mRNA_Ecto-sp6_S_contig83.17535.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17535.1
Unique NamemRNA_Ecto-sp6_S_contig83.17535.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig83.17535.1 vs. uniprot
Match: D7G283_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G283_ECTSI)

HSP 1 Score: 1014 bits (2621), Expect = 0.000e+0
Identity = 520/558 (93.19%), Postives = 526/558 (94.27%), Query Frame = 1 
Query:    1 MFRDPTEPGSATRRFSSAVYSSRLAGATRTFRDPIISHGLETEGTVGGRSSTSRRGGSRSDMDRMIPEGASDSSPVTTAGGNQTSTANGSSRRASLFEWLVAKKGTGGG-EFSQYMSAVECGSDEQQDAVHDEEQDLGRGFSDYESSMDMNSLRRQAAVVEV-AEEGATTTIPSVDNISSDPPLTAEALEHHTRTHSSGKSNRSEGSASAALNGNDTKDTLAASAGRSLPRPRSTSKSSRTGGDDEAGDAVLPEFHQSHDEAQEELTIDEPTTPVVADINDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQPPNEFDREHXXXXXXXXXXXQWPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSKKASVLYWRYKTGPFGRGAAAGANQGLGVEDRRVIPLSSLANIGPAELYRQGAPSSRRNLLSWLSIPSSLRRANEDAPVGYGKIQIDKDLDGVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSYGLRLCCLHFHNYSCPQDLEDIR 1668
            MFRDPTEPGS TRRFSSAVYSSRLAGATRTFRDPIISHGLET GT GGRSST RRGGSRSDMDRMIPEGASDSSP TTAGGNQTSTAN SSRRASLFEWLVAKKGTGGG EFSQYMSAVECGSDEQQDAVH+EEQD GRGFSDYESSMDMNSLRRQAAVVEV AEEGATTTIPS+DNISSDPPLTAEALEHHTRTHSSGKSNRSEGSASAALNGNDTK  LAASAGRSLPRPRSTSKSS TG DDEAGDAVLPEFHQSHDEAQEELTIDEPTTP   DINDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQP +EFDREH           QWPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDS+KASVLYWRYKTGPFGRGAAAGANQGLG EDRRVIPLSSLANIGPAELYRQG PSSRRNLLSWLSIPSSLRRA+EDAPVGYGKIQ DKDLD VDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLS+GLRLCCLHFHNYSCPQDLEDIR
Sbjct:    1 MFRDPTEPGSGTRRFSSAVYSSRLAGATRTFRDPIISHGLETAGTAGGRSSTGRRGGSRSDMDRMIPEGASDSSPATTAGGNQTSTANSSSRRASLFEWLVAKKGTGGGGEFSQYMSAVECGSDEQQDAVHNEEQDFGRGFSDYESSMDMNSLRRQAAVVEVLAEEGATTTIPSIDNISSDPPLTAEALEHHTRTHSSGKSNRSEGSASAALNGNDTKHILAASAGRSLPRPRSTSKSSHTGSDDEAGDAVLPEFHQSHDEAQEELTIDEPTTPAAVDINDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQPSDEFDREHRQQHTKHDDYDQWPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRGAAAGANQGLGAEDRRVIPLSSLANIGPAELYRQGPPSSRRNLLSWLSIPSSLRRASEDAPVGYGKIQKDKDLDSVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 558
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BLAST of mRNA_Ecto-sp6_S_contig83.17535.1 vs. uniprot
Match: A0A6H5L7W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W7_9PHAE)

