mRNA_Ecto-sp6_S_contig83.17552.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17552.1
Unique NamemRNA_Ecto-sp6_S_contig83.17552.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig83.17552.1 vs. uniprot
Match: A0A6H5JQS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.400e-22
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = -2 
Query:  623 VVLLDLGFWRRRREFSCRSSCPTLHHLFVVLGLTGHQREVAILAPPRSTTHNSFGRKVSPKK 808
            VVLLDLG WRRRR+FSCRSSCP LHH FVVLGLT  QREVA+ APPRSTTHNSF  +  P K
Sbjct:   73 VVLLDLGLWRRRRDFSCRSSCPPLHHSFVVLGLTADQREVAMFAPPRSTTHNSFRSEREPNK 134
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BLAST of mRNA_Ecto-sp6_S_contig83.17552.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.880e-22
Identity = 84/199 (42.21%), Postives = 101/199 (50.75%), Query Frame = -1 
Query:  570 VEVFDPTGGEYSLDFDSFALE*SKAVSLMEESKSKVISIFLETARLQGAAH*KRECRSLRHHEHVNTRITLQPARGQDASIRRHHRRPFWCG-----LA*PWILEASEGV*LPEQLPYTPPFV--------------------RGSGAHGAST-RSCNIGTPAKHYPQQFWSES*PKKVPCQI---LHHVTVKPSQRNA 1079
            +E  DP G +  LDFDSFALE +KAVSLMEE KS VI IF +TA      H K   ++  HHE VN R TL+PARG+DA IR H R P   G     LA PWILEA EG  +PEQL                           R    H         IG   K++PQ F S + PKK  C +   L  + V+P+Q+NA
Sbjct: 1029 LEFVDPAGRQTLLDFDSFALEWNKAVSLMEEGKSAVIPIFRKTA-----GHLKAYWKA--HHEQVNMRDTLRPARGRDAPIREHLRAPGDVGGPAGGLAQPWILEAPEGFQMPEQLXXXXXXXXXXXXXXXXXXXXXXXXXKPRRKPQHCVECGHKMRIGVFKKYHPQ-FLSAAQPKK--CTVPEGLRRLAVRPTQQNA 1217
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BLAST of mRNA_Ecto-sp6_S_contig83.17552.1 vs. uniprot
Match: D7FNE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.380e-11
Identity = 37/46 (80.43%), Postives = 37/46 (80.43%), Query Frame = -1 
Query:  936 VFDPTGGEYSLDFDSFALE*SKAVSLMEESKSKVISIFLETARLQG 1073
            VF P G EYSLD DSFALE  KAVS MEESKSKVI IFLETAR QG
Sbjct:    3 VFRPAGREYSLDLDSFALEWRKAVSRMEESKSKVIPIFLETARRQG 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQS9_9PHAE1.400e-2277.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE2.880e-2242.213'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7FNE4_ECTSI1.380e-1180.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:667410..668729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1157
Hectar predicted targeting categoryother localisation
Exons2
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350461.1828227-UTR-Ecto-sp6_S_contig83:667409..6676441682350461.1828227-UTR-Ecto-sp6_S_contig83:667409..667644Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 667410..667644 +
1682350461.2041345-UTR-Ecto-sp6_S_contig83:668247..6683111682350461.2041345-UTR-Ecto-sp6_S_contig83:668247..668311Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 668248..668311 +
1682350461.2153068-UTR-Ecto-sp6_S_contig83:668474..6687291682350461.2153068-UTR-Ecto-sp6_S_contig83:668474..668729Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 668475..668729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350461.1931372-CDS-Ecto-sp6_S_contig83:667644..6682471682350461.1931372-CDS-Ecto-sp6_S_contig83:667644..668247Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 667645..668247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17552.1prot_Ecto-sp6_S_contig83.17552.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 667645..668247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17552.1

