mRNA_Ecto-sp6_S_contig83.17553.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17553.1
Unique NamemRNA_Ecto-sp6_S_contig83.17553.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig83.17553.1 vs. uniprot
Match: D7G3D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D8_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.160e-62
Identity = 103/117 (88.03%), Postives = 103/117 (88.03%), Query Frame = 1 
Query:    1 MPGTAAPQACQRCRRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFEGCCPSQDVKPQETGVADVQKASGVQEGHDIPRRKRHPRRTGGRSRRGRKAGRGGGRPKQEATGSQKT 351
            MPGTAA QACQRCRRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFEGCCPSQDVKPQETGVADVQKASGVQEGHDIPRRKRHP             GRGGGRPKQEATGSQKT
Sbjct:    1 MPGTAASQACQRCRRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFEGCCPSQDVKPQETGVADVQKASGVQEGHDIPRRKRHPXXXXXXXXXXXXXGRGGGRPKQEATGSQKT 117
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BLAST of mRNA_Ecto-sp6_S_contig83.17553.1 vs. uniprot
Match: D7G4G3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G3_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.780e-8
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:  259 PRRTGGRSRRGRKAGRGGGRPKQEATGSQKT 351
            PRR GGRSRRGRKAGRGGGRPKQEATGSQKT
Sbjct:    2 PRRRGGRSRRGRKAGRGGGRPKQEATGSQKT 32
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BLAST of mRNA_Ecto-sp6_S_contig83.17553.1 vs. uniprot
Match: D7FKZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ8_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 3.660e-7
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:  262 RRTGGRSRRGRKAGRGGGRPKQEATGSQKT 351
            RR GGRSRRGRKAGRGGGRPKQEATGSQKT
Sbjct:   12 RRRGGRSRRGRKAGRGGGRPKQEATGSQKT 41
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BLAST of mRNA_Ecto-sp6_S_contig83.17553.1 vs. uniprot
Match: D7FU68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU68_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 2.730e-6
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:  265 RTGGRSRRGRKAGRGGGRPKQEATGSQKT 351
            R GGRSRRGRKAGRGGGRPKQEATGSQKT
Sbjct:   56 RRGGRSRRGRKAGRGGGRPKQEATGSQKT 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3D8_ECTSI1.160e-6288.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4G3_ECTSI2.780e-896.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKZ8_ECTSI3.660e-796.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU68_ECTSI2.730e-696.55Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:711502..713468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_006510.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350468.0854774-CDS-Ecto-sp6_S_contig83:711501..7115361682350468.0854774-CDS-Ecto-sp6_S_contig83:711501..711536Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 711502..711536 +
1682350468.0953958-CDS-Ecto-sp6_S_contig83:711729..7119571682350468.0953958-CDS-Ecto-sp6_S_contig83:711729..711957Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 711730..711957 +
1682350468.1053438-CDS-Ecto-sp6_S_contig83:713377..7134681682350468.1053438-CDS-Ecto-sp6_S_contig83:713377..713468Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 713378..713468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17553.1prot_Ecto-sp6_S_contig83.17553.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 711502..713468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17553.1

