mRNA_Ecto-sp6_S_contig84.17562.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17562.1
Unique NamemRNA_Ecto-sp6_S_contig84.17562.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig84.17562.1 vs. uniprot
Match: A0A6H5LI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI96_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 2.330e-76
Identity = 133/148 (89.86%), Postives = 136/148 (91.89%), Query Frame = 1 
Query:  424 GVYHQARRILMVPFARQASRSFLTKTDAIMLLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPSTAPEASLRVKPQQTRPRSRLRRVVSSTSSVNRTQCLKGSVGAAAGLYVEEEEERAAAVNAVR 867
            G  H   +I MVPFARQASRSFLTKTDAI+ LPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPST PEASLRVKPQQTRPRSRLRR VSSTSSVN T CLKGSVGA AGLY+EEEEERAAAVNAVR
Sbjct:    6 GGCHGGGQIPMVPFARQASRSFLTKTDAIIFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPSTGPEASLRVKPQQTRPRSRLRRAVSSTSSVNGTGCLKGSVGADAGLYMEEEEERAAAVNAVR 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LI96_9PHAE2.330e-7689.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:84377..90122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2193
Hectar predicted targeting categoryother localisation
Exons9
Cds size681
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17562.1prot_Ecto-sp6_S_contig84.17562.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 85751..89786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350469.5813544-UTR-Ecto-sp6_S_contig84:84376..845861682350469.5813544-UTR-Ecto-sp6_S_contig84:84376..84586Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 84377..84586 -
1682350469.592444-UTR-Ecto-sp6_S_contig84:84620..846871682350469.592444-UTR-Ecto-sp6_S_contig84:84620..84687Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 84621..84687 -
1682350469.6023078-UTR-Ecto-sp6_S_contig84:84728..857501682350469.6023078-UTR-Ecto-sp6_S_contig84:84728..85750Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 84729..85750 -
1682350469.7032456-UTR-Ecto-sp6_S_contig84:89786..898091682350469.7032456-UTR-Ecto-sp6_S_contig84:89786..89809Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 89787..89809 -
