mRNA_Ecto-sp6_S_contig83.17551.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17551.1
Unique NamemRNA_Ecto-sp6_S_contig83.17551.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: D7G270_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G270_ECTSI)

HSP 1 Score: 475 bits (1223), Expect = 2.590e-166
Identity = 245/254 (96.46%), Postives = 246/254 (96.85%), Query Frame = 1
Query:    1 MALRVVVGLLLVVLVTEEISAFVTVPTRTARRGQYPKHAGKHPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGMDKRGDAAAEESDGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTR 762
            MALRVVVGLLLVV VTEEISAFVTVPTRTARRGQYP HAGKHPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGMDKRGDAAAEESDGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKV YEEMIFFDDWDQNCKDVGKLGVTCVECRR +S   W R
Sbjct:    1 MALRVVVGLLLVVFVTEEISAFVTVPTRTARRGQYPNHAGKHPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGMDKRGDAAAEESDGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVSYEEMIFFDDWDQNCKDVGKLGVTCVECRRVVST-FWRR 253          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A0A6H5JAJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAJ8_9PHAE)

HSP 1 Score: 470 bits (1209), Expect = 3.480e-164
Identity = 244/268 (91.04%), Postives = 251/268 (93.66%), Query Frame = 1
Query:    1 MALRVVVGLLLVVLVTEEISAFVTVPTRTARRGQYPKHAGK-HPTTNGLRMMMGKKGGARSKKKRGRGGIGDVGVEDEAVGMDKRGDAAAEESDGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAATKESLR 801
            MALRV+VG+LLVV VTEE SAFVTVPTR         HAGK HPTTNGLRMMMGKKGGA+SKKKRGRGGI DVGVE+EA+GMDK+G AAAEESDG VPRLVVMDLDYTLWKPELYQMRGAPFTK+KDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGL REVWTRGLAKFAA KESLR
Sbjct:    1 MALRVIVGILLVVFVTEEFSAFVTVPTRIT-------HAGKQHPTTNGLRMMMGKKGGAQSKKKRGRGGIEDVGVENEAIGMDKKGGAAAEESDGIVPRLVVMDLDYTLWKPELYQMRGAPFTKEKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLIREVWTRGLAKFAAAKESLR 261          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A0A7S2V3W0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3W0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 9.260e-50
Identity = 83/181 (45.86%), Postives = 121/181 (66.85%), Query Frame = 1
Query:  262 AAEESDGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAATKESLRP 804
            A+ +++ +VP+LVV DLDYT+W PE+YQ+ GAPF +K+ GKV DRSG  + LF  VR  L  +     F  TK+A ASRT +  WA +VM L+ ++  L M  VF F EIY G+K  HF  + ++S++ +++M+FFDDW+ NC+DV +LGVT +EC +G++ +V+   L KF A   S  P
Sbjct:   57 ASMDAETAVPKLVVFDLDYTMWNPEMYQLYGAPF-EKRGGKVYDRSGTEVKLFRDVRSILRRIRTSEEFSSTKIASASRTEYPEWAYEVMSLMPVDDNLTMADVFEFNEIYPGTKTAHFRRLHQDSQIAFKDMVFFDDWNGNCRDVARLGVTTMECPQGMTMKVFDACLQKFQAAVNSKVP 236          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A0A836CCC3_9STRA (Acid phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC3_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.840e-48
