mRNA_Ecto-sp6_S_contig84.17570.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17570.1
Unique NamemRNA_Ecto-sp6_S_contig84.17570.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig84.17570.1 vs. uniprot
Match: D7FRJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ5_ECTSI)

HSP 1 Score: 526 bits (1355), Expect = 1.120e-187
Identity = 279/296 (94.26%), Postives = 284/296 (95.95%), Query Frame = 1 
Query:    1 MQVAVKQALRDWYEAARKGSEGVSGTEVVDAVITLGLNYDYKQQAQRIVFAEARDTNGLLCSVKSFTAALLACCSSDVEKEGLFRLLRGEGDRWGCGLGGVVPARTISAEERKRYDAVLEGIVLAQERNEVHSTASAAGGPTQHTEQKSTSTGQQEQAFPLESQPRLGSGSSTAPVATREKGRPTARCRPRTTPARQGGHFRSAAAVASATGNSSKGHQRRRAPGQTAPSGNGDDFVAWSSSSGRTTMAAVRSGQPQRGASAREVIRNTAEGLRDGLRKRELHLAKVEARWENYDG 888
            MQVAVKQALRDW+EAARKGSEGVSGTEVVDAV+TLGLNYDYKQ  QRIVFAEARDTNGLLCSVKSFTAALLACCSSD+EKEGLFRLLRGEGD WG GLGGVVPARTISAEERKRYDAVLEGIVLAQERNEVHS ASAAGGP  +TEQKSTSTGQQEQAFP ESQPRLGSGSSTAPVATREKGRPTARCRPRTT ARQGGHFRSAAAVASATGNSSKGHQRR APGQTAPSGNGDDFVAWSSSSGRTTMAA RSGQPQ+GASAREVIRNTAEGLRD LRKRELHLAKVEARWENYDG
Sbjct:    1 MQVAVKQALRDWFEAARKGSEGVSGTEVVDAVVTLGLNYDYKQ-VQRIVFAEARDTNGLLCSVKSFTAALLACCSSDLEKEGLFRLLRGEGDWWGFGLGGVVPARTISAEERKRYDAVLEGIVLAQERNEVHSAASAAGGPIHYTEQKSTSTGQQEQAFPRESQPRLGSGSSTAPVATREKGRPTARCRPRTTSARQGGHFRSAAAVASATGNSSKGHQRRGAPGQTAPSGNGDDFVAWSSSSGRTTMAAARSGQPQQGASAREVIRNTAEGLRDALRKRELHLAKVEARWENYDG 295
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BLAST of mRNA_Ecto-sp6_S_contig84.17570.1 vs. uniprot
Match: A0A6H5LCU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCU4_9PHAE)

HSP 1 Score: 478 bits (1231), Expect = 2.840e-168
Identity = 263/320 (82.19%), Postives = 274/320 (85.62%), Query Frame = 1 
Query:    1 MQVAVKQALRDWYEAARKGSEGVSGTEVVDAVITLGLNYDYKQQAQRIVFAEARDTNGLLCSVKSFTAALLACCSSDVEKEGLFRLLRGEGDRWGCGLGGVVPARTISAEERKRYDAVLEGIVLAQERNEVHSTASAAGGPTQHTEQKSTSTGQQEQAFPLESQPRLGSGSSTAPVATREKGRPTARCRPRTTPARQGGHFRSAAAVASATGNSSKGHQRRRAPGQTAPSGNGDDFVAWSSSSGRTTMAAVRSGQPQRGASARE------------------------VIRNTAEGLRDGLRKRELHLAKVEARWENYDG 888
            MQVAVKQALRDW+EAARKGS+GVSG EVVDAVITLGLNYDYKQ  QRIVFAEARDTNGLLCSVKSFT+ALLACCSSD+EKE LFRLLRGEGD  G GLGGVVPARTISAEERKRYDAV+EGIVLAQERNE+HS ASAAGGPTQ+TEQ+ T+TGQQEQAFP ESQPRLGS S TAPVATRE+GRPTA CRPRTT A QGGHFRSA AVASA GN SKGHQRR APGQTAPSGNGDD V WSSSSGRTTMAAVRSGQPQRGASARE                        V+RNTAEGLRD LRKRELHLAKVEARWENYDG