1682350469.7170331-UTR-Ecto-sp6_S_contig84:89932..901221682350469.7170331-UTR-Ecto-sp6_S_contig84:89932..90122Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig84 89933..90122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350469.6114638-CDS-Ecto-sp6_S_contig84:85750..857761682350469.6114638-CDS-Ecto-sp6_S_contig84:85750..85776Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 85751..85776 -
1682350469.6299248-CDS-Ecto-sp6_S_contig84:86401..866021682350469.6299248-CDS-Ecto-sp6_S_contig84:86401..86602Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 86402..86602 -
1682350469.6467526-CDS-Ecto-sp6_S_contig84:87133..872301682350469.6467526-CDS-Ecto-sp6_S_contig84:87133..87230Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 87134..87230 -
1682350469.6573312-CDS-Ecto-sp6_S_contig84:87887..880151682350469.6573312-CDS-Ecto-sp6_S_contig84:87887..88015Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 87888..88015 -
1682350469.6674325-CDS-Ecto-sp6_S_contig84:88373..884851682350469.6674325-CDS-Ecto-sp6_S_contig84:88373..88485Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 88374..88485 -
1682350469.6830666-CDS-Ecto-sp6_S_contig84:89669..897861682350469.6830666-CDS-Ecto-sp6_S_contig84:89669..89786Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 89670..89786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17562.1

>prot_Ecto-sp6_S_contig84.17562.1 ID=prot_Ecto-sp6_S_contig84.17562.1|Name=mRNA_Ecto-sp6_S_contig84.17562.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=227bp
MPQGPLQTGRERLPRPWSGQVRPVVDDGAATVPPEDQGKHSRGQWGHRSA
VPRPEVNWYPGRKDYPKLGPGVYHQARRILMVPFARQASRSFLTKTDAIM
LLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLN
NGRRPSTAPEASLRVKPQQTRPRSRLRRVVSSTSSVNRTQCLKGSVGAAA
GLYVEEEEERAAAVNAVRALPELHVR*
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mRNA from alignment at Ecto-sp6_S_contig84:84377..90122-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17562.1 ID=mRNA_Ecto-sp6_S_contig84.17562.1|Name=mRNA_Ecto-sp6_S_contig84.17562.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5746bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:84377..90122- (Ectocarpus species6 EcLAC_371)
GTGAAGTGCATTCATTGTTGTGTCTCGAGGCCCATGCATCCCTTGCCGAG
GACCGGACCCCACCACGCCGAACTAGGTTGAGGGGCGGGATCCAGGGAAT
AGTACGGCGTGGCCTTCAAGCTAGGCGAACGTGTCCTTCAACATGATTGC
CTCCCGTGACAGGCCTTCGTCCTCGTTCCGCTCCGCCTCGGTATGTATGT
