mRNA_Ecto-sp6_S_contig84.17556.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig84.17556.1
Unique NamemRNA_Ecto-sp6_S_contig84.17556.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: D7FRH9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH9_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 1.690e-90
Identity = 137/149 (91.95%), Postives = 140/149 (93.96%), Query Frame = 1 
Query:  295 DIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 741
            DIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVS +D  + +   LY  YGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG
Sbjct:   15 DIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVS-VDETMNM---LYARYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 159
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A7S2UTN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTN0_9STRA)

HSP 1 Score: 202 bits (515), Expect = 6.490e-61
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = 1 
Query:  259 LENNPDKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNN--VNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKT 738
            L ++PDKKI+A D+ E ++FLGKK T+KEV D++WEVDENLDG VDW+E++LMF RNI D TGLEP+KLYNMVQFM+YD DN   V+V Q  N+      LY  YGR++ME KL+ELFG  MRE G QGGEI FL YL+AVERTQ+NTF+ +S+G+   AKT
Sbjct:  123 LRSDPDKKIRAPDLMEALRFLGKKVTKKEVADMIWEVDENLDGCVDWEEYRLMFQRNIFDRTGLEPSKLYNMVQFMIYDHDNKGLVSVDQTMNM------LYARYGRSRMEQKLRELFGTDMRENGKQGGEIDFLTYLQAVERTQMNTFLNTSLGKTTAAKT 278
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A836CM15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM15_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.340e-56
Identity = 117/274 (42.70%), Postives = 154/274 (56.20%), Query Frame = 1 
Query:    7 EEDEVINISQQEDKGLRRVYHRLCDFSQKEKLRKEIHALQAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLENNPD--KKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNM---------------------------VQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 741
            +E+ +  IS QE++ LRRV+ +LCDF+ K+ L   +H                                              R   +P   +KIKA+D+ + M  LG++CT+KEV D++WEVDENLDG VDW+EF+LMF RN+ND TGLEP+KLYNM                           VQFM+YDV+ N  VS +D  + +   LY  YGR +ME KLKELFGE MRETGTQGGEI F +YL +VERTQL TF+ +++G+A LAK G
Sbjct:    5 DEEGLTQISPQEERELRRVFDKLCDFNAKQNLT-ALHMYM------------------HMWNVCHTEEVDRLGGEIAALQQQLRALESPSGSQKIKAIDVSQSMAVLGRRCTKKEVMDMIWEVDENLDGCVDWEEFRLMFNRNVNDRTGLEPSKLYNMSFHAAKPRKKHAGLDDKPSHLLCLQAQVQFMVYDVNGNGLVS-VDETMNM---LYARYGRARMEVKLKELFGEEMRETGTQGGEITFTQYLASVERTQLATFLGTNMGKAHLAKVG 255
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: F0Y9Y6_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Y6_AURAN)

