), Query Frame = 1
Query:   52 IFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPVDTT-VTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHSTCPVVKLVSRLSWPVT-SSAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            +++KTLTG+T  +    S+T+ ++K K +   G   +QQRL+ AGKQ+ED  TL  YNIQ  YT+H F+ TL G KPV+ L+PP P +   V L L+P WSFSALYP +         Q     +   P GT   +   R   +  W  +     +   P+   P    +     F PS       PV+   +    P   ++ +++  L  LGL+   RC  +TYWLP L+      + F+    +E AA + + P+PDVT RVFM FR
Sbjct:    3 VYVKTLTGKTITLEVESSDTIANVKAKIQDKEGYPPEQQRLMFAGKQIEDDCTLGDYNIQKEYTIH-FVSTLRGGKPVVYLFPPLPTNRIRVDLALAPAWSFSALYPSASVRPTAGGGQSVAWIVDAKPDGTLSDRGTGREVSYLFW-EAHTNPALPCSPAVSRPGSPVQEVAATFDPSR------PVITPDNSTVIPFDKATGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFR 264          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: A0A8H8MCD0_9AGAM (Ubiquitin family protein n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MCD0_9AGAM)

HSP 1 Score: 149 bits (375), Expect = 2.200e-38
Identity = 105/282 (37.23%), Postives = 146/282 (51.77%), Query Frame = 1
Query:   22 VFAPGKSEVTI--FIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPV-DTTVTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVW-GNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHSTCPVVKLVSRLSWPVTSSAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            +  P ++ V +  F+KTLTG+T  ++++  +T+ ++K K +    I  DQQRLI AGKQLEDG TL  YNI    TLH+ L   +G KPVI L+P AP  D  V L L   W FSALYP  P+       Q     +   P  T      +R   +  W  +S+  L +   PS       D L    F P+ +P  T P   +V  L     ++ +++ AL  LGL+   RC  +TYWLP L+   +  + F+    +E AARL I P PD+T RVFM FR
Sbjct:   92 IHTPNQNFVILDLFVKTLTGKTISLQSYRHDTIDNLKVKIQDKERIPPDQQRLIWAGKQLEDGRTLNDYNISANATLHLVLEIRAG-KPVIYLFPSAPATDIRVELSLVNHWGFSALYPPVPTCDTVNHGQSVSWIVDAKPDSTLFDHATSREVSYLFWEAHSNPTLPLSPTPSRPGTPLADPLP---FNPA-YPSLT-PADSVVLPLD---KTTGYIDDALLSLGLHTEARCSFITYWLPELQRHQYIALRFLPQPDYEAAARLNITPMPDITTRVFMLFR 364          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: A0A4Y7TAI2_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7TAI2_9AGAR)

HSP 1 Score: 146 bits (368), Expect = 1.660e-37
Identity = 95/279 (34.05%), Postives = 147/279 (52.69%), Query Frame = 1
Query:   43 EVTIFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPA--PVDTTVTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPST------HPHSTCPVVKLVSRLSWPVTSSAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            E+TI++K  TG    I+A+PS+T+ + K K +   GI  DQQRLI AGKQLEDG  L  Y ++N   L++ +  L G KPVI ++PP+   V+ +V L L P W FS +YP   +S  +   Q  + ++     G   ++N      +  W   +   L +  P    P+P  +  +    P T      H ++T  +V  VS+++       +L+ AL+ LGL+   R   +TYWLP L    +  + F+    +EKAA L ++PAPDV  R+FM F+
Sbjct:   77 EITIWVKRDTGAIVDIKAYPSDTIDNFKAKIQDREGIPADQQRLIFAGKQLEDGRLLSDYGLRNEDVLYLVI-RLRGGKPVIYVFPPSGSEVNASVKLSLVPEWEFSVIYPIVSASITKVGGQTLEWNVKASSDGVLLEKNTGLEVSYLFWEAEALKRLSE--PISPLPSPTSKYASLESVPETFIPNQPHINATNSIVLEVSKMT------PYLDKALKELGLHTEARTSFITYWLPALLKHKYVALRFLPQTVYEKAAPLEVSPAPDVVARIFMLFK 346          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: A0A8H8MJY2_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MJY2_9AGAM)