Sbjct:    1 MQVAVKQALRDWFEAARKGSQGVSGAEVVDAVITLGLNYDYKQ-VQRIVFAEARDTNGLLCSVKSFTSALLACCSSDLEKERLFRLLRGEGDWRGFGLGGVVPARTISAEERKRYDAVMEGIVLAQERNELHSAASAAGGPTQNTEQEFTTTGQQEQAFPRESQPRLGSSSPTAPVATREEGRPTAGCRPRTTSACQGGHFRSAVAVASAPGNGSKGHQRRGAPGQTAPSGNGDDLVDWSSSSGRTTMAAVRSGQPQRGASAREDNLPSECPEHACSKRTEESTVYSKVVRNTAEGLRDALRKRELHLAKVEARWENYDG 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRJ5_ECTSI1.120e-18794.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCU4_9PHAE2.840e-16882.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:175224..178284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size888
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000160.1
Cds size888
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350470.7424998-CDS-Ecto-sp6_S_contig84:175223..1753191682350470.7424998-CDS-Ecto-sp6_S_contig84:175223..175319Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 175224..175319 -
1682350470.7539465-CDS-Ecto-sp6_S_contig84:175544..1756871682350470.7539465-CDS-Ecto-sp6_S_contig84:175544..175687Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 175545..175687 -
1682350470.7622888-CDS-Ecto-sp6_S_contig84:175900..1762511682350470.7622888-CDS-Ecto-sp6_S_contig84:175900..176251Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 175901..176251 -
1682350470.7703238-CDS-Ecto-sp6_S_contig84:177637..1778061682350470.7703238-CDS-Ecto-sp6_S_contig84:177637..177806Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 177638..177806 -
1682350470.778027-CDS-Ecto-sp6_S_contig84:178155..1782841682350470.778027-CDS-Ecto-sp6_S_contig84:178155..178284Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 178156..178284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17570.1prot_Ecto-sp6_S_contig84.17570.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 175224..178284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17570.1

>prot_Ecto-sp6_S_contig84.17570.1 ID=prot_Ecto-sp6_S_contig84.17570.1|Name=mRNA_Ecto-sp6_S_contig84.17570.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=296bp
MQVAVKQALRDWYEAARKGSEGVSGTEVVDAVITLGLNYDYKQQAQRIVF
AEARDTNGLLCSVKSFTAALLACCSSDVEKEGLFRLLRGEGDRWGCGLGG
VVPARTISAEERKRYDAVLEGIVLAQERNEVHSTASAAGGPTQHTEQKST
STGQQEQAFPLESQPRLGSGSSTAPVATREKGRPTARCRPRTTPARQGGH
FRSAAAVASATGNSSKGHQRRRAPGQTAPSGNGDDFVAWSSSSGRTTMAA
VRSGQPQRGASAREVIRNTAEGLRDGLRKRELHLAKVEARWENYDG