Identity = 86/177 (48.59%), Postives = 115/177 (64.97%), Query Frame = 1
Query:  262 AAEESDGSVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAATKE 792
            A  E    VPRLVV DLD T W PE++Q++GAPF +   G+V DR G  + L P VR  L E++       T++A ASRT+   W+RQVM L  +  GLLM  +F F EI  G K  HF E+   SKVPY+EM+FFDDW++N KDV  LGVTC+ C  GL++++W +GL K+A+ K+
Sbjct:  122 ALAEIPNVVPRLVVFDLDKTCWLPEMFQLKGAPF-RVAAGRVLDREGTEVALRPDVRNVLEELYTHPGLSSTRIACASRTNRGNWSRQVMELFVVFDGLLMSELFDFVEIQPGDKTAHFDELTTLSKVPYDEMLFFDDWERNIKDVSPLGVTCIHCPEGLTKQLWRQGLQKYASRKQ 297          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A0A6S9KH66_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KH66_HETAK)

HSP 1 Score: 167 bits (422), Expect = 1.290e-46
Identity = 78/166 (46.99%), Postives = 110/166 (66.27%), Query Frame = 1
Query:  283 SVPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFA 780
            +VP+L+V DLD+T+W PE+YQ+ GAPF+ + +GKV DR    +DLFP VR  L  +H    F +TK+  ASRT +  WA + M LI++  G+ MR  F+F EIY G+K +HF +++++S+V YE+M+FFDD   NC+DV  LGVT   C  GLS   +   L  FA
Sbjct:    2 AVPKLIVFDLDFTMWDPEMYQLDGAPFSYR-NGKVYDRRNTEVDLFPDVRNILQRIHFSEEFAETKIGSASRTEYPEWAYECMSLIDVCDGMKMREFFTFNEIYPGTKTKHFRKLQKDSQVDYEDMLFFDDCSWNCRDVSALGVTAFNCPNGLSEREFNEALDIFA 166          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A0A5J4YXB8_PORPP (Magnesium-dependent phosphatase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXB8_PORPP)

HSP 1 Score: 157 bits (397), Expect = 7.070e-42
Identity = 78/179 (43.58%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  250 RGDAAAEESDGSVPRLVVMDLDYTLWKPELYQM--RGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFA 780
            +G  AA  +  +VPRL+V DLD TLW+PE+Y++   GAPF   KDG V DRSG  + L    R  LLE+    R++DT++A+ASRT    WA + M  I +  G+ M+S     EIY G+KV HF  +   + +PY++MIF+D+   NC DVG LGV C+   RG++  +W + L +FA
Sbjct:   70 KGAMAAGATRVTVPRLLVFDLDGTLWRPEMYELWGGGAPFKPNKDGNVVDRSGTEVRLLGNSRSLLLELRTDERWKDTQVAVASRTDEPTWAEECMQKIMIADGMNMKSTIDIEEIYKGNKVHHFRALHEKTGIPYDQMIFYDNETANCHDVGTLGVLCIFTPRGMTDGIWQQSLEQFA 248          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A8J7X6_CHLRE (Predicted protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8J7X6_CHLRE)

HSP 1 Score: 143 bits (361), Expect = 1.620e-37
Identity = 72/175 (41.14%), Postives = 105/175 (60.00%), Query Frame = 1
Query:  286 VPRLVVMDLDYTLWKPELYQMRG-APFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEP----GLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAATKES 795