>prot_Ecto-sp6_S_contig83.17552.1 ID=prot_Ecto-sp6_S_contig83.17552.1|Name=mRNA_Ecto-sp6_S_contig83.17552.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=201bp
MPNILQQRNQRSPVIKADITPGSSTKGLQLKFLPRPSHPTPHTFRITLCH
TCPALPNCSRVLGTDISTHDPLNPPTRRLSVRSIRIVAVKRGKKIATPVC
YLPIHTARYPYLHFAATVSRSHGARSGTVLFWANFPTKTVVGSASRGCQY
CNFSLMPREPQNHEQMVECRAAAPATKLPPTPPESKVKQDHTRKAFDGAS
*
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mRNA from alignment at Ecto-sp6_S_contig83:667410..668729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17552.1 ID=mRNA_Ecto-sp6_S_contig83.17552.1|Name=mRNA_Ecto-sp6_S_contig83.17552.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1320bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:667410..668729+ (Ectocarpus species6 EcLAC_371)
GGTCGCAAGCCAACTGCCCAAAAAGGGTGCACAATTCTCAATCACCGAAA
GCAGAAAAACAAGGGGTCCCTGAAATCACAAAAAAACAGCGAAAATAAAA
GAGCACACAAAAGCGTGAAGACATCAAAACGTCCCAGGCAAACACTAGTC
GGCCATCGCTGGTGACCAAACGGGGATAAAGGAGATATACAAATAAACGC
ATGGTCCAAAGCTCATATCTTCCGCTCGGCACGCGATGCCAAACATACTT
CAACAAAGAAATCAAAGATCCCCAGTAATTAAGGCAGACATCACGCCGGG
CAGCTCGACGAAGGGGCTTCAACTAAAATTCCTGCCACGTCCGTCACATC
CAACCCCCCACACATTTCGTATAACGCTCTGCCATACCTGTCCTGCTCTC
CCCAACTGCAGTCGTGTTCTCGGAACGGATATATCTACGCATGATCCCCT
TAATCCCCCCACACGCCGGTTGTCGGTTCGGTCTATCCGCATCGTCGCCG
TTAAAAGGGGTAAAAAAATAGCAACTCCGGTCTGCTACTTGCCGATTCAC
ACCGCTAGGTATCCTTACTTGCATTTCGCTGCGACGGTTTCACGGTCACA
TGGTGCAAGATCTGGCACGGTACTTTTTTGGGCTAACTTTCCGACCAAAA
CTGTTGTGGGTAGTGCTTCGCGGGGGTGCCAATATTGCAACTTCTCGTTG
ATGCCCCGTGAGCCCCAGAACCACGAACAAATGGTGGAGTGTAGGGCAGC
TGCTCCGGCAACTAAACTCCCTCCGACGCCTCCAGAATCCAAGGTCAAGC
AAGACCACACCAGAAAGGCCTTCGATGGTGCCTCCTGATGGAGGCGTCTT
GACCCCGGGCAGGTTGTAACGTGATTCTCGTGTTCACGTGCTCGTGGTGC
CTGTCAACGTCACCGGTACATCGGCATGGAAGGCACGTATGACCATAAAA
GCAAGAGGCATACCTCGCGAGAGACTACTTCGGGACACCACTTCGCAAGC
TGGTCACGGTGAAAATATTAGCGTTCACTGATCTAAGAAAAAAACATGAT
AACATGTTCGACAAGAAGGGAGCGGCACTCACGTTTTCAGTGCGCTGCCC
CCTGGAGTCTGGCCGTCTCCAGGAAGATGGAAATCACTTTGCTCTTGCTC
TCCTCCATGAGCGACACGGCCTTGCTCTATTCCAATGCAAAGCTGTCAAA
GTCTAGCGAATACTCCCCCCCCGTCGGGTCGAAAACCTCAACCACAGTAG
TCACCGAAGTTTGATTTTTCAGCAGCTGCTCACCGGCATGTGCGGCACGT
GCCCTTGAATTTTTCTAGCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:667410..668729+

>mRNA_Ecto-sp6_S_contig83.17552.1 ID=mRNA_Ecto-sp6_S_contig83.17552.1|Name=mRNA_Ecto-sp6_S_contig83.17552.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:667410..668729+ (Ectocarpus species6 EcLAC_371)
ATGCCAAACATACTTCAACAAAGAAATCAAAGATCCCCAGTAATTAAGGC
AGACATCACGCCGGGCAGCTCGACGAAGGGGCTTCAACTAAAATTCCTGC
CACGTCCGTCACATCCAACCCCCCACACATTTCGTATAACGCTCTGCCAT
ACCTGTCCTGCTCTCCCCAACTGCAGTCGTGTTCTCGGAACGGATATATC
TACGCATGATCCCCTTAATCCCCCCACACGCCGGTTGTCGGTTCGGTCTA
TCCGCATCGTCGCCGTTAAAAGGGGTAAAAAAATAGCAACTCCGGTCTGC
TACTTGCCGATTCACACCGCTAGGTATCCTTACTTGCATTTCGCTGCGAC
GGTTTCACGGTCACATGGTGCAAGATCTGGCACGGTACTTTTTTGGGCTA
ACTTTCCGACCAAAACTGTTGTGGGTAGTGCTTCGCGGGGGTGCCAATAT
TGCAACTTCTCGTTGATGCCCCGTGAGCCCCAGAACCACGAACAAATGGT
GGAGTGTAGGGCAGCTGCTCCGGCAACTAAACTCCCTCCGACGCCTCCAG
AATCCAAGGTCAAGCAAGACCACACCAGAAAGGCCTTCGATGGTGCCTCC
TGA
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