HSP 1 Score: 142 bits (357), Expect = 1.080e-36
Identity = 92/270 (34.07%), Postives = 133/270 (49.26%), Query Frame = 1
Query:   52 IFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPVDTT-VTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHSTCPVVKLVSRLSWPVTS-SAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            +++KTLTG+   I    S+T+ ++K K +   G+  DQQRL+ AGKQ+EDG TL  YNIQ   T+ + +  L G KPV+ L+PP P +   + L L+P WSFSALYP  P        Q     +   P GT       R   +  W  +     +   P+   P    +     F PS       PV+   +    P    + +++  L  LGL+   RC  +TYWLP L+      + F+    +E AA + + P+PDVT RVFM FR
Sbjct:    3 LYVKTLTGKKTTIEVESSDTIDNVKAKIQDKDGVPPDQQRLLFAGKQMEDGRTLSDYNIQRESTV-ILVYRLRGGKPVVYLFPPLPTNNVRIDLALTPAWSFSALYPSVPVRPTAGDGQSVAWIVDAKPDGTLSDHGTGREVSYLFW-EAHTNPALPCSPAVSRPGSPVQEVASTFDPSR------PVITPDNSTVLPFDKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFR 264          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: V2WVS7_MONRO (Ubiquitin family protein n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=V2WVS7_MONRO)

HSP 1 Score: 146 bits (369), Expect = 5.870e-36
Identity = 104/278 (37.41%), Postives = 141/278 (50.72%), Query Frame = 1
Query:   40 SEVTIFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPVDTTVTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGE---TPTPHDRLHTF--CFAPSTHPHSTCPVVKLVSRLSWPV-TSSAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            S   IF+ T+TG T  +    S+T+ ++K K E   G   DQQRLI AGKQLED  TL  Y+IQ   TLH+ + +L G KPVI L  P   +  V L L P W FSA+YP  P   ++QA    K   +     T +  + T   E S   + SY L  +A  + E   +P P  R+  F  CF P        P++   + +  P+ T   +L  AL  LGL+   R   +TYWLP L   A   + F+    +E AA L ++P PDVT R+FM FR
Sbjct:  564 SGTRIFVLTVTGLTLEVPVKFSDTIANVKAKVENLDGTPSDQQRLIFAGKQLEDECTLSEYDIQKNSTLHLVV-SLRGGKPVIYLLSPCEQEARVQLSLVPQWEFSAIYPVVP---IEQACSTSKGQSIEWLVKTRKDGSLT---ELSTGADVSY-LFWEAHTNSEIQMSPPPSPRMEQFSECFIPDQ------PMLNNANSVVLPIETIPQYLNKALLALGLHTEARTSFITYWLPSLLKHAHVALRFLPQAVYEPAAPLNVSPPPDVTTRIFMLFR 827          
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Match: A0A8H8MML9_9AGAM (Ubiquitin family protein n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MML9_9AGAM)