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mRNA from alignment at Ecto-sp6_S_contig84:175224..178284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17570.1 ID=mRNA_Ecto-sp6_S_contig84.17570.1|Name=mRNA_Ecto-sp6_S_contig84.17570.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3061bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:175224..178284- (Ectocarpus species6 EcLAC_371)
ATGCAGGTGGCGGTGAAACAGGCACTACGCGACTGGTACGAGGCCGCTCG
GAAAGGTTCAGAAGGGGTATCCGGCACTGAGGTTGTTGACGCGGTCATCA
CGCTCGGGCTGAACTACGATTACAAGCAGGTGCATCGACACTGCACTGCC
TTACAGCAAGGGCGGCAACATTACCCAGAGAGAGAGAGGGTTAGCCAAAG
TTTCAATCCCTGTTTTTTAAGTGGAGATGGCATCACTACTTCCCGATCGA
CCGTAGAACGGTGGTCGAGCGTAGTGAAGTACATGTAGGCAAGCATGACC
GCACAACGTATTCGTGGAGACAATGTGTGAGTTGACTCCCGAACGACACG
CGTGGACGCTCGACTCAAAGGGGCCCACTACTCAAACGCCCACTTCTCCA
ATCCGGGTCAATACGGTAAAGTGTTGCTAATATCATGCTCGGTGCCCCAC
CTCATGCCGTCAATATTCTCACACAAAGCAGGCGCAGAGGATCGTCTTCG
CCGAAGCCCGGGATACGAACGGTCTTCTGTGTTCGGTCAAGAGTTTCACC
GCGGCTCTCCTGGCGTGCTGCTCGAGCGACGTCGAGAAGGAAGGATTGTT
TCGATTGTTGCGTGGAGAAGGAGACCGGTGGGGGTGCGGACTTGGAGGTA
GGTGTCGAACGCACCCTTTCCGTGTTCTGGTTGTCGTGCGACCGGTCTCT
GGTATGCATATGTTCCAAGTCACCCGGGCTGCAGGAACGTCTTTAGCGAA
AAGGCCTCCAGTTTCTGTGTCACAATCGTCAACGAACTCTCCATCCTCAT
CACATACTCTTGAGCAAACATGAAAAGCCTCCAGCTGTCGCCAAGCAAGC
TTGCTGAACGCGAACATGGCCAGGGCGTTAGCGTGTCGCTGCACGATTCT
AACGAACGGTCCGGTATTGCTCAAGGTGCTTGGGGGGTAGGCTGAAATCA
ATGATGGAATGGTCAGCGCCGGAACAGGACACCGTTCCCAGAACTAAGCC
ACAAATACTTCATCGCAATGTTCTTCAAGTATAGATTGATGTGAGACGTG
TAACCACCGACCCACGGAATGTTGACCGTGCAGGGAAATATGTGTCTACA
TACACAATACCGCATATAAAAACACAAGAAATGGTTCTGAGATCCTGGCC
TGGTTGTTCCCTGCCTTCCATCCCTCCCGTTGGGCGATGCAGGGGGCGGA
GATGCGCCCCTGCCGACGGCTGCTGTTGCAGCAGACACTGGCTTTGTTTC
AGGCGGGCCGGCTTTTATCACCCGGCTCGCGGCATATCGCAGGAAGGTGA
GCAGCATTCGACAGGATAGCAGTAACAAGGACATCTGAAGGTATCGATCC
GGCCTGGAGTAGTCTATGCTTTGTACGTCAAGTTCTAAAAGCCTCCGTAC
GCTTCCCGTCGCGAACCTAGACCTGAACACGCTCGGTTGTTCTTCGCATC
AGGTTCTCATGGCTGCGGTCGCGGAGAAATTCCCGACCCCTGGCACGGCT
TCGCTCTGGATGCCAGACAGCGAGAATAAAGGACAGCCTGAAATGGGTTG
CTGCCAGTTCCCCGAGAGTGATTCCTCCGTCGACACAGCCAGAAACTTGG
CACCCTCTACCCGGACACCCAGACTCGCTGCTACCGGAGCGGGTTGCGCG
ATTCGCGCCAGCACGAAGCATAACGATGGCATGGGTGCACCGTGTGGGCA
GTTATACTCTGTGCCTGTCAGCGGCGGGGATGGTGATGGTAGTGGTGGCT
CGGGAAGGCCATCAGGTGGATCCACAGCCAGCACCGGTACGGAATACGGC
ATCTGTTGGGAACCATTCCGATACGCCTTCTGTAGTGCTGTTGCTGGCAT
GCTCACAACAACTGTTCATCAGCACGACGCGGAGCAATGACTACCATAAA
CCTTCAAGCGAAACGCATCGCGACGCAAAGCATAGTGTGCACGATCGCCT
GCGGCACTAGCTCAGTGTTCCGCGTCAATGCTTCGAAACCAATTTTCGGT
