mRNA_Ecto-sp6_S_contig84.17569.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17569.1
Unique NamemRNA_Ecto-sp6_S_contig84.17569.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: D7FRJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ4_ECTSI)

HSP 1 Score: 317 bits (812), Expect = 6.030e-105
Identity = 158/165 (95.76%), Postives = 160/165 (96.97%), Query Frame = 1 
Query:   16 MQLLLCLLAFFLAGLIPSATGFLVMPRSPPNFSRQSCRTATALQAQEEDATATAPPGSSDDACPGYPRCSGEYRDRGCDGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMGDITMDDSFGAMKEDADVPAPGGTKEADDGKD 510
            MQLLLCLLAFFLAGLIPSATGFLV+PRSPPNFSRQ+CRTATAL AQEEDA  TAPPGSSDDACPGYPRCSGEYRDRGCDGTG RISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTM DITMDDSFGAMKEDADVPAPGGTKEADDGKD
Sbjct:    1 MQLLLCLLAFFLAGLIPSATGFLVVPRSPPNFSRQTCRTATALHAQEEDAAVTAPPGSSDDACPGYPRCSGEYRDRGCDGTG-RISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMDDITMDDSFGAMKEDADVPAPGGTKEADDGKD 164
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: A0A6H5KYB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB9_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 1.120e-77
Identity = 128/147 (87.07%), Postives = 129/147 (87.76%), Query Frame = 1 
Query:   16 MQLLLCLLAFFLAGLIPSATGFLVMPRSPPNFSRQSCRTATALQAQEEDATATAPPGSSDDACPGYPRCSGEYRDRGCDGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMGDITMDDSFGAMKE 456
            MQ LLCLLAFFLA LIPS  GFLV+PRSP N SRQSCR A  LQAQEEDA      GSSDD CPGYPRCSGEYRDRGCDGTG RISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTM DITMDDSFGAMKE
Sbjct:    1 MQHLLCLLAFFLAALIPSVAGFLVVPRSPLNSSRQSCRAA--LQAQEEDAXXXXXXGSSDDVCPGYPRCSGEYRDRGCDGTG-RISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMDDITMDDSFGAMKE 144
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: A0A1X6PGH9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PGH9_PORUM)

HSP 1 Score: 78.6 bits (192), Expect = 4.050e-14
Identity = 37/71 (52.11%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:  241 RGCDGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMGDITMDDSFGAMK 453
            RGCDG G R++GG+GA++P+ PIKAYRPCP F     KYTR+GQSL+E+ F R+ G   D+++ D     K
Sbjct:   46 RGCDGAG-RVTGGLGAVLPFWPIKAYRPCPDFVAVGGKYTRKGQSLDEIAFGRK-GDGDDVSIGDRLKGKK 114
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: W7U314_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U314_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.130e-13
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  202 CPGYPRCSGEYRDRGCDGTGSRISGGVGA--LVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQ 405
            C  +P+C G Y +RGC GTG +I GG+    L+ W PIKAYRPCPS TEA Y Y R+GQ  +E +   R+
Sbjct:  121 CKNFPKCDGAYLNRGCGGTG-KIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERR 189
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: A0A7S1UYB2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYB2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 7.560e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:  247 CDGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFAR 399
            CDG+G RI+GG+GA+VPW+PIKAYRPCP+F +    YTR GQ L+E+ F R
Sbjct:   73 CDGSG-RIAGGIGAVVPWIPIKAYRPCPNFIDKGGIYTRAGQGLDEIAFGR 122
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: A0A7S2W5C1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W5C1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.430e-12
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:  250 DGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFAR 399
            DG+G RI+GG+GA+ PW+PIKA+RPCP+F EA  +YTR GQ L+E+ F R
Sbjct:   65 DGSG-RIAGGIGAIFPWIPIKAFRPCPNFIEAGGRYTRTGQPLDEIAFGR 113
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: A0A8J9SD27_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SD27_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 8.120e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:  241 RGCDGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFAR 399
            RGCD  G RI+GG+GA+  W PIKAYRPCP+FT+A   YTR+GQ L+E++F +
Sbjct:   69 RGCDQKG-RIAGGLGAVAEWWPIKAYRPCPAFTQAGGSYTRKGQILDEMLFGK 120
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: A0A7S2EGH4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EGH4_TRICV)