>prot_Ecto-sp6_S_contig83.17553.1 ID=prot_Ecto-sp6_S_contig83.17553.1|Name=mRNA_Ecto-sp6_S_contig83.17553.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
MPGTAAPQACQRCRRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFE
GCCPSQDVKPQETGVADVQKASGVQEGHDIPRRKRHPRRTGGRSRRGRKA
GRGGGRPKQEATGSQKT*
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mRNA from alignment at Ecto-sp6_S_contig83:711502..713468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17553.1 ID=mRNA_Ecto-sp6_S_contig83.17553.1|Name=mRNA_Ecto-sp6_S_contig83.17553.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1967bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:711502..713468+ (Ectocarpus species6 EcLAC_371)
ATGCCAGGCACTGCAGCACCACAGGCTTGTCAAAGGTGAGGTGCAGAGAA
TTGCATAACGCCGCTGATGGGCGTAGTTTGTGATTGTCGTACGGTGCACT
GTATTAGGATCGACTTTGTTGTTTCGCAATTCGCAATTTGGTCGAGCCCA
AAATATGAACTCGGCTGTCTGCTGTTTTAAACGTTTCGAGTGAAACCATT
TGATTGCCCCTCTCGACGCTTTGCTTAGATGTCGTCGAGCGAGCGAGCCG
CTCGAGCGAGAGCGAACAGGCGCGAACTCTCAACTACAAGTACACGACAA
TGAACCAGATCGAGGGCCGAGCGCGGAAATTGTCTGCTTCGAGGGATGCT
GCCCGTCTCAAGATGTTAAACCTCAGGAGACTGGCGTCGCGGATGTGCAG
AAAGCTTCAGGAGTACAAGAAGGTCATGATATTCCTCGGCGAAAACGACA
TCCCAGGTGTGCGGTGGGTGTTGGGACAGGCGCTGAAGGATGGCAAGTCG
CCCATCGCGATGTTGGGAACGCTCGAGGCCGCGTTTGAAGGGAAATATCG
AGCACGCGGCCACACTGAAGACGACTTGGATTTGGCCATCCTCGTGCTGC
GCGTTGGAGGTCCCTCTCTGCTATTCTCCTTGTCCCAGGCGCTTTGTCTG
CCAAGCGTCAGCAGCGTCTACGTTGAGATGAAGAAGCGCTATGTGAGTGA
GACTGGGGGCTGCAGAGTGGTAGTGCACGTGTGGGGCGTATCCCAGAACG
TGGCGCCGGTCGGTGGCAGGGCATGTTCGACTTGTATAATTTATCCCAAA
GACCTCTTCCATTAGTGATAGTTCATTTGTCTCTCAATATCTGTGTGCCC
CATGAACCCGTCGGTCGTTTACCGGGAAGGTAAACTAAAAAGAACGCGAT
CACGCAAGTCGGATCACAAGCAATACTAATAACCGCGCAATTTCCGCTAT
CCCGATCCGGTCTTGGGTGGTGCCCGGCAGATGTCGTTTGCACCGTGTGC
ATCGCTACAGTACGAAATCCTGGAGCCGGCGGTGATAGCCAACCTCCTAG
CGGTGGTAGAAGTGTACCGCGGGAAGACCTGCCTATTCCAGGCCCAAGTG
GACGAGATCGCCCAGGAGAAACGCGCAAGACACTACCAGAACAACGATAC
CAGCGGCACGCTCACGATCCATCCTCTCTCCCTTTTTGTTGTAGGCTTTG
CAAGTGAGCACTGTCTGTGGCTTCTGTGGTGAGGTCGGGTGCCGCAGCAC
CATCCATGATCCACCAGGCAAGGCCAGGCCCCTGGTGCACTCGACCTGTC
CATCAGCGCCTCGGAGCGACGCACGCCAGGAAGCCGTAGCTCTGAACCTG
GGCAGTGCGAAGGCGGGCTCAGATACCTCACCGTGCACCAACATGGTCTT
GAAGTGCCTCTTCTGCTCCCAGGACACCTACATCTGGAAGTATGGCATGT
CCGAACACGTCACAAGATGCCACCGGGAGGACATACTTGTGGCGGCGGGT
ACGACGGTAGATAGGTTCAAGGAAGCCTACACTATCTCGGAGAGCGAGAA
GGCCAAGGTACTCCAAAAATTTAAAGCCGGGAGGCCTCGCCGACGTGGTC
AAGGAAACGAAGCCCTCCCCACTGGCGCACTTGGGAGCACGGAAGGGAAC
GGCACTTTCGGCCGTAACATGTCCGGCACCCGGTCCTTGGAGGACATGGG
CGAGGAGGAAGAGGAAGAGGAGGAGGACGAGGAACAAGACGACGACGACG
ACGACGACGACGACGACGACGACGACGACGACGACGACGACGACGACGAC
GACGACGACGAAGACGAAGACGACGACGGCGACGGCGACGACGAAGACGA
CGACGACGAAGACGACGACGACGAAGACGAACAGGAGGAAGAAGTAGAAG
AGGAAGAAAGGCGGGCAGAGGGGGTGGAAGGCCAAAGCAAGAAGCGACCG
GCTCGCAGAAAACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:711502..713468+

>mRNA_Ecto-sp6_S_contig83.17553.1 ID=mRNA_Ecto-sp6_S_contig83.17553.1|Name=mRNA_Ecto-sp6_S_contig83.17553.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:711502..713468+ (Ectocarpus species6 EcLAC_371)
ATGCCAGGCACTGCAGCACCACAGGCTTGTCAAAGATGTCGTCGAGCGAG
CGAGCCGCTCGAGCGAGAGCGAACAGGCGCGAACTCTCAACTACAAGTAC
ACGACAATGAACCAGATCGAGGGCCGAGCGCGGAAATTGTCTGCTTCGAG
GGATGCTGCCCGTCTCAAGATGTTAAACCTCAGGAGACTGGCGTCGCGGA
TGTGCAGAAAGCTTCAGGAGTACAAGAAGGTCATGATATTCCTCGGCGAA
AACGACATCCCAGACGAACAGGAGGAAGAAGTAGAAGAGGAAGAAAGGCG
GGCAGAGGGGGTGGAAGGCCAAAGCAAGAAGCGACCGGCTCGCAGAAAAC
GTAG
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