mRNA_Ecto-sp6_S_contig84.17571.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig84.17571.1 vs. uniprot
Match: D7FRJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ6_ECTSI) HSP 1 Score: 510 bits (1314), Expect = 1.660e-171 Identity = 294/464 (63.36%), Postives = 298/464 (64.22%), Query Frame = 1
Query: 388 PQVSPPPGKDPESKRESLTHLYNEKALRFGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQAQLAGLTGESNRKMNEEDALIEEQAFMENLTKAELRESRALCSSLRVKLKYYGDEVARLRQGMSFPQIVLDKVDDDEQGPRNAKVHNSLTEDGVSMPILPAGKKAVVLPKSPARKAKTERPSLAADDVVTILELSTEKMNMHARHETELNKMLSQISTESSKQTSDLNALAKLIDGVHFINFLKGINKEGRKAMRRTKETQTRPTRDKKSDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIGVASAPKKIPTLGYMLRTVLDMMLVWSRSLDTPESLCKKPGGMTEIAIKHFQLLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDPATGPPFDHRSALFLYRFLAELRTVGVFSEDILRERIIKINLNKTAAA 1779
P+VSPPPGKDPESKRESLTHLYNEKALR+GIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQ DLNALAKLIDGVHFINFLKGINKEGRKAMRRTKETQTRPTRDKKSDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIG+ASAPKKIPTLGYMLRTVLDMMLVWSRSLDTPESLCKKPGGMTEIAIKHFQLLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDPATGPPFDHRSALFLYRFLAELRTVGVFSEDILRERIIKINLNKTA +
Sbjct: 7 PRVSPPPGKDPESKRESLTHLYNEKALRYGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQ---------------------------------------------------------------------------------------------------------------------------------------------------------------------DLNALAKLIDGVHFINFLKGINKEGRKAMRRTKETQTRPTRDKKSDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIGMASAPKKIPTLGYMLRTVLDMMLVWSRSLDTPESLCKKPGGMTEIAIKHFQLLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDPATGPPFDHRSALFLYRFLAELRTVGVFSEDILRERIIKINLNKTAVS 305
BLAST of mRNA_Ecto-sp6_S_contig84.17571.1 vs. uniprot
Match: A0A6H5KXR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR9_9PHAE) HSP 1 Score: 343 bits (881), Expect = 1.350e-107 Identity = 187/254 (73.62%), Postives = 191/254 (75.20%), Query Frame = 1
Query: 1189 KEGRKAMRRTKETQTRPTRDKKSDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIGVASAPKKIPTLGYMLRTVLDMMLVWSRSLDTPESLCKKPGGMTEIAIKHFQ---------------------------------------------------------LLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDPATGPPFDHRSALFLYRFLAELRTVGVFSEDILRERIIKINLNKTAAA 1779
+EGRKAMRRTKETQTRP RDKKSDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIG+ASAPKKIPTLGYMLRTVLDMMLVWSRSLDT ESLC+KPGGMTEIAIKHFQ LLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDP TGPPFDHRSALFLYRFLAELRTVGVFSEDILRERI KINLNK A +
Sbjct: 7 REGRKAMRRTKETQTRPMRDKKSDSRPGTGTGGKKRPPKKTKGSKTEILPLDLRNSIGMASAPKKIPTLGYMLRTVLDMMLVWSRSLDTAESLCQKPGGMTEIAIKHFQVFPNTSDIETTPRSTRWYMRTTCAVYCTNFKEHGIGAAPIDRSSRSRRCVLDFLCFQLLHGMENTTNLMLAQFAAGLVHFADYKRCKVLGDLLGVDDPTTGPPFDHRSALFLYRFLAELRTVGVFSEDILRERITKINLNKNAVS 260