            +P+L+  DLD TLW PE+Y + G APF + K G V D+  E I+L     E L E+    +++DT++A  SRT +  WA   +    + P    G  +  + ++ EIY GSK+ HF +I ++S VPYE+M+FFD+   NC +  +LG+ CV   RGL+RE W RGLA FA  + S
Sbjct:    4 IPKLIAFDLDGTLWWPEMYMLDGGAPFRRDKSGAVFDKRNERIELMGASEEVLRELATDPKWKDTEIAYVSRTEYPEWAIPCLKTFLVTPEGQGGRNLLDISAYQEIYPGSKITHFKKIHKDSAVPYEDMLFFDNEKWNCTECSRLGIVCVYTPRGLTREAWDRGLADFATAQAS 178          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A0A7S2PH52_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PH52_9STRA)

HSP 1 Score: 140 bits (354), Expect = 1.670e-36
Identity = 68/166 (40.96%), Postives = 106/166 (63.86%), Query Frame = 1
Query:  289 PRLVVMDLDYTLWKPELYQMRGAPFTK-KKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEP-GLLMRSVFSFTE-IYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKF 777
            P+LVV DLD+T+W PE+Y++ GAPF K  + G+V DR  E + +F  + E    +H    F +TK+A+AS T++  WAR+ M L+ ++   + + +V  + + IY  +K  HF E+R  S + +++M+FFD+   N ++VG+LGVTCV C  G+S E W RGL  F
Sbjct:    7 PKLVVFDLDFTVWYPEMYELEGAPFKKCSRTGRVTDRDNEEVQIFDDMHEIFKALHTSDEFENTKVAVASSTTYPEWARECMRLLHVQDIDVALETVIHYRQAIYPRNKKVHFNELREASGIDFKDMLFFDNERYNIREVGELGVTCVYCPDGMSMEHWERGLDAF 172          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: C1MN59_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MN59_MICPC)

HSP 1 Score: 140 bits (354), Expect = 2.600e-35
Identity = 75/182 (41.21%), Postives = 106/182 (58.24%), Query Frame = 1
Query:  286 VPRLVVMDLDYTLWKPELYQMRGAPFTKKKDG-----KVRDRSGEVIDLFPGVREAL--LEVHRGHRFRDTKLAIASRTSHERWARQVMGLIELEPG-------LLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAATK 789
            +P LV  DLD T+W PELY MRGAP+TK++       +V D SGE +  +P    A+  L  H     R TK+A+ASRT+   WA +VMG+  ++ G        +   V    E+YSG+K RHF +++  + +PY +M+FFD+ +QN +DV  LGVTCV C  G++   W  GL  FA  K
Sbjct:   86 LPALVCFDLDDTIWFPELYMMRGAPWTKERCDTTGRERVMDASGEELRCYPAATAAMAMLRSHAAFAKRGTKIAVASRTNRGAWADEVMGMFVVDDGSGSGTTTTMRECVGDLVEMYSGTKKRHFEKLKARTGIPYADMLFFDNEEQNTRDVATLGVTCVLCVGGMTERAWEDGLRAFAEKK 267          
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Match: A0A1W0A7X6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7X6_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.030e-35
Identity = 69/183 (37.70%), Postives = 106/183 (57.92%), Query Frame = 1
Query:  286 VPRLVVMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEVHRGHRFRDTKLAIASRTSHERWARQVMGLIEL------------EPGLLMRSVFSFTEIYSGSKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSREVWTRGLAKFAATKESL 798
            +P+L+V DLD+TLW PE+Y++ GAPF + K G V  R GE + LF      L E+     FR+T++A+AS T++  WAR+ M LI++            +   ++ +   +  IY  +K  HF ++   S VPYE+M+FFD+   N  +V +LGV C  C  GLS +VW  G+ +F + KE+ 