HSP 1 Score: 70.9 bits (172), Expect = 3.710e-11
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:  127 RTATALQAQEEDATATAPPGSSDDACPGYPRCSGEYRDRG-CDGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFAR 399
            +T T+L + EED  A A    S       P+ + +  D   CDG+G RI+GG+GA++ W PIKAYRPCP+F +   +Y R GQ+L+E+ F R
Sbjct:   37 KTQTSLLSAEEDTEAVADVLESSPEVTTPPKPAVKCPDCDLCDGSG-RITGGIGAVLDWWPIKAYRPCPNFIDRGGRYVRSGQALDEIAFGR 127
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: UPI001C4B0C0F (uncharacterized protein LOC121994349 n=3 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4B0C0F)

HSP 1 Score: 70.9 bits (172), Expect = 1.270e-10
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  133 ATALQAQEEDATATAPPGSSDDACPGYPRCSGEYRDRGCDGTGSRISGGVGALVP---WLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFAR 399
            A A+  QEE +     P + D    G   C  E  ++GC+G G RI GG+ A VP   W PIKA+RPCP F     +YTR+GQS++EV F R
Sbjct:   62 AGAVAEQEESSKTLLDPVTEDPLFKGCKTCGREVIEKGCNGEG-RIQGGI-ATVPGFGWWPIKAFRPCPGFVATGGRYTRKGQSMDEVAFGR 151
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BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Match: A0A5J4Z339_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z339_PORPP)

HSP 1 Score: 68.6 bits (166), Expect = 2.030e-10
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:  202 CPGYPRCSGEYRDRGCDGTGSRISGGVGALVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFAR 399
            CPG  R  G  R  GCDG+G R+ GG+G ++ W PIKAYRPC    + K  Y R GQSL E+ F R
Sbjct:   63 CPGCGREEGVKR--GCDGSG-RVVGGLGVVLKWWPIKAYRPCDELVKRKGNYKRAGQSLEEIAFGR 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRJ4_ECTSI6.030e-10595.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB9_9PHAE1.120e-7787.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6PGH9_PORUM4.050e-1452.11Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
W7U314_9STRA3.130e-1351.43Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1UYB2_9STRA7.560e-1362.75Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2W5C1_9STRA3.430e-1262.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8J9SD27_9CHLO8.120e-1260.38Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A7S2EGH4_TRICV3.710e-1143.48Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
UPI001C4B0C0F1.270e-1044.57uncharacterized protein LOC121994349 n=3 Tax=Zingi... [more]
A0A5J4Z339_PORPP2.030e-1051.52Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:170608..173093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score318.2
Seed ortholog evalue2.3e-84
Seed eggNOG ortholog2880.D7FRJ4
Model size1317
Hectar predicted targeting categorychloroplast
Exons3
EggNOG OGs2CGAC@1,2S3KG@2759
Ec32 ortholog descriptionLin-54 family
Ec32 orthologEc-09_000150.1
Cds size498
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350470.6749775-UTR-Ecto-sp6_S_contig84:170607..1706221682350470.6749775-UTR-Ecto-sp6_S_contig84:170607..170622Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 170608..170622 +
1682350470.7191815-UTR-Ecto-sp6_S_contig84:172289..1730931682350470.7191815-UTR-Ecto-sp6_S_contig84:172289..173093Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 172290..173093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350470.6883383-CDS-Ecto-sp6_S_contig84:170622..1708701682350470.6883383-CDS-Ecto-sp6_S_contig84:170622..170870Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 170623..170870 +
1682350470.6984375-CDS-Ecto-sp6_S_contig84:171647..1717681682350470.6984375-CDS-Ecto-sp6_S_contig84:171647..171768Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 171648..171768 +
1682350470.7112353-CDS-Ecto-sp6_S_contig84:172160..1722891682350470.7112353-CDS-Ecto-sp6_S_contig84:172160..172289Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 172161..172289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17569.1prot_Ecto-sp6_S_contig84.17569.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 170623..172289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17569.1