BLAST of mRNA_Ecto-sp6_S_contig84.17571.1 vs. uniprot
Match: A0A6H5KW65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW65_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.750e-37 Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 1
Query: 382 VKPQVSPPPGKDPESKRESLTHLYNEKALRFGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQ 627
V P+VS P GKD ESKRESLTHLYNEKALR+GIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQ
Sbjct: 14 VLPRVSHPSGKDLESKRESLTHLYNEKALRYGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQ 95
BLAST of mRNA_Ecto-sp6_S_contig84.17571.1 vs. uniprot
Match: A0A8J2SLH7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLH7_9STRA) HSP 1 Score: 106 bits (265), Expect = 8.270e-20 Identity = 184/825 (22.30%), Postives = 319/825 (38.67%), Query Frame = 1
Query: 436 SLTHLYNEKALRFGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQAQLAGLTGESNRKMNEEDALIEEQAFMENLTKAELRESRALCSSLRVKLKYYGDEVARLRQGMSFPQIVLDKVDD--DEQGPRNAKVHNSLTEDGVSMPILPAGKKAVVLPKSPARKAKTERPSLAADDVVTILELSTEKMNMHARHETELNKMLSQISTESSKQ-TSDLNALAKLIDGVHFINFLKGINKEGRKAMRRTKETQTRPTRDKKSDSRPGTGTG-------------GKKRPPKKTKGSKTE--ILPLDLRNSIGVASAPKKIPTLGYMLRTVLDMML---VWSRSLDTPESLCKKPGGMTEIAIKHFQLLH--GMENTTNLMLAQFAAGLVHFADY-KRCKVLGDLLGVDDPATGPPFDHRSALFLYRFLAELRTVGVFSEDILRERIIKINLNKTAAARAARTVLGPMLPQGSPPMTVLIPCLQDANNLNSKRARPGERGKRGNTMPPGEVPLAKQTVEFDELLPQAMLAWRGVWKHRVSHIHLAFDRYSSTFQARPLVCRLQVTEEMRFGTDDAPKARDAVIVQ--LSKSLVEGRQRRKLYDTMRQAEGATQEGTGEPGMMMKLAEGMSKAQEDRLDIPAYSTAPPQTAMSWVVETTGEATCMKDYVSMNAPVVELLSEE-----DLALALNYLNPTLSNVDVRNMYKKGCKIQWDDTHTL---------------FRGLWAQEETDVGKKY-WVHMVHDLTQWAVPFHMNDFKREEIDREAFVELCLSSKILDSSPLAPHFLAQPQALW 2769
S+T + R VF+EL RQV VHS L+ L+GK + G L+ +L D + Q + + L +S + ++ + + + + ++KA LRE A C+S + ++ +E+ LR+ + + V VDD D A+ +TE+ PA +A L A+ ER LA + + + E++ E + A+ Q S +S K DL L +D F R ++ K +P T G K PP + E +PL LR + ++IP+L LR +L + L ++ + D + G A H LL G++N + Q A + + D KR ++ G+ LG+ D A P + R F++ L LR F+E +L+++ +I++N+ A R P+LP Q A L+ R +PP V + ++ D+LL W ++ +H+ + R+++ ++ V EEMRF D+ ++D ++VQ +K+ RR LYD +Q + +Q M G K E +P + + VE D + +E E +L + +N V + +G + ++ T + F A++ D Y W + + W P+ F+ +E++R+ F+E+CL +L +SP P LW
Sbjct: 57 SVTEGVRTQRARHAAVFEELRRQVRVHSPQLSKLLGKVWLGEDELVKKLCVEADKVHDTIVSSQKERSELIKQSKKALSIVERQLADVKYELAVSKATLREREAECASNKSLVESLNEELGALREQVG--KYVEGHVDDIGDRYEALKAERMKLMTEED------PATGEAYPL-------AEIER--LAKNRLQGVFEMNDEVDEILAK---------CQRSHDSLKHGLRDLTGLVASVDPDDF-----------------------RVSKSYKLKKKPSTDVGCQHVTIKVEGVRVNKSLPPPVVEEPAEEGLTMPLLLRKQMCEFPPSQRIPSLQATLRLILSLYLEKLMYDKLCDANHKRRVELG-----AFPHKYLLKKFGLQNLADEQCTQLVAAVAYHKDESKRVRLFGEYLGMGDFARPPVYGVRDGNFVFGILVALRKANEFTEAVLQDKDQQIDINRKKAVDVMRACFKPILPD------------QGAKLLH-----------RVQNLPPPSVSRNPKCIDLDDLLELTHNTWATTSRNWRTHLEFLYARHANLYR---------VKEEMRFANDNGILSQDVILVQEERAKNYTLRDARRPLYDLQQQGDVVSQLMKERASMDDDDLHG-KKRPELVAAMPFEAFDACIREIDPYVEENDIRRIFDDCKKLQTHRIETSFRELWVRHELVDGVANINQPPDEEPVLSKLMRGVEPSFETTRKMKALPRMKSPKKRKEGFDVPRAEDPEDPHAAYFWYSKEFETSVWTPPWDPKLFEVQEVERDVFLEVCLDEFLLPNSPFGSLLDKLPTDLW 794