HSP 1 Score: 179 bits (453), Expect = 8.820e-53
Identity = 93/161 (57.76%), Postives = 118/161 (73.29%), Query Frame = 1 
Query:  259 LENNPDKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 741
            +E   D  I   D+ E +K LGKK  RK+V D++WEVDE+LD  V+W+E  LMF RNI D TGLEP++L+N+VQFM++D D N  VS +D  + +   LY  YGR +MEAKLKELFG+ MRETGTQGGEI FL YL AVE+TQL TF+ S+ G+AQ+AK G
Sbjct:   23 IEAESDGLISVQDLMEALKTLGKKTPRKDVEDMIWEVDEDLDCCVNWEEMLLMFQRNIRDRTGLEPSQLFNVVQFMIFDQDENGLVS-VDETMNM---LYARYGRVRMEAKLKELFGDDMRETGTQGGEIDFLTYLRAVEKTQLMTFLNSAHGKAQVAKAG 179
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A6S9HP31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HP31_HETAK)

HSP 1 Score: 177 bits (450), Expect = 3.100e-51
Identity = 105/274 (38.32%), Postives = 147/274 (53.65%), Query Frame = 1 
Query:    7 EEDEVINISQQEDKGLRRVYHRLCDFSQKEKLRKEIHA-------------------------LQAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLENNP----DKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTG 741
            EE+ ++ ++QQE++ LRRV+ RLCDF +K +L + I                           ++ K                                          LE  P    ++KI+  D+ E  +FLG+  TRK+V D++WEVDENLDG VDW+EF+LMF RN+ D TGLEPA+LY+M QFM+YD  N   V+    V +  + LY  YG+ KMEAKLK LFG  M+E+GT+GG I F +YL AV++TQL TF+ +S+G+    K G
Sbjct:    6 EEEPIVPMTQQEERELRRVFERLCDFHKKMRLAQAIEPRVERMDELKKKYTVYEEPEPEDVWKMEEKTPEQLEREREARGRLEIPEGPERAEWATLSAEVEQHRAELAALERPPAGAPEQKIRPADLLEAARFLGRPATRKDVQDVIWEVDENLDGAVDWEEFRLMFERNVGDRTGLEPAQLYHMAQFMMYDARNTGRVT----VDQTMSMLYARYGKAKMEAKLKILFGRDMKESGTEGGAITFQQYLMAVQKTQLETFLATSLGKKIAKKLG 275
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A812T3T1_SYMMI (Cam1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T3T1_SYMMI)

HSP 1 Score: 162 bits (411), Expect = 2.180e-46
Identity = 80/153 (52.29%), Postives = 110/153 (71.90%), Query Frame = 1 
Query:  259 LENNPDKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVG 717
            LE NPD+KI   DI E ++ L  K  +KEV +++WEVD++LDG +DW EF+LMF RNI D+ GLEP+K++N+ QF++YD + N  VS +D  + +   LY  YGRTKME KLKELFGE M ETG +GGEI + E++ AVE+ Q+ TF  ++ G
Sbjct:   33 LETNPDRKISCNDILEMLRRLKAKTNKKEVQEMIWEVDDDLDGCIDWGEFRLMFTRNIMDNCGLEPSKMFNLTQFLIYDHNCNGRVS-VDETMNM---LYARYGRTKMETKLKELFGENMHETGREGGEISYQEFIRAVEKVQVQTFWGTTQG 181
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A8J2X371_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X371_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.960e-45
Identity = 98/253 (38.74%), Postives = 141/253 (55.73%), Query Frame = 1 
Query:    7 EEDEVINISQQEDKGLRRVYHRLCDFSQKEKLRKEIHALQAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLENNPDKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTGTKGNQAKV 765
