mRNA_Ecto-sp6_S_contig83.17554.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 462 bits (1188), Expect = 1.520e-153 Identity = 463/488 (94.88%), Postives = 465/488 (95.29%), Query Frame = 1
Query: 1 MMVALSRALSVLAPLAVVQAKNSCLDPNSSDYRCGAAIVAKEQSTLSLVGCGLTDDDFDDLEVCTTVGSQLQDPSVEQLDLYNNTLSTLPGEFFQSSTSWTSLNFSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWIRDNDNLKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTTLXXXXXXXXXXXXEIDVNGNPNLECLPPAPEPTTNVIGYTGATGVCGCELSDGTSPCGQDPACSPGPEGYTCGNTSLASLAPTPSPVPVLEAQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGFEKSGACCSVGCGTCGGQ 1464
M VALSRALSVLAPLAVVQAKNSCLDPNSSDYRCGAAIVAKEQSTLSLVGCGLTDDDFDDLEVCTTVGSQLQDPSVEQLDLYNNTL+TLPGEFFQSSTSWTSLNFSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWIRDNDNLK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTT XXXXXXXXXXXXEIDVNGNPNLECLPPAPEPTT+VIGYTGATGVCGCELSDGTSPCGQDPACSPGPEGYTC AQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGFE SGACCSVGCGTCGGQ
Sbjct: 1 MRVALSRALSVLAPLAVVQAKNSCLDPNSSDYRCGAAIVAKEQSTLSLVGCGLTDDDFDDLEVCTTVGSQLQDPSVEQLDLYNNTLTTLPGEFFQSSTSWTSLNFSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWIRDNDNLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTTXXXXXXXXXXXXXEIDVNGNPNLECLPPAPEPTTDVIGYTGATGVCGCELSDGTSPCGQDPACSPGPEGYTC-------------------AQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGFENSGACCSVGCGTCGGQ 469
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE) HSP 1 Score: 414 bits (1065), Expect = 3.730e-136 Identity = 437/460 (95.00%), Postives = 444/460 (96.52%), Query Frame = 1
Query: 1 MMVALSRALSVLAPLAVVQAKNSCLDPNSSDYRCGAAIVAKEQSTLSLVGCGLTDDDFDDLEVCTTVGSQLQDPSVEQLDLYNNTLSTLPGEFFQSSTSWTSLNFSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWIRDNDNLKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTTLXXXXXXXXXXXXEIDVNGNPNLECLPPAPEPTTNVIGYTGATGVCGCELSDGTSPCGQDPACSPGPEGYTCGNTSLASLAPTPSPVPVLEAQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIMDT 1380
M ALSRALSVLA LAVVQAKNSCLDPN+SDYRCGAAIVAKEQSTLSLVGCGLTDDDFDDLEVCTTVGSQLQ+PSVEQLDLYNNTL+TLPGEFFQSSTSWTSLNFSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWIRDND+L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTTLXXXXXXXXXXX +IDVNGNPNLECLPP PE T VIGYTG T VCGCELSDGTSPCGQD ACSPGPEGYTCGNTSLASLAPTPSP PV+EAQTCSNGLAGYE SGACCSVGCGTCGGEGCSQLG+GAESCCTSNIIAA EPCSEKGAAPCIMDT
Sbjct: 1 MRAALSRALSVLASLAVVQAKNSCLDPNNSDYRCGAAIVAKEQSTLSLVGCGLTDDDFDDLEVCTTVGSQLQNPSVEQLDLYNNTLTTLPGEFFQSSTSWTSLNFSYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWIRDNDSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLTTLXXXXXXXXXXXIQIDVNGNPNLECLPPTPEAMTEVIGYTGVTDVCGCELSDGTSPCGQDLACSPGPEGYTCGNTSLASLAPTPSPAPVMEAQTCSNGLAGYEKSGACCSVGCGTCGGEGCSQLGQGAESCCTSNIIAAGEPCSEKGAAPCIMDT 460
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.000e-12 Identity = 40/74 (54.05%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 1180 VLEAQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEG--AESCCTSNIIAAREPCSEKGAAPCIMDTDQTCS 1395
V AQTC NGLAG CC++GCGTCGG GCS EG + CCTSNI + C++ GAAPCI D D S
Sbjct: 19 VTTAQTCDNGLAGVSTGVYCCTLGCGTCGGSGCSSRAEGLNGDDCCTSNIASNGILCADSGAAPCIGDVDDDVS 92
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 6.010e-12 Identity = 41/80 (51.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query: 1180 VLEAQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEG--AESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGF 1413
V AQTC NGLAG CC++GCGTCGG GCS EG + CCTSNI + C++ GAAPCI D N GF