BLAST of mRNA_Ecto-sp6_S_contig84.17571.1 vs. uniprot
Match: A0A6S8V7K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V7K6_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.150e-6 Identity = 110/456 (24.12%), Postives = 183/456 (40.13%), Query Frame = 1
Query: 436 SLTHLYNEKALRFGIVFDELIRQVAVHSMALATLVGKAFTGHHALLTRLIKVHDAREGQLQKLQAQLAGLTGESNRKMNEEDALIEEQAFMENLTKAELRESRALCSSLRVKLKYYGDEVARLRQGMSFPQIVLDKVDD--DEQGPRNAKVHNSLTEDGVSMPILPAGKKAVVLPKSPARKAKTERPSLAADDVVTILELSTEKMNMHARHETELNKMLSQISTESSKQ-TSDLNALAKLIDGVHFINFLKGINKEGRKAMRRTKETQTRPTRDKKSDSRPGTGTG-------------GKKRPPKKTKGSKTE--ILPLDLRNSIGVASAPKKIPTLGYMLRTVLDMML---VWSRSLDTPESLCKKPGGMTEIAIKHFQLLH--GMENTTNLMLAQFAAGLVHFADY-KRCKVLGDLLGVDDPATGPPFDHRSALFLYRFLAELRTVGVFSEDI 1731
S+T + R VF+EL RQV VHS L+ L+GK + G L+ +L D + Q + + L +S + ++ + + + + ++KA LRE A C+S + ++ +E+ LR+ + + V VDD D A+ +TE+ PA +A L A+ ER LA + + + E++ E + A+ Q S +S K DL L +D F R ++ K +P T G K PP + E +PL LR + ++IP+L LR +L + L ++ + D + G A H LL G++N + Q A + + D KR ++ G+ LG+ D A P + R F++ L LR F+E +
Sbjct: 57 SVTEGVRTQRARHAAVFEELRRQVRVHSPQLSKLLGKVWLGEDELVKKLCVEADKVHDTIVSSQKERSELIKQSKKALSIVERQLADVKYELAVSKATLREREAECASNKSLVESLNEELGALREQVG--KYVEGHVDDIGDRYEALKAERMKLMTEED------PATGEAYPL-------AEIER--LAKNRLQGVFEMNDEVDEILAK---------CQRSHDSLKHGLRDLTGLVASVDPDDF-----------------------RVSKSYKLKKKPSTDVGCQHVTIKVEGVRVNKSLPPPVVEEPAEEGLTMPLLLRKQMCEFPPSQRIPSLQATLRLILSLYLEKLMYDKLCDANHKRRVELG-----AFPHKYLLKKFGLQNLADEQCTQLVAAVAYHKDESKRVRLFGEYLGMGDFARPPVYGVRDGNFVFGILVALRKANEFTEAV 458 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig84.17571.1 >prot_Ecto-sp6_S_contig84.17571.1 ID=prot_Ecto-sp6_S_contig84.17571.1|Name=mRNA_Ecto-sp6_S_contig84.17571.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=956bp MPVRPRTDTSPERSKSQGISFLKPDTFPGLRQNNVLAGLQAENPSSPEDAback to top mRNA from alignment at Ecto-sp6_S_contig84:179682..193125+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig84.17571.1 ID=mRNA_Ecto-sp6_S_contig84.17571.1|Name=mRNA_Ecto-sp6_S_contig84.17571.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=13444bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:179682..193125+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:179682..193125+ >mRNA_Ecto-sp6_S_contig84.17571.1 ID=mRNA_Ecto-sp6_S_contig84.17571.1|Name=mRNA_Ecto-sp6_S_contig84.17571.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2868bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:179682..193125+ (Ectocarpus species6 EcLAC_371)back to top |