HSP 1 Score: 139 bits (350), Expect = 1.150e-35
Identity = 93/270 (34.44%), Postives = 133/270 (49.26%), Query Frame = 1
Query:   52 IFIKTLTGETHIIRAFPSETVLDIKEKSERAGGISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYPPAPVDTT-VTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSRKQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHSTCPVVKLVSRLSWPVTS-SAFLEGALERLGLNMRERCDMVTYWLPLLEPSAFNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR 855
            + +KTLTG+T  +    S+TV ++K K +   GI  + QRLI AGKQ+EDG TL  YNI    T+H+ +  L G KPV+ L+PP P ++  V L L+P WSFSALYP +P              +   P GT       R   +  W  +     +   P+   P    +     F PS       PV+   +    P    + +++  L  LGL+   RC  +TYWLP L+      + F+    +E AA + + P+PDVT RVFM FR
Sbjct:    3 LIVKTLTGKTIWVEVETSDTVDNVKAKIQDKEGILPEVQRLIFAGKQMEDGRTLSDYNILKQRTIHV-VTRLRGGKPVVYLFPPLPTNSIRVDLALTPAWSFSALYPSAPVRPTAGDGHSVAWIVDAKPDGTLSDHGTGREVSYLFW-EAHTNPALPCSPAVSRPGSPVQEVAATFDPSR------PVITPDNSTVLPFEKVTGYIDDVLLSLGLHTEARCSFITYWLPDLQRHKHIALRFLPQSEYEAAAPMRVTPSPDVTTRVFMLFR 264          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI2.280e-7048.78Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A8H8JUU4_9AGAM1.320e-4239.64Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]
V2XEN0_MONRO6.420e-4038.18Ubiquitin family protein n=2 Tax=Moniliophthora ro... [more]
A0A8H8MIN4_9AGAM1.570e-3933.92Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]
A0A8H8J338_9AGAM2.390e-3934.81Ubiquitin family protein n=2 Tax=Ceratobasidium sp... [more]
A0A8H8MCD0_9AGAM2.200e-3837.23Ubiquitin family protein n=2 Tax=Ceratobasidium sp... [more]
A0A4Y7TAI2_9AGAR1.660e-3734.05Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A8H8MJY2_9AGAM1.080e-3634.07Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]
V2WVS7_MONRO5.870e-3637.41Ubiquitin family protein n=2 Tax=Moniliophthora ro... [more]
A0A8H8MML9_9AGAM1.150e-3534.44Ubiquitin family protein n=1 Tax=Ceratobasidium sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:665880..667209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score236.1
Seed ortholog evalue2e-59
Seed eggNOG ortholog2880.D7G4B4
Model size858
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
Cds size858
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350475.7610683-CDS-Ecto-sp6_S_contig84:665879..6663501682350475.7610683-CDS-Ecto-sp6_S_contig84:665879..666350Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 665880..666350 +
1682350475.771919-CDS-Ecto-sp6_S_contig84:666462..6666431682350475.771919-CDS-Ecto-sp6_S_contig84:666462..666643Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 666463..666643 +
1682350475.781431-CDS-Ecto-sp6_S_contig84:667003..6672091682350475.781431-CDS-Ecto-sp6_S_contig84:667003..667209Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 667004..667209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17610.1prot_Ecto-sp6_S_contig84.17610.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 665880..667209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17610.1

>prot_Ecto-sp6_S_contig84.17610.1 ID=prot_Ecto-sp6_S_contig84.17610.1|Name=mRNA_Ecto-sp6_S_contig84.17610.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=286bp
MVFVLPRVFAPGKSEVTIFIKTLTGETHIIRAFPSETVLDIKEKSERAGG
ISVDQQRLIHAGKQLEDGLTLRHYNIQNGYTLHMFLPTLSGRKPVILLYP
PAPVDTTVTLELSPFWSFSALYPKSPSSKLQQAAQDPKVSLLTVPFGTSR
KQNQTRFYEFSVWGNSSYFLLIDARPSGETPTPHDRLHTFCFAPSTHPHS
TCPVVKLVSRLSWPVTSSAFLEGALERLGLNMRERCDMVTYWLPLLEPSA
FNVIYFVNVERFEKAARLTIAPAPDVTIRVFMAFR*
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mRNA from alignment at Ecto-sp6_S_contig84:665880..667209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17610.1 ID=mRNA_Ecto-sp6_S_contig84.17610.1|Name=mRNA_Ecto-sp6_S_contig84.17610.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1330bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:665880..667209+ (Ectocarpus species6 EcLAC_371)
ATGGTGTTCGTTTTACCGCGCGTTTTCGCTCCCGGAAAAAGCGAAGTGAC CATTTTCATCAAGACGCTCACTGGCGAGACCCACATCATCAGAGCTTTTC CCAGTGAAACTGTGCTGGACATCAAGGAGAAGAGTGAACGCGCGGGAGGC ATTTCCGTCGACCAGCAGCGCCTCATCCACGCAGGCAAGCAATTAGAAGA TGGCCTGACCTTGCGTCATTACAACATTCAGAACGGTTACACCCTACACA TGTTTCTGCCTACACTAAGTGGGAGAAAGCCGGTGATCCTCCTGTACCCG CCAGCCCCCGTGGATACCACGGTCACGCTGGAGCTGAGCCCGTTCTGGAG CTTCTCCGCACTGTACCCGAAGTCCCCGTCTAGTAAGCTGCAGCAGGCAG CCCAGGACCCCAAGGTCAGTCTCTTGACGGTGCCATTTGGGACGAGCAGA AAGCAAAACCAGACGCGCTTTGTGTGTTGTGCTCCAAAATGCGCAGGGTA TGTATGATTTTCGCTCGACGTGATATCTGATACTTTCCGGCGGTGTAAGG CCGCGAGACCCTTGTTGCCCTTTAGTTTAGAAGTATGAATTTTCTGTCTG GGGCAACTCTTCGTACTTCCTTCTCATCGACGCCAGGCCTTCTGGTGAGA CGCCAACACCACACGATCGTCTTCATACATTTTGCTTCGCGCCATCAACC CACCCTCACTCTACTTGTCCCGTGGTAAAACTGGTTTCCAGGTTGTCGTG GCCAGTGACCAGCAGTGCAAATGGAACGTCCACGCTATTCCCGACGGTCC CTTCAAGACCTCAGCACCGGATGAGAGTTCCCGTACATCTTCTGGGAAGC AGATTCTTGCGACGGTCGAGTTTCCCGGAGCTTTGGGTTGGACGATACGA GGTCGTTTTGCTTGGCAGGCGACGCCGCAGGTAGATACGTTCCTGATTGG CTCTGTCTGCGAACGTCCCTATCAAGACATATTCCACGCCTGCGCTTCCG ATCTACTCGTTCGCTGCGCCCGCACATAACGTTTTCGTAGCTGGTTCATC GCATTGTTGACATCTGCCATCCCGTTCGGCGCCGTTCCCTACCGACTTTT TTTGCGATCGACGTTCTTCGACAGGCGCGTTCCTCGAAGGTGCCCTGGAG CGCCTCGGGCTCAACATGAGGGAGCGCTGCGACATGGTCACCTACTGGCT GCCGCTGCTGGAGCCATCCGCTTTCAACGTCATCTACTTCGTGAACGTAG AGCGGTTCGAGAAGGCGGCCCGTCTGACCATTGCGCCTGCTCCGGACGTC ACGATCCGGGTCTTCATGGCCTTCCGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:665880..667209+