Sbjct: 19 VATAQTCDNGLAGVSKGEYCCTLGCGTCGGSGCSSRAEGLTGDDCCTSNIASNGILCADSGAAPCIGDVGDDVPNETEGF 98
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.130e-11 Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 1180 VLEAQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAES--CCTSNIIAAREPCSEKGAAPCIMDTD 1383
V AQTC NGLAG N CC++GCGTCGG GCS EG + CCT+NI C+E GAAPCI D +
Sbjct: 4 VTTAQTCDNGLAGVSNGDYCCTLGCGTCGGPGCSTRAEGLDGNDCCTANIAQNGILCAESGAAPCIGDVE 73
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 4.240e-10 Identity = 52/133 (39.10%), Postives = 68/133 (51.13%), Query Frame = 1
Query: 1036 GATGVCGCELS------DGTSPCGQDPACSPGPEGYTCGNTS----LASLAPTPSPVPVLEAQTCSNGLAGYENSGA-CCSVGCGTCGGEGCSQLGE----GAESCCTSNIIAAREPCSEKGAAPCIMDTDQT 1389
G G GC S DG+S CG S G C T+ + +P PSP P ++TCSNG+ G + +G CC +GCG CGG GC+ G GA+SCC +I A+ E C E APCI+ + T
Sbjct: 290 GQCGGTGCNTSGAAAGLDGSSCCGGSIKAS----GKYCDETNDAPCIIGSSPAPSPTP---SETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIGSRPT 415
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 5.120e-10 Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = 1
Query: 1177 PVLEAQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIM----------DTDQTCSNGLAGFEKSG 1425
P A C +G+ G+ + ACCSV CG CGG GC L GA CC+ +++A CSE G APC++ D D T S+G A +G
Sbjct: 345 PAPSAPECDDGIEGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSESGVAPCVLGPVSQVDGAADADTTTSSGEAANRIAG 437
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 6.090e-10 Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1
Query: 1204 NGLAGYENSGA-CCSVGCGTCGGEGCSQLGE----GAESCCTSNIIAAREPCSEKGAAPCIM----DTD--------------QTCSNGLAGFEKSG-ACCSVGCGTCGG 1461
+G G + +G CC +GCG CGG+GCS G G+ESCC + + C + APCI+ DTD QTCSNG+ G + G CC + CG CGG
Sbjct: 575 DGTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDDVDSGISEESADDTQTCSNGIEGIDHKGEVCCPLACGQCGG 684
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 5.910e-7 Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 1
Query: 1195 TCSNGLAGYENSGA-CCSVGCGTCGGEGCSQLGEG----AESCCTSNIIAAREPCSEKGAAPCIMDTDQTCSNGLAGFEKSGACCSVGCGTCG 1458
TCS+G+ G + +GA CC +GCG CGG GC+ G + SCC +I ++ C + G AP D C + K CC +GCG CG
Sbjct: 81 TCSDGIEGIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNYCDDTGEAP----NDLECID-----HKGEICCPLGCGPCG 164
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 7.790e-6 Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1189 AQTCSNGLAGYENSG-ACCSVGCGTCGGEGCSQLGE----GAESCCTSNIIAAREPCSEKGAAPCIM 1374
A TCSN L G ++ G CC +GCG CGG GCS G GAESCC+S + + C + APCI+
Sbjct: 739 ATTCSNDLEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig83.17554.1 >prot_Ecto-sp6_S_contig83.17554.1 ID=prot_Ecto-sp6_S_contig83.17554.1|Name=mRNA_Ecto-sp6_S_contig83.17554.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=588bp MMVALSRALSVLAPLAVVQAKNSCLDPNSSDYRCGAAIVAKEQSTLSLVGback to top mRNA from alignment at Ecto-sp6_S_contig83:748077..758331- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig83.17554.1 ID=mRNA_Ecto-sp6_S_contig83.17554.1|Name=mRNA_Ecto-sp6_S_contig83.17554.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10255bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:748077..758331- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:748077..758331- >mRNA_Ecto-sp6_S_contig83.17554.1 ID=mRNA_Ecto-sp6_S_contig83.17554.1|Name=mRNA_Ecto-sp6_S_contig83.17554.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1764bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:748077..758331- (Ectocarpus species6 EcLAC_371)back to top |