            E +E   I+ QE+  LRRV+  LCD+  K+K+ K +   Q +                                          +E   D  +  VD+ E +K LG+K  +K+   ++WEVDE+LDG V WDE +LMF RNI D TGLEP++L+N+V F+++D+D +  VS +D  + +   LY  YGR KME +LK LFG+ M+E G  GGEI F+ YL AVE+TQL TF+QS+ G+A + K   +GN  +V
Sbjct:    5 EGNEAAEITPQEENQLRRVHRLLCDYGAKKKVLKLLRPKQDQLEKLRQSADDEQADILVASEIQSLETDVEKLRQDLQ-----EIEKKSDGLVSCVDLLEALKTLGRKAQKKDAEAMIWEVDEDLDGCVSWDEMRLMFQRNIRDTTGLEPSQLFNVVMFLIFDLDEDGMVS-VDETMEL---LYARYGRHKMEDRLKMLFGDDMKEEGKGGGEIDFVTYLRAVEKTQLATFLQSNYGKALVNKK--QGNPERV 246
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A7S4HP37_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HP37_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.320e-36
Identity = 74/158 (46.84%), Postives = 106/158 (67.09%), Query Frame = 1 
Query:  259 LENNPDKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFG--EG--MRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGR 720
            + + P++ I+  D    ++ LG++ T++EV D++WEVDE LDG+VDW+EF LMF RNI D +GLEPA  Y+MVQFM+YD D+N  VS +D  + +   LY   GR KME  + +LFG  +G  ++E G QGGEI F+ Y + VE+ Q   F +S +GR
Sbjct:  143 IRSRPEQHIRPQDTATALRELGRRVTKREVNDMMWEVDEKLDGVVDWEEFLLMFERNIRDTSGLEPASFYHMVQFMIYDRDDNGMVS-IDETMNM---LYARLGREKMETTITKLFGGDDGAPIKEVGQQGGEINFVRYWDVVEKEQTKMFSESELGR 296
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A5A8DI08_CAFRO (EF-hand domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DI08_CAFRO)

HSP 1 Score: 139 bits (349), Expect = 1.960e-36
Identity = 86/226 (38.05%), Postives = 121/226 (53.54%), Query Frame = 1 
Query:   25 NISQQEDKGLRRVYHRLCDFSQKEKLRKEIHA-------LQAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLENNPDKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAVER 681
            +++Q E K L RV++ LCDF+ K KL KE          + A                                          ++E   +KKIK  D+ E +  LGKK T+KE+ D++WEVDENLDG VDW+EF+LMF RNI D TGLEP +L+N+VQFM+YD D    VS +D  + +   LY  YGR  ++++++ LFG+ +  TG     + F +YL AVER
Sbjct:   16 DVTQDESKQLERVFNYLCDFAAKNKLFKEREPKLERKSKILAYKKNPEAVKIIDETGRELSPEEIDFELRKIDDECADITQRIEKIEAKEEKKIKPRDLLEALGKLGKKATKKEIEDMIWEVDENLDGCVDWEEFQLMFHRNIKDTTGLEPHQLFNVVQFMMYDKDCGGQVS-VDETMHM---LYSRYGREGLDSEMRNLFGDSLSATGD--ARLTFEQYLAAVER 235
[Close]
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Match: A0A813C532_9DINO (TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C532_9DINO)

HSP 1 Score: 135 bits (340), Expect = 5.180e-35
Identity = 67/139 (48.20%), Postives = 99/139 (71.22%), Query Frame = 1 
Query:  259 LENNPDKKIKAVDIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKELFGEGMRETGTQGGEIGFLEYLEAV 675