>prot_Ecto-sp6_S_contig84.17569.1 ID=prot_Ecto-sp6_S_contig84.17569.1|Name=mRNA_Ecto-sp6_S_contig84.17569.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=166bp
MQLLLCLLAFFLAGLIPSATGFLVMPRSPPNFSRQSCRTATALQAQEEDA
TATAPPGSSDDACPGYPRCSGEYRDRGCDGTGSRISGGVGALVPWLPIKA
YRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMGDITMDDSFGAMKEDAD
VPAPGGTKEADDGKD*
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mRNA from alignment at Ecto-sp6_S_contig84:170608..173093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17569.1 ID=mRNA_Ecto-sp6_S_contig84.17569.1|Name=mRNA_Ecto-sp6_S_contig84.17569.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2486bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:170608..173093+ (Ectocarpus species6 EcLAC_371)
CACAACGCACACACCATGCAGCTGCTCCTGTGCCTGCTGGCCTTCTTCTT
GGCGGGCCTCATCCCGTCAGCAACGGGGTTCTTGGTTATGCCACGTTCCC
CGCCGAACTTCTCTCGACAAAGCTGCAGGACGGCGACAGCATTGCAAGCC
CAGGAGGAGGATGCCACGGCAACAGCGCCGCCTGGGTCGAGCGATGATGC
CTGCCCCGGCTACCCCCGCTGCAGCGGCGAGTACCGAGACAGGGGATGCG
ATGGCACAGGAAGGTAGGCCACATGCGTGTGTATGGACGAGCCGCTTCTT
TCGAGGTGACAATTGATGTGTACGTCGCATACACTGCTGCGGTGTACATG
TGATACATGTGGACACGCACAAGCATCATGTTGCCTCTCGGGAACGTCCT
GAAATCATGCGACATTTGTTGCGCCGCACATGTTCAGCGCTGCGGCGAGA
GCTCTCTTGAACGGTTGCAGAAGGCATGCTTACACCATGTCGGGTTGACA
GAAGGAGGCTCAAAAGAAGAGTAGTAAGACCGGGGTTTGCCAGTGTTCAT
CTCACCGATCCTTACGTGTATTTCTCTATAGACCGTGAGCCCTGGGTGTG
TCGTAAGCGTAGACATCAGTAAGGAGATCCAGCATCCATCGCGTTCAGTG
TCATCACGAGGTACGAAGGCTATGTGTTGAGTGCACGCCGCTAACTCCCG
TGAGTCGCTTCAACCGGAATTCCAATGGTGGTTACACCCAGCTTCCCGGG
ACCTCCTCCCTGCAGAATACGTATCGTAACGCTCGTCTTGACTTCCTGGC
GGGGTCATGAGCAGGTCTTCAGTTCAGCAACAACCACTTTTCTTTCGCCG
CCACCGTGCCCGCGTTGGCAGTTGACGGATTACGTTCCACCTCGGAAACG
AAGAAAGCTTGGCACTTTCTGCAGTCCCGCTTTATGTGCGGTCATTTACC
GATTGATAAATTCATCGAAGCGAAAACGGAGCATGTATTTGGGTGAACCT
TTGATTTCGCTTCTGCCCCGCGGTGGACTCTTGCTTGGAGCAGAATTTCG
GGGGGCGTCGGGGCGCTGGTTCCGTGGCTGCCCATCAAGGCCTACCGCCC
TTGCCCATCTTTCACGGAGGCCAAGTACAAGTACACGCGCCAGGGGCAGA
GCTTGAATGAGGTGAGGACGCGATGTAGGGTATGCCACTCGGAAGCGCTT
TAGTACGTACCTGGTAGTCGGCAATGACCACTTCGAGTTGAGATCCCCCC
CGACGTCATCACGGCATTTTGACGCGATGGTTTGTTCGCCCGAAGCTCAC
AACACCACGAAAGCGCTGTCGAGCGGTGACACCAACCCTTTCGAAACCGA
TCCAGATCGCAAGGAATCTTCCCCTTGCCGTCAGGGCGCGAAGAGCAAGC
TCGCTGCAGGACGACCAGGCAGTGGTTGCGCTACATGATCCATCCGCAAC
GTTTTCGATACAAGGGCCTCGATATAGCCGACACGAAGGACATGCATGGA
ACCATTGCAACAGCTGCCGTCGTGCCGACGTCGCGAATTGTTCGGGAATG
CAGGTTGTGTTTGCTCGCCGTCAGGGCACGATGGGCGATATCACAATGGA
CGACTCGTTCGGCGCGATGAAGGAGGACGCGGACGTACCAGCACCGGGCG
GAACAAAGGAGGCAGACGACGGCAAGGACTGAACAATTTGTGGTTACTGT
GCAGTTTCGCCGCGGGACGAATAGAGAGATAGACCAAGTCCTGTTTCGTT
TGCCGTGCAGGAATAGAGCGCGTCACAATAAGAGACCCCGATTGGTCATG
GTCGTGGTTTTCGTTCACGTGCGCCGCCAATAGGGTCAAGAGCTAATCTT
GGTTGCCTTCCTTGTGTCTGATGGCCTAGGTACCATTTTCGCGGTACCCT
TTGCTGTATACTGGATGAGGTCAAATAGATACGAGGCCTTGGGCGTGAGA
GGCTTGAATGCGCTGTTGTCGGTTGTATTCTCCCTTAAGCGGGCGAGCTA
CGCTCACACCAGGTCCTGTTTCTACGACCAATTCTCGGATTTTGAGACCC
CTTTTCCAGGTGCCGTGTTGTGAGGCGTTAGATGCCACAACGTGTAGGGT
GTCGCGCACTATGTCAATCCAAGGATCCCTGCGACCGGAACCGGGGGGAG
CCGCGGCTGTACCATGGTATGCTTGGTGGTACGCACAAGCACAGTATTAT
TCAGTACGGCTTGGCCTTCCGTACTGTGACGGGGAAGGGGCAGAGTGCCC
ACACGTTTGATCTAGATAAATAGTACACCAAGGCGTTTTAGGTAGCCTGG
GCTTGTATCGCAGGTAATATCAAGCGAGATGATGGCCGTAGTTATCTAGC
CTTTTCGAAGCAACGGACCTCCAGGGGAAGAGAGAGGTCTCGGAGAGCGC
AAACCATGCGGTTCGGAGAGTAGTAGGCGCAGTGGAACCATGTTTCAAAC
GAGACCGCTAGAGCTAGCGAACGAATACGCGACTGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:170608..173093+