AAGGCTCTGTTTCTGTAGAGCTTGTTTTTCCTTCTCACGAAGAGCACAAC
AAACAAACACGCTGCCGTCGTATGTAAAGAAGTCGGTGTGCTGCGCCTGC
TGCTCGCACGCAGGATCGTTTTCGTGACGTGGCGTCATGCCGCAAGGGCC
GCTGCAGACGGGAAGAGAACGACTACCGAGACCTTGGTCCGGGCAAGTAC
GACCGGTCGTCGATGATGGAGCTGCAACAGTCCCGCCCGAAGACCAGGGG
AAGGTGACCACAAACAACTCGAACTGCTGTTTAATACGCACGAATAACAT
GCCTTCAATGCTGAGGACAAATGATCTTCGCGGCGAACGGTCGTCCAGTC
CAGGAATCCGCAAGAGTGGTTGAACAACCTTGAAGCAAAGCCATCGACAT
ATATATACACATGGATGGATGTACGGTTGGTGCTCTCAGTGTTGGAATGT
GCCCGTCAGGTTCACCGTGTCGTTGTACCAAGCACCCGGCACAACTGCAT
TCAGAGTTTCTTCAGAGCATTTTCAATGACCCTGCAGTACACTATCGATG
GACCCCCGTCGTACGCCGTCTAAGCGACCAACTTCTACTGTAGTTTTGTC
TAGTCTTTGTGCTGTTGTCGTGATGTTCGAATAATCTGTCGCAACCACGC
ATCTATCAACTGTCAACGGTCAACAGAAACCACACCAGACGCCGGATGTT
TGATGTTTTCTGGTCGACAAGGAAAAACTAGAGACTATGCAATAGGGCCT
CCTCTTTCGCACATTGAGGCGAACGGATTGCTGTGGTCACATAGATTTGG
TCGATGTATGAAATGTACGAAGTGTTTCAGAAGCGCAAAGGACACAGGGT
AAACCCTGCTCAATACTCGACTCAGCTGCGTAAAACAGCGTGAAAGTTAG
CAAGCTGATTGGTCAAAGCCTACTTTCGACACGGTCACTGGCTGCTTTTC
TCGGGCACTTCTGTGTGACCCAAATTTCGGGACAGTACCTTGACTTGGCG
GGAGATGGAGCCCGTCCAAGGGCCAATTTTCCGAAGGAATCCCTTTCCGC
TCCCACTAGAGGCCACCAGAGCATGAACCCCTCTCCTGCCACCGGCAGAA
CACACGCGCCATGATTGATAAACCCTTCCCCCGGCAGCGAAATGCCGAGC
TGAATAGATGAAAAATACGACCAACACAGACATGCCACGGACAAGCATTT
GAACTCAAAATGCTCGTTTGCCCATTCTCGCCTTTGTCCCCTTATATTTC
CCGTCCAAAAGGCAGCTTTAATAGTAGTCTGCTGACTGTCGGACTTGCAG
CACGTGAAGCAGTGGAGCAAAAGACCTCTCGCCGATGACACTTACCTCAT
GTTGAAAAACATTGACACCAACATAACGTAGATTCAACGACTTGGAGGCT
AAGCTCGCCCGTCACACGCCCGATACCCTACCTCAAGCATTCTAGGGGGC
AGTGGGGTCACCGCTCCGCAGTTCCGCGGCCAGAGGTCAACTGGTACCCA
GGCCGGAAAGACTACCCCAAGTTGGGACCGGGAGTATACCATCAGGCAAG
TCGCTGTCCTGATTTCTCCTGATCTCGGCGCCTCAAAATCTACGGGTTTT
CAGTACGTTCGTCGGGTGGTCGAGACGTGAATAGGCGGCGTTTAGATGCC
TTCCCCGGCCTGCCCCTTACGAGCTTCAGAACAGCATTCTAGTCGTTGGG
TGAGGAGAGTTCATCCACATTACCCCCTTTTTGTACATATTTTGGCAAAA
GGTTCGTGTTTGGAGCGTAGAAGCTGATGCCACCTTCGGGGAGAAAACTT
CTGCTTAGAAGAAACGGCAACGTATGGCGTCAACAGCAGCAATCAGGTGT
GGATTCTTCGACGAAGACAACGTGAAGCACGCGCGCAGGAGGTTTTCTAC
ATTTCAGGGCGGATTCTAATGGTTCCCTTTGCACGGCAGGCGTCACGCTC
CTTCTTGACCAAGACCGACGCGATCATGCTCCTCCCGGGGAGTAGACGAG
GCTTCCACTCCTTCCTCAACAGCGGAAGATCGAAGGTACGGCGTAGGTGT
CCGACGGGGGGGCTTCGCGGACAGTAGCAATGTTCTACATCCCGTTGTCG
TGCCTTGTGCCACAGAAGGACGCCGTTCGGTCGGATATCAATGCGCAGCG
CGGACCCGTGGACATTGCCTCTCGCCCTTGAGGGATACACAAATGTAGGG