            +++  DKK+K  D+ E + FLGK+ ++KE+ D++WEVDENLDG VDW+EF+LMF RNI D TG EP +L+N+VQFM+YDVD +  VS +D  + +   LY  YG+ ++E ++K LFG+ +       G + FL+YL+AV
Sbjct:  117 IKSKQDKKVKPKDLQEALAFLGKRSSKKEIEDMIWEVDENLDGCVDWEEFQLMFQRNIKDTTGKEPFQLFNVVQFMMYDVDFSGEVS-VDETMHM---LYARYGKARLEREMKALFGDKLH---NGNGTLTFLDYLKAV 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig84.17556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRH9_ECTSI1.690e-9091.95EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2UTN0_9STRA6.490e-6162.35Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM15_9STRA3.340e-5642.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0Y9Y6_AURAN8.820e-5357.76EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
A0A6S9HP31_HETAK3.100e-5138.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A812T3T1_SYMMI2.180e-4652.29Cam1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A8J2X371_9STRA1.960e-4538.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4HP37_9STRA1.320e-3646.84Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A5A8DI08_CAFRO1.960e-3638.05EF-hand domain-containing protein n=2 Tax=Sar TaxI... [more]
A0A813C532_9DINO5.180e-3548.20TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig84contigEcto-sp6_S_contig84:28480..33909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score275.0
Seed ortholog evalue3.5e-71
Seed eggNOG ortholog2880.D7FRH9
Model size771
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2CS8I@1,2RAUZ@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-09_000020.1
Cds size771
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig84.17556.1prot_Ecto-sp6_S_contig84.17556.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig84 28480..33909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350468.850049-CDS-Ecto-sp6_S_contig84:28479..286141682350468.850049-CDS-Ecto-sp6_S_contig84:28479..28614Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 28480..28614 -
1682350468.859523-CDS-Ecto-sp6_S_contig84:29633..297061682350468.859523-CDS-Ecto-sp6_S_contig84:29633..29706Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 29634..29706 -
1682350468.8673093-CDS-Ecto-sp6_S_contig84:29774..298181682350468.8673093-CDS-Ecto-sp6_S_contig84:29774..29818Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 29775..29818 -
1682350468.8750226-CDS-Ecto-sp6_S_contig84:30474..305951682350468.8750226-CDS-Ecto-sp6_S_contig84:30474..30595Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 30475..30595 -
1682350468.887181-CDS-Ecto-sp6_S_contig84:31114..312181682350468.887181-CDS-Ecto-sp6_S_contig84:31114..31218Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 31115..31218 -