Sbjct:   10 IPKLIVFDLDFTLWYPEMYELVGAPFRRNKHGVVSARDGEEVHLFDDAHAVLTEIASLPEFRETQVAVASSTTYPHWARECMSLIQVRNAEMPKKNKKTKEAKVLNAFIDYQAIYPKNKKVHFKQLHEESGVPYEDMLFFDNEHYNIVNVQQLGVVCAYCPDGLSYQVWREGMDRFQS-KEAF 191          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G270_ECTSI2.590e-16696.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAJ8_9PHAE3.480e-16491.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V3W0_9STRA9.260e-5045.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CCC3_9STRA3.840e-4848.59Acid phosphatase-domain-containing protein n=1 Tax... [more]
A0A6S9KH66_HETAK1.290e-4646.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4YXB8_PORPP7.070e-4243.58Magnesium-dependent phosphatase 1 n=1 Tax=Porphyri... [more]
A8J7X6_CHLRE1.620e-3741.14Predicted protein n=3 Tax=Chlamydomonas TaxID=3052... [more]
A0A7S2PH52_9STRA1.670e-3640.96Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
C1MN59_MICPC2.600e-3541.21Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A1W0A7X6_9STRA4.030e-3537.70Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:650432..656285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score481.1
Seed ortholog evalue3.4e-133
Seed eggNOG ortholog2880.D7G270
Model size1222
KEGG koko:K17619
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003993,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0030946,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons5
EggNOG free text desc.fructosamine metabolic process
EggNOG OGsKOG4549@1,KOG4549@2759
EC3.1.3.48
Cds size807
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17551.1prot_Ecto-sp6_S_contig83.17551.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 650432..655870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350468.0079122-CDS-Ecto-sp6_S_contig83:650431..6507571682350468.0079122-CDS-Ecto-sp6_S_contig83:650431..650757Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 650432..650757 +
1682350468.018903-CDS-Ecto-sp6_S_contig83:651659..6518451682350468.018903-CDS-Ecto-sp6_S_contig83:651659..651845Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 651660..651845 +
1682350468.0283022-CDS-Ecto-sp6_S_contig83:653471..6535651682350468.0283022-CDS-Ecto-sp6_S_contig83:653471..653565Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 653472..653565 +
1682350468.0380313-CDS-Ecto-sp6_S_contig83:654606..6547351682350468.0380313-CDS-Ecto-sp6_S_contig83:654606..654735Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 654607..654735 +
1682350468.0474472-CDS-Ecto-sp6_S_contig83:655798..6558701682350468.0474472-CDS-Ecto-sp6_S_contig83:655798..655870Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 655799..655870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350468.057225-UTR-Ecto-sp6_S_contig83:655870..6562851682350468.057225-UTR-Ecto-sp6_S_contig83:655870..656285Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 655871..656285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17551.1