ACGGAGAAAATACAGTATGTCACGCGTGGGAAGGCTATGGATGGCAGATA
AGTATTTCCAAGTTTCAAGCAATATCGGAAGGCGTCACGAGGCCCGGCAA
AGGAACACCAAACCCGCTGTTTCAATAGAAATGTACTACAATATCGACCT
CTTCCCTCGTTCAACGGGGAAGTAGCCAAGCAAATTAGCGACAGGTATAA
AGCCCTTCCACTTTGCCACGTCTATGTCTTCTTACGAACGTGTGGTTCGG
CTTTCAAGGGAATTGTAGAAGACGAGCAGGCTGTGCGGCAGCTCCTTCGT
TCACAAGGTTCCACCGAGGGTCCGGGGTCCGCTGCCCAATGCAACCACAA
CGTTTCTCGTTCAGTTGGCACCCTGCTGTGGAAATTGATATTCTTCCGTG
TACGGCCATACGGCCAAAGTCTAGCAGGTAGCCCCCGCGTTCTGAGTTGT
TGCTTATCATAGATGCTTACGTGTACCCCCGTGTCTGAGCAGAGGCTGAT
GGGAGACGCTGTGCTGTTTAAAACAGCTAGAGCTGACGGCGAGCATCTCG
GGCCAGGATCATATGACCTACCTCCCACCCTCAACAATGGTGAGAAAGCC
TCCCGGCACAGAGTAGCGGACCGTAACGATTGTACTTGAGCATCAGACGA
CATCGGCAATACTGATCGCCACTGTTTCCTTTCTTCACCCCACCTCTTAT
CTTCCGAGTACCACCTTTCATTTTCCGAGTAGGGCTATGCATGCCACTTT
CGGTAATAGCATGACAAGCACAAACATCTATTGGGACAGGCGTGGCACGC
CCTGCCAAGCCGGTTGAAACACTCGTTTCACGACTTTCCTGCTGTTTGCT
CGATGTGGTGAACGTTGGCATCGCGGGACACTAACGTTTCGTGGAGCAGA
CGCTGCTCTATTATTGATCAACCTTGGCGACTTGAAGTACGTCTTGCGAA
GTCACTTGTGTAAGGGTCGCAGCTGGGTTTCTCACCGACTAGATCATGCT
GGATCTTTGTCTGGTTGGCACTTTTAATGCCAGACTTAACGTTCACATTT
TGAATTGATTACTGTCGCTGTCTTCCCCGTCTTGGCCTCTACACCGCAAC
CATATTTTCTTCATGGGTAGGCCGTAGGCCCAGCACAGCCCCGGAAGCAA
GCTTGCGGGTCAAGCCCCAGCAAACCCGTCCCCGTTCCCGACTTCGGCGT
GTTGTTAGTTCAACGAGCTCTGTCAATAGGACTCAATGTTTGAAAGGGAG
TGTGGGGGCGGCCGCGGGGTTGTACGTGGAGGAAGAGGAGGAGCGTGCGG
CGGCCGTCAACGCCGTCCGAGGTGCGTGTACTCCCATCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTTTCTTGAATTAACCCCGTGGAAGAATCCTGGATTGTGCTTG
GGTTGAGGACCACGATGACAATAGCAATAACAACAGAGAGTGGAGTCTAG
CCGGCACGGTAGTTCAGGTTTCGACTTTCTGTGTTCGTGGTAAATCATAC
CTGTTTTTCAGGCCGTGTTTGTTGTGTCTGATGCTGCATCAAAGCGGAAC
ATAAAATATGGAATACTGTAGTATGAGGGCAAACCAAAGAGAATTATTCG
CTGCTCCAAACTCTGTATGCGGTTGATAGAGCGGTAGCAGAGAATCTGCA
CTTTTTCTGCACCGGCTGTGTTTTATTACGCCACACTCTTTAGCTGGTTT
TTCTCGCGCCACGCTTCTGTGTTCCGCCCTCCGAAATACGAACGGACTCA
AGGAAGGCGTCGCCGTTGACAGTATGGTCAGTAGATGACGCTAGAGGGTA
GATATAGAACACTATTTATTGTATGCCACGGCACACCAATGCGCCCTTTT
CGATTTTCTGTCCCTCCGTGCCGGGCTGTTCTTGTTCACACCCCAGCTCT
CCCAGAGTTACATGTACGTTAACACGACTAGACACAACGCAAATCAGCGT
GGCCTGGCCGAGTTTCGTCACACGGCGGTTACGGATTATGACGTATGGTC
CTATCTCCGCGCCACCAGCGAAATCTATGTGGTAATCGAAGGAACCGGGT
GCTCAAGGGAGTCGGAGGCAGGAACCATCTGCTACCTTGCAAGATCAACG
TATTGGTCATATAGGTCGAGCGGCGTAGATCCTGGCGTTCATTTCAGCCA