1682350468.9015968-CDS-Ecto-sp6_S_contig84:31517..316041682350468.9015968-CDS-Ecto-sp6_S_contig84:31517..31604Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 31518..31604 -
1682350468.9105058-CDS-Ecto-sp6_S_contig84:32595..327041682350468.9105058-CDS-Ecto-sp6_S_contig84:32595..32704Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 32596..32704 -
1682350468.9185116-CDS-Ecto-sp6_S_contig84:33811..339091682350468.9185116-CDS-Ecto-sp6_S_contig84:33811..33909Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig84 33812..33909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig84.17556.1

>prot_Ecto-sp6_S_contig84.17556.1 ID=prot_Ecto-sp6_S_contig84.17556.1|Name=mRNA_Ecto-sp6_S_contig84.17556.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=257bp
MAEEDEVINISQQEDKGLRRVYHRLCDFSQKEKLRKEIHALQAKVEALSA
APQSKQAKLAANDANVKAEENRLNEEIRALEQEIVRLENNPDKKIKAVDI
WEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGL
EPAKLYNMVQFMLYDVDNNVNVSQLDNVIRIATYLYMAYGRTKMEAKLKE
LFGEGMRETGTQGGEIGFLEYLEAVERTQLNTFVQSSVGRAQLAKTGTKG
NQAKVT*
back to top

mRNA from alignment at Ecto-sp6_S_contig84:28480..33909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig84.17556.1 ID=mRNA_Ecto-sp6_S_contig84.17556.1|Name=mRNA_Ecto-sp6_S_contig84.17556.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5430bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:28480..33909- (Ectocarpus species6 EcLAC_371)
ATGGCTGAGGAAGACGAAGTGATTAATATCTCACAACAGGAGGACAAGGG
TCTGAGAAGAGTGTACCATCGTCTGTGCGACTTCAGCCAAAAGGAAAAGT
AAGCAAGGGGATGCAGGACAGTGCAGTTCCTACCCAACTAAACCCATTGC
TGAAGCTTGACTGGATGCGCGTGTGAACCAACACTATCGCCGATATGGTC
AGTATACCCTGTTTTTTTCTGAGAAAAATTTATTGGCGTTCACATTGTCT
TGTATGCATACGCATATTGTGTATCTTGTTGTTGCAGTCTACATGGGATA
GTCGAGCAGAACGTGTATATAGTCTACTGCTGTTGTAGTCTACATAGACT
ATTTAGTCGAGCAGCACGTGAAGTTCGATCGCGGCCCTGTCCTTCGGAAC
CCCCCACGCCAGCGTACAATATACTAAAACAAAAATGTTGTAGCCTTGGA
CTATGCTAACCACTCGGGGCAGCAGTGGCTGCAGCCTCGTGTCGCCAAGC
CCGTGGCAAACCTCTCAAAACAGCTGCTGTAAAGCTCCAAAGCATAAGTT
CTCTCGGGCAACCTGGGGCCGCCCGATTCTTGTATTCCAGGCGGAGAAAC
AACACGAGCGTTCTACTGCTGCACGTTTATGTCGCTCACGGCGCTTTGTA
ATTGATCACTGTATTGTTGAATTATCTGCTGCAGCACATGTGTCTTGCTC
TTATTGGTACAACGTAGCGGTATTTCCCGTATTTTGGATACGAACACTAG
CTGTATCGGTTGTGTGAAACAACACCCCGTCCCGAGGTAACACGCCGCAC
AATGCAACTCGATCCCCCTTTCAGTTTGTAGGTACCATACCGGCGACATG
TAGTCTAGCGGATGATCGCCCCGATTCTTGGCGCACCTGGCGCACGCCTG
CAGCATCACCTGAACGTGTGAAGATCAACTCTTGATAAGAGTACTCGTTG
TACCTCTTGCTCGGACGAAAAGGAGAGAGGGGCTGACTTTCTTCAGTTCT
AGGCAACGTCCAGCCTCGGCCCCGTTTCAGTTTTCAACATGTCGGCCTCA
TTTCTTTTAGCGAACTTCGCTGTTGGAAAGGGTTGTTAATGTCTCTGTTC
GCCGTTTCGGTCTACAAGACAAGAGGTCTCAGCTGGAACTGTTCACTGTG
GATCGCTTACAATACACGTTATGCTAGCAGTCAATTTCTCCTCATGTCCC
CACAGGCTTCGGAAGGAGATCCACGCATTGCAGGCAAAGGTGGAGGCGCT