>mRNA_Ecto-sp6_S_contig84.17569.1 ID=mRNA_Ecto-sp6_S_contig84.17569.1|Name=mRNA_Ecto-sp6_S_contig84.17569.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=498bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:170608..173093+ (Ectocarpus species6 EcLAC_371)
ATGCAGCTGCTCCTGTGCCTGCTGGCCTTCTTCTTGGCGGGCCTCATCCC
GTCAGCAACGGGGTTCTTGGTTATGCCACGTTCCCCGCCGAACTTCTCTC
GACAAAGCTGCAGGACGGCGACAGCATTGCAAGCCCAGGAGGAGGATGCC
ACGGCAACAGCGCCGCCTGGGTCGAGCGATGATGCCTGCCCCGGCTACCC
CCGCTGCAGCGGCGAGTACCGAGACAGGGGATGCGATGGCACAGGAAGCA
GAATTTCGGGGGGCGTCGGGGCGCTGGTTCCGTGGCTGCCCATCAAGGCC
TACCGCCCTTGCCCATCTTTCACGGAGGCCAAGTACAAGTACACGCGCCA
GGGGCAGAGCTTGAATGAGGTTGTGTTTGCTCGCCGTCAGGGCACGATGG
GCGATATCACAATGGACGACTCGTTCGGCGCGATGAAGGAGGACGCGGAC
GTACCAGCACCGGGCGGAACAAAGGAGGCAGACGACGGCAAGGACTGA
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