CGGACCATCGAGTCGACGGGTTGGATTAGGTCGTGTTGTCTCATGCAAGC
GGGGAGTGTGTTTGGAAATGCGGCTGCAGGGCGTGTCTCGAGCGAGTCTG
GTGTGTTTGGGTAGAGAGCCTTGAGACCACGACGTCTCAACGAGCCGTGA
CCATCTCCGACCGGACTACCTACAGGTCCAATCGTTGGTTCTTTGTCGTT
TGTGAAATGACTGGGCTAATTGACGTAATTCTACCTCCGGGGCACCCATG
GAAACTGCCGTTTTTGCGCAGGGTTACACCCAAGGTCTTCGGCTCGGATG
ATTAGTCGTTTTTCAATTGTTTTCATTTCTTGAGGACAGCACTTGAGACG
CAGCTTTTTGCGGAGTTTCCTCTCTGTTCCCGCTTCTATTGATCGATGGA
TACGGGAGGATGCTGAAATACGGGAGACGTTGTTGCATAGAGTATGGCGT
TTACCCCCTCCGTATGATTCCCATCTGTCCGTATGAGGTTGCTTGTCGCG
GAGTTACATAGTTGCGCTCGATGTCGCGCTTTTGGTCCCAAAAAATGACG
CAGGAATGGTAAAACGTGATCAAACGTGTAAATCAAACTTGTGACGATTG
ATTCTGGGGCCTTGCAACCGACGCTGTCAATGCTGCTGTTTTTCTACTCT
TAACGGCCCACTCCGCGTAGACCAATACAAACTGTTGCGGGTTACTTGGA
GACCTCAGGGTAGTTTGTTCCGAGCGTGAAACCGTAGAGAAGAACACCAA
CGTTCTGCAAATCGCGAAGACAGCCAGAACCGTTCCAAACGGTAATCCCT
GTTCGGAAGAGTTTCTTTCCGAACCCCGTTGGTACGTTTGGTTGCCCGTG
GACTTTTGACGCCCATTTGCTCTTCCTCCGAAGGGGGCTTTGGTCGTCGG
TGGCCATGGAGGGGAGGGCCCTCTTCGTGGCCACAGCCAACAGACCCAAA
GCGGGTCGTTCTTTGGGCCTGAGGAGCTGCGCATCGTGATTGGATTAGAG
GGTCTCGGGGGTCAGATGGCGACGTTTTTTAGGAGCGAAGGCGACAGCTC
AACCGCATCTCCGAACAAGGGTCGTGTTGTGTCGCTGGAACTGTTGGTTT
CAGATAAGTGCTCACAGGGAACGAACACGAGAGACGGGCCACCCGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:84377..90122-

>mRNA_Ecto-sp6_S_contig84.17562.1 ID=mRNA_Ecto-sp6_S_contig84.17562.1|Name=mRNA_Ecto-sp6_S_contig84.17562.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=681bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:84377..90122- (Ectocarpus species6 EcLAC_371)
ATGCCGCAAGGGCCGCTGCAGACGGGAAGAGAACGACTACCGAGACCTTG
GTCCGGGCAAGTACGACCGGTCGTCGATGATGGAGCTGCAACAGTCCCGC
CCGAAGACCAGGGGAAGCATTCTAGGGGGCAGTGGGGTCACCGCTCCGCA
GTTCCGCGGCCAGAGGTCAACTGGTACCCAGGCCGGAAAGACTACCCCAA
GTTGGGACCGGGAGTATACCATCAGGCAAGGCGGATTCTAATGGTTCCCT
TTGCACGGCAGGCGTCACGCTCCTTCTTGACCAAGACCGACGCGATCATG
CTCCTCCCGGGGAGTAGACGAGGCTTCCACTCCTTCCTCAACAGCGGAAG
ATCGAAGAGGCTGATGGGAGACGCTGTGCTGTTTAAAACAGCTAGAGCTG
ACGGCGAGCATCTCGGGCCAGGATCATATGACCTACCTCCCACCCTCAAC
AATGGCCGTAGGCCCAGCACAGCCCCGGAAGCAAGCTTGCGGGTCAAGCC
CCAGCAAACCCGTCCCCGTTCCCGACTTCGGCGTGTTGTTAGTTCAACGA
GCTCTGTCAATAGGACTCAATGTTTGAAAGGGAGTGTGGGGGCGGCCGCG
GGGTTGTACGTGGAGGAAGAGGAGGAGCGTGCGGCGGCCGTCAACGCCGT
CCGAGCTCTCCCAGAGTTACATGTACGTTAA
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