TTCGGCCGCACCACAGTCGAAGCAGGCGAAACTTGCAGCCAACGATGCGA
ACGTAAAGGCAGAGGTACGCGAGAACTGACGTGGCAACATGGCGCGACAA
CCCTGTATGTTCGTGTTAGCCTGGTGGAAGTCGGCGAGTAGCGATCCATA
ACTACATGCTCCTCCGTAACGACAATGACTCAGAGATAGAGCTCGACAAA
TTCAAGAGTTCGCGCAGAGCACCTACTGCCCCCCGTTGAAGACTCCTGGG
CCACAGATATTGATACATGATATCAGCTTGCCTATGCTATCGGCCATTTC
AGTATCTTTACCCATCCCCACGCTTCATGTACATTGCGCTACACACAGCA
CCTGTAACATCCGATACTCTACCGTTCTAAGGCAAGGCCGGCTTACCCCC
GTTCGCGTGGAAAGCATTGAACCGGCCCTGAATGAACTGGACATTTAAAT
CACCTACAGTAGTAGACTTGATTGCGCTCTCAAGGCAAACATGAATGGAT
GTTTTGGGATATTCTGTGGTATTAGTAAGGGTGCGCACCAACGGTTCCAC
AGCCGAATTAGGCCAGTCAAAGACGCAAGCGTGGTCACGATTGCGGTTTA
TCAGTTTCCGATTACGGCGAAGCGTGGGTGAAACACACTGTCCAGTGAAC
GATTTTCGCACGGCGAAAGACTCAGGAAACCTATATTAGGAAACGATGTT
TCGGACTGCGTCTCGTTGATGCATCATTTCCAATGACCGTTGGTTACGTT
TGGTTCGGGGAAAATCCGTAATAGAAAATACGCATACGTACACGCTCCCT
GAACACAAGCTGTTAGAATGTTTTATGCCTCCTGATTGCCTACGCAAAGA
AAGTAAGTGCATTTCGAAAAAAGACCAGACAGGGGGCACGCGGACCCTAA
TCCTAACTTCGCCGATTGTATGCTCTATCCAGCATGTTCGTTTGGACTCA
GAAAACCTGCGTAGACTACTGAAAACTCCACTGTGGTGCATGGTGTTTCA
GTCGTGCCACCGGTGGGGTTGCCGCGTTTGACGTTATTTCTTTCTTTTCC
AACAGGAAAACAGGCTCAACGAGGAAATTCGCGCACTGGAGCAGGAAATT
GTCCGCCTGGAGAACAATCCAGATAAAAAGATCAAAGCCGTGGTGAGCAT
AGGGTCATACGACAAACACCATCAGTAGACCTCTATGGGCCACAGTGGTA
AGCGACCTTGGGGCGGTAGGGTTGATCATGGTGATGGAAGTCGTTTTACC
TATTTTGGCCATGCCAGCATGCCTGAAAGACGCTTGGAACACCTGCCATT
GTATTGCAAGGAGTTGCAAATTCACCCGAAGCATACAACAAAGTAAATGC
TAATCGTCGTTTCCTAACAGCAAATCGTCGTTTTCTAACAGGTGTGTTTC
ACACCCCATAGCCATTCTTTGATTGAAAATCGCATTGGCAGGACATCTGG
GAGCACATGAAGTTTTTGGGCAAGAAGTGCACGAGGAAGGAAGTGACGGA
CATTGTTTGGGAAGTGGACGAGAACTTGGATGGCTTGGTAGACTGGTGAG
GGACGCAGCACGGCACTTCGAATTTAAATAGGACAACGCATGCTGCCTCA
AGTCACGATTTCATGTAGCCGACTGCACTTTTTTTAACTAAGGACTGAAA
GATGTGGCAGGACTTCCATACAGGCTGGCGAACGCTTGAATGACTCAATG
GCTGGTGAGCGTGCAGTGAACGTTCCACAATGGTTTCTAACGACACCGCG
TTCACTCGCACACCCTAGAGCAGCCACGAGAGTTTCCTTGCTAAGTCGGC
AACTTCGGTCTGATGCGTGGCGAAGGGTGTGCGTTGTACGACGCTGCCCG
CCCTCAATTTCAACATCACATGTTTCTGGAAGCGGAACATCGTAAGGGGA
AATTTTTCTTTTTTCATATCGTGCATCCATGCGGTAACCCGTATATGTTG
CATTCTAAATCTACAATAGAGCGATGCATGCTTGAATTGTTTTCCTTGGT
TGCACGCGCAAAAAAACAAAAACGTTCGCCATTTCCCACGGTCTCTTGCT
GTAACGCGTGAAAGGGACGAGTTTAAGCTCATGTTCTTCCGAAACATTAA
CGACCACACGGGTCTCGAACCGGCAAAGCTATACAACATGGTGCAGTTCA
TGCTGTACGACGTGGACAACAACGTCAATGTGTCCGTGGACGAGACCATG
AACATGCTCTACGCCAGGCAAGCACAAAATACAGGGAAAATCTTCACGCT
GACTGCATGCTGAACAATCGCGGGCTATAGGCACTGCAGGAAATAGCTGA
GGCTTTCTGTATTGGACCACATACCGCTATGGAATGCAGGATGAACGAGA
TTCTACGCACCACGGCAGTCCAGCGGGGAGTTGATACGCGTTGATGAGGC
AAGCGGTTACATAGCGACGCATTGTTGATCGACGAGACGGATTTTCAACC
CGTTGCTGGGGAAACTGGGTGTCCAGTGAGGGAGGTGTGAGATGCGCCTA
CATGTTGCTGCATACATCAGCCCCGGCTTGTACGACGTTTGCGGTTGGGT
CACACCTTCAGCTCTCAAGCATGGAAGCACACGGCTTAACATGTACCCTT
ATTGTTACATCCCGCAGCACACAACGAATAAAGTCATACTCGGTCAGAAC