>mRNA_Ecto-sp6_S_contig84.17610.1 ID=mRNA_Ecto-sp6_S_contig84.17610.1|Name=mRNA_Ecto-sp6_S_contig84.17610.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:665880..667209+ (Ectocarpus species6 EcLAC_371)
ATGGTGTTCGTTTTACCGCGCGTTTTCGCTCCCGGAAAAAGCGAAGTGAC
CATTTTCATCAAGACGCTCACTGGCGAGACCCACATCATCAGAGCTTTTC
CCAGTGAAACTGTGCTGGACATCAAGGAGAAGAGTGAACGCGCGGGAGGC
ATTTCCGTCGACCAGCAGCGCCTCATCCACGCAGGCAAGCAATTAGAAGA
TGGCCTGACCTTGCGTCATTACAACATTCAGAACGGTTACACCCTACACA
TGTTTCTGCCTACACTAAGTGGGAGAAAGCCGGTGATCCTCCTGTACCCG
CCAGCCCCCGTGGATACCACGGTCACGCTGGAGCTGAGCCCGTTCTGGAG
CTTCTCCGCACTGTACCCGAAGTCCCCGTCTAGTAAGCTGCAGCAGGCAG
CCCAGGACCCCAAGGTCAGTCTCTTGACGGTGCCATTTGGGACGAGCAGA
AAGCAAAACCAGACGCGCTTTTATGAATTTTCTGTCTGGGGCAACTCTTC
GTACTTCCTTCTCATCGACGCCAGGCCTTCTGGTGAGACGCCAACACCAC
ACGATCGTCTTCATACATTTTGCTTCGCGCCATCAACCCACCCTCACTCT
ACTTGTCCCGTGGTAAAACTGGTTTCCAGGTTGTCGTGGCCAGTGACCAG
CAGCGCGTTCCTCGAAGGTGCCCTGGAGCGCCTCGGGCTCAACATGAGGG
AGCGCTGCGACATGGTCACCTACTGGCTGCCGCTGCTGGAGCCATCCGCT
TTCAACGTCATCTACTTCGTGAACGTAGAGCGGTTCGAGAAGGCGGCCCG
TCTGACCATTGCGCCTGCTCCGGACGTCACGATCCGGGTCTTCATGGCCT
TCCGGTAG
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