>prot_Ecto-sp6_S_contig83.17551.1 ID=prot_Ecto-sp6_S_contig83.17551.1|Name=mRNA_Ecto-sp6_S_contig83.17551.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=269bp
MALRVVVGLLLVVLVTEEISAFVTVPTRTARRGQYPKHAGKHPTTNGLRM
MMGKKGGARSKKKRGRGGIGDVGVEDEAVGMDKRGDAAAEESDGSVPRLV
VMDLDYTLWKPELYQMRGAPFTKKKDGKVRDRSGEVIDLFPGVREALLEV
HRGHRFRDTKLAIASRTSHERWARQVMGLIELEPGLLMRSVFSFTEIYSG
SKVRHFGEIRRNSKVPYEEMIFFDDWDQNCKDVGKLGVTCVECRRGLSRE
VWTRGLAKFAATKESLRP*
back to top

mRNA from alignment at Ecto-sp6_S_contig83:650432..656285+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17551.1 ID=mRNA_Ecto-sp6_S_contig83.17551.1|Name=mRNA_Ecto-sp6_S_contig83.17551.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5854bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:650432..656285+ (Ectocarpus species6 EcLAC_371)
ATGGCTCTGAGAGTGGTTGTGGGGCTACTTTTGGTGGTGTTAGTTACGGA AGAAATCAGCGCGTTCGTTACCGTTCCCACGAGAACAGCTCGAAGAGGGC AGTATCCGAAACACGCAGGAAAACACCCCACGACCAACGGGCTGCGCATG ATGATGGGCAAGAAGGGAGGGGCTCGTTCGAAGAAGAAGCGAGGGCGAGG CGGGATCGGAGATGTCGGCGTGGAGGACGAGGCTGTTGGTATGGATAAGA GGGGGGACGCTGCGGCAGAAGAGAGCGATGGGAGTGTGCCTCGCCTGGTT GTTATGGACCTTGACTACACGTTGTGGTGAGACAGAGCTTGAACACGCAC AACTTGCCGACCTTGCTTACGTATGTACGCGCTGAAGCAGTCACCAATTG GCTTCGGCCTCGGTGCCAAAACCTAGCGACGACGGTGCCATGGTCAAAAA CGCTGCTGGGTGGCACATACCCTTCACCGACAGCAGCAGCATGGACAGCG AGCCTTGACCTCGCTCCACACACCAGTTTCCTGGAAACCGTTACGCGCTA CAAAACTGCCGCGTTGCACGCAACGGGAGGATCCTGATGCTGGGCTGCTG GCACATCCTCAAATGCAATTAAACGACAGCAGCAGTTCGCTGTGCCTGTA GACAGCTGTTATACTGCAGCAAACGGCACATGCTTCGTTCGAGTGGGTGT TACGCGTAGTCCACGTTCGACCGGCAGTCCCTGCGTTTGGAAGTATACGG TCAGTAGATTGGCAACAGCCGTTTCGCTTTTTTCAGCCCGTCGCCTTCAC GTACACATGCCAAGGAAATTGATGAATACGGGATCGGTGAACATGGTTTT CGCCGTTTGCACGCCATTCAGTACAGTATCACCCCCTGTCCATGAACAAC TACATGCAGTTTGTTATGGGCATAGAAGCCTGAGCTGAACGCGTAACGAA GGAAGGGGATGAATTTTACATAATCGGTACATAGCAGGTGGCGAAAGCGA GCAAAGGAAGCCTCACCAGCATCACCTGAGTTGCGCTTTCGCCACCGCGC CCGTGCCACCGCGGCCAAGCGTCGTCCTCTTCCATTCACTAGGGCGTGCG ACCCAGGCTTCCTGTAGCTTCCGGCTTCATTGGCGACGAGGATGTATGAG ACACCACCACATTGACGTAAATGCATATCACCGACGAGGATAAAACAGTA GCAGTGAACCCACGGCGACTGACTGCAGGAAGCCGGAGCTGTACCAGATG AGGGGGGCGCCCTTCACCAAGAAGAAGGACGGCAAGGTAAGGGATCGCTC GGGCGAGGTGATCGACCTCTTCCCCGGCGTTCGAGAAGCGCTGCTGGAGG TGCACAGGGGGCATCGCTTCAGGGACACCAAGCTGGCCATCGCTTCGAGG ACGTCGCACGAAAGGTGTTTTGAAAGATTTCGAAAATTGTGCTGTTGTTC TGTTCTACACGGATGCAAGCGTGGGGCATTGTACAGTCACGTCTGCGGCT GTGGAGAGGGTAGTGTTGAGCACCGGTGACCTTCTTTAATGAGGCATACT TCTTTTGCTGGAAGAGAGAGAGGAGTATATCCATTCAATCTGCACGAGAT GCCCCTGTATTGCGTCGACCGTCTGGGTGAGAACGGCTTTATCCTTTGAA