AACTCCGCGAGCGTGATGCGCTCTACATAATGTTCTGAATGACCGACTGC
CGCGTCGGTTCGAGTTGGGATAGCTCGTGCATGCGTTTCTGCGTTTGTTT
CTCACCAAGACGTTTCTTGCCCCACACGCTGGTGGTCCCTTGACACCGTG
CCGTCCGTACGGGTGAAACTGTGCGTTTGGCGAATGGAAAGCAACTAGAT
AATGTCATTAGGATAGCGACCTACCTCTACATGGCGTACGAATAGGGCTA
TGACCGCCGACCGTTTTCCGTCAACGTCGTCACTATCGCTGACGACCCGA
TAGGTATGGGCGAACCAAGATGGAAGCGAAGCTGAAGGAACTATTCGGGG
AAGGTATGCGAGAGACGGGGACGCAGGTGAGGTCTGTGCTTGGTCCTCTT
TCTTTTCTTCACGCAGAAACAACGTTTCAAGTGATTATGCCGAAACTCAC
AACCAGATGAAGCAACGTCCTGCAGTTTTAGCCCAGAAGCGTTTTAGCTC
TGCTCGAATGCATTTGTTTCCGCTTACGTGTTTCATTGAGGTCTCACGCC
CTACTCATTGCGAGCTCCACAGAAGGCGGGAAGGTCCGAGCGTGACTGAA
ACTACGTAGAAGTTTGCAATGGCGTGGTTTAGGTTCGTGTTTTACGATAG
AATGTTGCACAAGCGTAGGTGCACGGAGGGAGGGACATACTTCAGAACAG
AACAGAAGCAGGTGCCATACTAGACATGGGGATGGCGGTCTGTCGGAGAC
TACACGGCAAGTCACACGCATAACGGGCCGTCTGCATGTATTCCAACGCA
CACATACCAGCTCAGCCGGGGTCCGTGTATGCTTGTGTAAGGCGTCCTAT
TCATCCTGAACGTCAGATCTACACTGTTGCGTTTTCTGTACGAGTTCCGG
GTGCAGTGTCGGGGTTGTTTCAACTACAGTCCGTTTTTGGTATGTAGGAT
ATGCCAGAGACAACGAAGAGCCTAGGCAAACGTTTTAATACTGGTACCAC
CGAATAGATACGGCCCTGCCCGAGACATTCCTTCAAAGGTTCCCAAAGGA
AACACTTTTCAAGACACGATATTAATCGGTATCGCAACAAGGATTTACGG
CTTGAATTGCTGGGCGCCTCGGAGAATTGTCCGATCTAAAGTTTTCTTCC
AGAGCTCGTTGCCTGAGCGGTTGTTTGGACGTTCAGATAAAGGTTCGTGC
CCATGGGGGAAAAAGGGCTGTTACCTGACACCGGCACGAGATGGAGAATA
TCACCCGATCGATCCCGAGCTTAGCGGCAGAAGCGTTTTGGCTTGCGCAC
CCCGATAGTAAATCCACCAAGCACATCCGGGGCGATAGAATGCTCGGCCA
TGTAGGAAACTAACACATTTTCGTCCCAATGCGTTGACAATATAGGGCGG
TGAAATAGGTTTCTTGGAGTACTTGGAAGCCGTGGAGAGGACGCAGCTCA
ATACCTTCGTACAGTCTTCCGTTGGGCGCGCGCAGCTAGCGAAGACAGGT
ACGAAGGGGAACCAAGCGAAAGTGACTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig84:28480..33909-

>mRNA_Ecto-sp6_S_contig84.17556.1 ID=mRNA_Ecto-sp6_S_contig84.17556.1|Name=mRNA_Ecto-sp6_S_contig84.17556.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp6_S_contig84:28480..33909- (Ectocarpus species6 EcLAC_371)
ATGGCTGAGGAAGACGAAGTGATTAATATCTCACAACAGGAGGACAAGGG
TCTGAGAAGAGTGTACCATCGTCTGTGCGACTTCAGCCAAAAGGAAAAGC
TTCGGAAGGAGATCCACGCATTGCAGGCAAAGGTGGAGGCGCTTTCGGCC
GCACCACAGTCGAAGCAGGCGAAACTTGCAGCCAACGATGCGAACGTAAA
GGCAGAGGAAAACAGGCTCAACGAGGAAATTCGCGCACTGGAGCAGGAAA
TTGTCCGCCTGGAGAACAATCCAGATAAAAAGATCAAAGCCGTGGACATC
TGGGAGCACATGAAGTTTTTGGGCAAGAAGTGCACGAGGAAGGAAGTGAC
GGACATTGTTTGGGAAGTGGACGAGAACTTGGATGGCTTGGTAGACTGGG
ACGAGTTTAAGCTCATGTTCTTCCGAAACATTAACGACCACACGGGTCTC
GAACCGGCAAAGCTATACAACATGGTGCAGTTCATGCTGTACGACGTGGA
CAACAACGTCAATGTGTCCCAACTAGATAATGTCATTAGGATAGCGACCT
ACCTCTACATGGCGTATGGGCGAACCAAGATGGAAGCGAAGCTGAAGGAA
CTATTCGGGGAAGGTATGCGAGAGACGGGGACGCAGGGCGGTGAAATAGG
TTTCTTGGAGTACTTGGAAGCCGTGGAGAGGACGCAGCTCAATACCTTCG
TACAGTCTTCCGTTGGGCGCGCGCAGCTAGCGAAGACAGGTACGAAGGGG
AACCAAGCGAAAGTGACTTGA
back to top