CCAATCACCAATGCTGCTTGCCTCCGTCAACAGGCGTGGTGCCAGCCCGG
ACGATTTCAGCGGAAGAACGAAAGCGGTACGACGCTGTATTGGAGGGTAT
CGTGCTGGCCCAGGAGCGTAACGAGGTCCACAGCACTGCCTCAGCCGCAG
GAGGACCAACGCAACACACCGAACAAAAATCCACCAGCACCGGCCAGCAA
GAGCAAGCCTTCCCACTGGAGTCACAGCCGCGATTGGGAAGCGGTTCGTC
GACAGCGCCGGTCGCAACACGGGAGAAAGGAAGACCTACAGCGAGATGCC
GGCCACGCACAACGCCCGCTCGTCAAGGTGGTCATTTTCGATCGGCGGCC
GCTGTTGCTTCCGCGACTGGAAACAGCTCGAAAGGTGCGAGAGTGTTGCG
CGAGAACCATGAACCTGTTGTGGGCGACATCTAGGAGATTTGCTGCCGTC
CAACTGCTCCCGTCAGGCGCGGTGCCCCACCGGGCGTGGCACGCCGTGCT
TTGGTCCCTACTGCGAGTGTTATTATAGCTGCTATCCCCCTCTGAAAGGC
AAGAAAAATATGACCCTGTTTGTACGCATTCGTTGGTTCGAGTGAAGGCC
ACCAGCGACGTCGAGCGCCCGGGCAGACCGCACCGTCCGGCAACGGTGAT
GACTTTGTTGCCTGGTCAAGTTCAAGCGGGCGAACCACGATGGCGGCCGT
GAGGAGCGGTCAGCCTCAACGAGGGGCTTCGGCGAGAGAGGTACAAATGT
CTGAAGCAACTGGCCTTGTTCGGGCATGCCACCCTCCTTTTGAAAAAGCA
GTTCTGATTAGCCGCGCCTGGAAATTCACCGGAGGTTATTCCGTATTGAT
ATGCTCTCGAGATGATAAATACCTGTTCGTACTTTCCAAGTAGGATAACC
TCCCCTCTGAGTGCCTGGAGCAGACATGTTCCAAACGCCCTGGGAACTCG
ACTGTCAATTCGAAGGTTATCCGCAACACGGCCGAGGGACTACGAGACGG
TTTGCGCAAGAGAGAGCTGCACCTCGCCAAAGTGGAGGCCCGTTGGGAGA
ATTATGACGGT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:175224..178284-

>mRNA_Ecto-sp6_S_contig84.17570.1 ID=mRNA_Ecto-sp6_S_contig84.17570.1|Name=mRNA_Ecto-sp6_S_contig84.17570.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=888bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:175224..178284- (Ectocarpus species6 EcLAC_371)
ATGCAGGTGGCGGTGAAACAGGCACTACGCGACTGGTACGAGGCCGCTCG
GAAAGGTTCAGAAGGGGTATCCGGCACTGAGGTTGTTGACGCGGTCATCA
CGCTCGGGCTGAACTACGATTACAAGCAGCAGGCGCAGAGGATCGTCTTC
GCCGAAGCCCGGGATACGAACGGTCTTCTGTGTTCGGTCAAGAGTTTCAC
CGCGGCTCTCCTGGCGTGCTGCTCGAGCGACGTCGAGAAGGAAGGATTGT
TTCGATTGTTGCGTGGAGAAGGAGACCGGTGGGGGTGCGGACTTGGAGGC
GTGGTGCCAGCCCGGACGATTTCAGCGGAAGAACGAAAGCGGTACGACGC
TGTATTGGAGGGTATCGTGCTGGCCCAGGAGCGTAACGAGGTCCACAGCA
CTGCCTCAGCCGCAGGAGGACCAACGCAACACACCGAACAAAAATCCACC
AGCACCGGCCAGCAAGAGCAAGCCTTCCCACTGGAGTCACAGCCGCGATT
GGGAAGCGGTTCGTCGACAGCGCCGGTCGCAACACGGGAGAAAGGAAGAC
CTACAGCGAGATGCCGGCCACGCACAACGCCCGCTCGTCAAGGTGGTCAT
TTTCGATCGGCGGCCGCTGTTGCTTCCGCGACTGGAAACAGCTCGAAAGG
CCACCAGCGACGTCGAGCGCCCGGGCAGACCGCACCGTCCGGCAACGGTG
ATGACTTTGTTGCCTGGTCAAGTTCAAGCGGGCGAACCACGATGGCGGCC
GTGAGGAGCGGTCAGCCTCAACGAGGGGCTTCGGCGAGAGAGGTTATCCG
CAACACGGCCGAGGGACTACGAGACGGTTTGCGCAAGAGAGAGCTGCACC
TCGCCAAAGTGGAGGCCCGTTGGGAGAATTATGACGGT
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