GCCACAACCCCACACAGAGACGTTTTTTGTTGTTAGGGCCCCCAGAACGC ATGGAAGCTGAAAATATCGTGTTGGCAGCCACACCTATTCGTTTGGTGTT TTAGGCGCGGCATGATCGATGCTGCTGTTGGTATACGCATTGCCATACCG CCCACACCGCCGCGATCAAATTCTGCGCATTGATACGCTGGTGTTATCCA ACAAGAATCAAGAATCATTGTGGCCATCGGCCTAGCAACTGATCCCGCTT GGATAAAAAACACTTGGCCTGATATATCTGCAACGACAAACGCCGCGCAC GTGGACAACGGAATCCGATGAACGATTGGTCCATAGTATAGCAAGGCCGG TGCAAGCCCAAAGGTGAATACACCCCCGGTCTATATAATAGTAGGACGCG ACGTTGCAAGTTTCTTCTCTTGGTGATGTTAACGTTGTTGTTGGTTTCGC TTTATTCTAGTTGGTTGGGTTCGCGCGTGGAGTGGGAGCGGTGGGTTTAT GTGAAGAAAAAAAAGCATTGATTGGGAGATTGCGTGATAACCAAACCCAT CTGCGATACTGCGGGAATGTGTGATGAACGTTTTCATCGCTTCCGTCGCC CCGGCTCGGTTGGCGCGGATATCCTTAAGCTACGTGATACCTCGGCCATG CATCACTATTCACCGATTATCCGAGCACCTGGTTCGGTATTCTTTCAAAA TCATGCCAAGGATATAGGTAGCTCCGTTGCATTTGTATTGATTTTCACTC GGGTTGTGTCGGTCTTGTTTCGGCCGTACCCTTCTTTTGTTTTCTCGCGA ATGGCGGAGCTCTAGAACAGATCTTCAATTAGTTGTGCCCCGGTTCAGGT TTTGGCTCGCGACCACGGAAACTTGGTTGTTGGCCGCGGACAGAGATGGA CAAAACCAGCGGTCGACGGGAACACAACACCAATAATAACAAGGGCTGCC AGAGTGAGCTTTCGTTCGGATGCACAGAATGCTTGACTCCACACGGGTAG TATGTGCCGTGTACGAGTATGTGAAGCAGCGGAGGCGTCTCGGGTCTTTG CTTCGAACCAGTAGCGTTCGAGCGGGAAGAGGGGCTTGGTCTCATCCAAA GTGTTCGCGAGGCACGCTGGTCTGCGGCGACCATCACTGGAACCAGCCCC CAGTCGTGGCTTCTGTCGATGGTTTCATGCACGGCTTGATCTTGGTCCCG TTTTGTCTCGCTTTACGTGTTTGCATCTTCCGCGTTGAAGACGCGAAAAA CCAACACAGCAGCTACCAGAAAAGGAACATGAAGCATACAATGCAGAGGC AGGTCGTAACTTGGAGAGCTCACCCGCCTCTCGCTTCTTTTTTTTTGGTT TGTCTCCGGATTCCATGTTCGTGTGTTTCTCCGTTTACAGATGGGCGCGG CAAGTTATGGGTCTCATCGAGCTTGAGCCCGGGCTCCTGATGCGCAGCGT TTTTTCGTTCACCGAAATCTACTCGGGCTCTAAGGTGTGACGGCCGTTCG GGACTACAACGTACGTCGAGCGAGACTCTATACAACATGAAGCACCTTGG TTTCAGAGAACACTTGTTTGAGACGAAATTGTTGATCATGGGGGATTGGG CTGGGGATAGTTCTCGCCGGTGACCAATGCCTTGGATGCGGCACGGACCG GGGCACTTTGCAACGAACGCTTGCCTTGGGAAACCTTGCTGTTATTCTCT CAAGCGACGGGCCAGGTGTTCGGTCGGTCTTCTTTCAGCCTTCTGATGTT TGGGACATGGGCCGAATCTCCGCGCAGTCAAACAAACTTTTCTTTCTCAC CATGTGCCCAAACAATCTGGAAGCGATCACTTCGTGTGTACGCACAGCCT GATTTCACGGTCGACGAGGGAAAGGAACGGCTGAATCCTCTCCGCGTTAG AAGTCAAGGCAAGCCCCGTAGAAGAAAGGTGAAGAAGTACTCTTGAGCGG CATTCCTCCGGTGTGACCCCGGCTGGTGTGTCCTGAAATAGTACCGACAG GCACAAAGACAGACGCCCCGAATAAGAAAAGGGCACGGCAATAACAAAAA ACGGAGCAAGTGCAAATGGCGTGTGCTCACAAAATCCAGGCTTCATCCCT GCAACCCATTACTGCTGTTGCCGTTGTTGCTGCTAAACACCATTGTGGTT GATTCTTCTGTCTTCAATATTTGAACACCGTTGACCTCTCCATCGGTAGC ATCTTTTCACCCGAGACATGTCCCCAGCAGAAGCACAAAAGTGCGAACAC CCTGGGGGGTCGTTCGGGCGTGCTGTCGTTTCACGCAAGCATCGCTCCCC TACCATTGGAGTACTGTTCTACCCGGGGCGTTCGGTTTCACTTCGCGTTC GTGAGCGTCTCCTCCTGGGAGCCTTCAGCCCAGAGGGAATTGCGGTGCTC AAGCCGGGTGGTGATCCAACTCATTTTGCGGGACTGGCCTTGGGCAACAG TGCTAGCTCTTCTACCCGTTGCATGTACGAAACCCTGTTTCTCGCGGCCG GCCCTGTATCTTGTGTGCGAAAAAGGTTCGGCACTTCGGGGAGATCCGTC GAAACTCGAAGGTTCCCTACGAAGAAATGATTTTCTTCGACGATTGGGAC CAGAACTGCAAGGACGTGGGCAAGCTCGGTGTCACCTGCGTGGAGTGTCG GCGGGTGAGAATTATTGGTAGATCAGGGTGTACCGGGGTAGTCTATTTCT TGAGTCCTGATTTCTGATGTCCAAAGTTTTTGAGTGAAGGTGGTTTCAAC CTTTTGGCGTCGGGGATGTCAAACCATGCATGCTGGGGATGAAGCAAAAC CTTCTGATTGCGATATGGTGGAGGATTGTTAGGGAAAGGCTGTCTAAAAT ACTTTTTTTTTTTTGTTCTGGGTGAAGTACGTTTTTTTGGACACATGTAG ACTGCCAATAAGAAGCTGGGTGAACGCATCCGCGGGTGCGTTGTTCGTTC ATCCCAGTTTTGGGCAACGCGCTGTACCCGGGAGTGCCTGTTGCGGTCGT GTTCTTCGGGAGCCGTGTCAGCGACCAATCACGCGTCTAATATTTTTAGA CTACCACGGGAGGGCGACGAGTTGGTTGGATCTCCCAGACTCTGATACCG GGTGGCTTGAGTGTGCAGGCTTGCCTCCTCGCGTTGGGCCTGCTGCGAAC CCTTTCTCCCGCTGGCTTCACCCACAGCATACGGAAGCTTCGGTGGCCCT CTCTCCCACTCAGCACCCCGGCTTTTGCCAGTGCCGGGCGCACTGTTGTG CCAGTGCTTCCTCATAACGCGCTCTGCCCTTGTTTCATCTGGCTGACCGC GCAACATTACGAACAACCCATACAGCAGCGGGGGTCCCCGATTACGGCGG TGGTGGGGCAGCTGAAAATGACCGCCTTATATGGGGCATAGACCACCGTG TTCAATGTGTAGAAAAACTTGATTATTCCGTCTATGCCAGCCAGCTTCAC TCGCCTTGTAAAGGGCGATCGCCTTATTCGGGAACCCCCACTGTATCGCG AACAGACAGTTGTGTCTCACCTGCAGCCGTTTCGCCCTCCCACCCCATGT CTTCTCCATGGCGGTTATACCTCATCGCCGGCAGCAGCTGAGCGTGTTCT ACCGATAGTCGTTTCCCCACGGCAGACCGATAAACTGTGACCCAAATCTC GTCCCCCCGCCCTGCTAAGACTCTCCTCCACCCGTTTTGCCGTTTTTGCT CGAAACCTGTGTCACAGGGTTTGAGCCGAGAAGTGTGGACCCGGGGACTA GCCAAATTTGCCGCAACTAAAGAGAGCCTGAGGCCGTGACAACGGGTGTT CTTTTTCAATTTTTGCTGAGACGCTTGGTAATGGCCCGTGGCGGTGGGGT GGGGTACGACGAATGCATAAATAGCTCTTGCACCCATCCCATTCGAAGGC AGGCGGCGAGGCTGGTCATTCGTCCAACGTGCTTGGATACGCATGTCAGA TATGTCAGGCGGGGAGAGCACCCTATGCTGTCCACTACTACAGTTGTTTA GCGATATATTAGTCATCAGGATGCTTGCGCCCGGGCCGGGATCGCGATAT TTTTTTTTGTGCGAATGCGCTGCTTTGAGGGCGCTGCTACCACGTGTGTC GGTTCACTTCTCTATGCCACCCACCCGCCACGCCTAGGTTGGGTCCATTT GTCCCAGATATTCTGGACTACAGCTAAAACGACCTCACGCTCCGAATGTA TCCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:650432..656285+

>mRNA_Ecto-sp6_S_contig83.17551.1 ID=mRNA_Ecto-sp6_S_contig83.17551.1|Name=mRNA_Ecto-sp6_S_contig83.17551.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:650432..656285+ (Ectocarpus species6 EcLAC_371)
ATGGCTCTGAGAGTGGTTGTGGGGCTACTTTTGGTGGTGTTAGTTACGGA
AGAAATCAGCGCGTTCGTTACCGTTCCCACGAGAACAGCTCGAAGAGGGC
AGTATCCGAAACACGCAGGAAAACACCCCACGACCAACGGGCTGCGCATG
ATGATGGGCAAGAAGGGAGGGGCTCGTTCGAAGAAGAAGCGAGGGCGAGG
CGGGATCGGAGATGTCGGCGTGGAGGACGAGGCTGTTGGTATGGATAAGA
GGGGGGACGCTGCGGCAGAAGAGAGCGATGGGAGTGTGCCTCGCCTGGTT
GTTATGGACCTTGACTACACGTTGTGGAAGCCGGAGCTGTACCAGATGAG
GGGGGCGCCCTTCACCAAGAAGAAGGACGGCAAGGTAAGGGATCGCTCGG
GCGAGGTGATCGACCTCTTCCCCGGCGTTCGAGAAGCGCTGCTGGAGGTG
CACAGGGGGCATCGCTTCAGGGACACCAAGCTGGCCATCGCTTCGAGGAC
GTCGCACGAAAGATGGGCGCGGCAAGTTATGGGTCTCATCGAGCTTGAGC
CCGGGCTCCTGATGCGCAGCGTTTTTTCGTTCACCGAAATCTACTCGGGC
TCTAAGGTTCGGCACTTCGGGGAGATCCGTCGAAACTCGAAGGTTCCCTA
CGAAGAAATGATTTTCTTCGACGATTGGGACCAGAACTGCAAGGACGTGG
GCAAGCTCGGTGTCACCTGCGTGGAGTGTCGGCGGGGTTTGAGCCGAGAA
GTGTGGACCCGGGGACTAGCCAAATTTGCCGCAACTAAAGAGAGCCTGAG
GCCGTGA
back to top