HSP 1 Score: 866 bits (2238), Expect = 8.260e-313
Identity = 464/582 (79.73%), Postives = 483/582 (82.99%), Query Frame = 1 
Query:   10 DPTEPGSATRRFSSAVYSSRLAGATRTFRDP-----------------------------IISHGLETEGTVGGRSSTSRRGGSRSDMDRMIPEGASDSSPVTTAGGNQTSTANGSSRRASLFEWLVAKKGTGGGEFSQYMSAVECGSDEQQDAVHDEEQDLGRGFSDYESSMDMNSLRRQAAVVEVAEEGATTTIPSVDNISSDPPLTAEALEHHTRTHSSGKSNRSEGSASAALNGNDTKDTLAASAGRSLPRPRSTSKSSRTGGDDEAGDAVLPEFHQSHDEAQEELTIDEPTTPVVADINDIYADDVTGGESRRVTFLSGTMGLTVDISDPMQPQPPNEFDREHXXXXXXXXXXXQWPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSKKASVLYWRYKTGPFGRGAAAGANQGLGVEDRRVIPLSSLANIGPAELYRQGAPSSRRNLLSWLSIPSSLRRANEDAPVGYGKIQIDKDLDGVDKGTAGLVEAVPVLALSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSYGLRLCCLHFHNYSCPQDLEDIR 1668
            D T P     RF  + Y  R +G TR FRDP                             I+SHGLET GT GGRSST RRGGSRSDMDRM  +GASDSSP T+ GGNQ STA G SRRASLFEWLV KKGTGG EFS+Y+SAVE GSDEQQDAVHDEEQDLGRGFSDYESSM+MNSLRR++AVVEVAEEGAT TIPS+DNISSDPPLTAE LE HTRTHS GK+NRSE  +SA LNGNDT+D L ASAGRSLPRPR TS SSRTGGDDEAGDAVLPEFHQSHDE QEE+TIDEPTTP  ADI DIYADDVT GESRRVTFLS TMGLTVDISDPMQP          XXXXXXXXXXX  PASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDS+KASVLYWRYKTGPFGR  AAG NQGLG EDRRVIPLSSLANIGPAELYR GAPSSRRNLLSWLSIPSSLRRAN D+PV Y KIQ DKDLDGVD G AGLVEAVPVLALSYWVEG+PRWVGD PKRLLV PDSLDSFQRLS+GLRLCCLHFHNYSCPQDLEDIR
Sbjct:   20 DTTTPVRRNSRFPFSTYPGRFSGTTRMFRDPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVSHGLETAGTPGGRSSTGRRGGSRSDMDRMTSKGASDSSPTTSPGGNQASTAYGGSRRASLFEWLVPKKGTGGAEFSEYVSAVESGSDEQQDAVHDEEQDLGRGFSDYESSMNMNSLRRESAVVEVAEEGATATIPSIDNISSDPPLTAEVLEQHTRTHSGGKNNRSESRSSATLNGNDTRDILTASAGRSLPRPRGTSMSSRTGGDDEAGDAVLPEFHQSHDETQEEITIDEPTTPAAADIEDIYADDVTHGESRRVTFLSRTMGLTVDISDPMQPXXXXXXXXXXXXXXXXXXXXXXXPASPCSGVILDTSPRYGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSRKASVLYWRYKTGPFGRRTAAGGNQGLGAEDRRVIPLSSLANIGPAELYRHGAPSSRRNLLSWLSIPSSLRRANGDSPVDYRKIQKDKDLDGVDNGKAGLVEAVPVLALSYWVEGKPRWVGDHPKRLLVMPDSLDSFQRLSHGLRLCCLHFHNYSCPQDLEDIR 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G283_ECTSI0.000e+093.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7W7_9PHAE8.260e-31379.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:478598..481605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1671
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002110.1
Cds size1671
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350466.1248167-CDS-Ecto-sp6_S_contig83:478597..4787391682350466.1248167-CDS-Ecto-sp6_S_contig83:478597..478739Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 478598..478739 -
1682350466.136448-CDS-Ecto-sp6_S_contig83:479031..4792851682350466.136448-CDS-Ecto-sp6_S_contig83:479031..479285Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 479032..479285 -
1682350466.1469862-CDS-Ecto-sp6_S_contig83:479705..4798731682350466.1469862-CDS-Ecto-sp6_S_contig83:479705..479873Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 479706..479873 -
1682350466.157238-CDS-Ecto-sp6_S_contig83:480498..4816051682350466.157238-CDS-Ecto-sp6_S_contig83:480498..481605Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 480499..481605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17535.1prot_Ecto-sp6_S_contig83.17535.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 478598..481605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17535.1

>prot_Ecto-sp6_S_contig83.17535.1 ID=prot_Ecto-sp6_S_contig83.17535.1|Name=mRNA_Ecto-sp6_S_contig83.17535.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=557bp
MFRDPTEPGSATRRFSSAVYSSRLAGATRTFRDPIISHGLETEGTVGGRS
STSRRGGSRSDMDRMIPEGASDSSPVTTAGGNQTSTANGSSRRASLFEWL
VAKKGTGGGEFSQYMSAVECGSDEQQDAVHDEEQDLGRGFSDYESSMDMN
SLRRQAAVVEVAEEGATTTIPSVDNISSDPPLTAEALEHHTRTHSSGKSN
RSEGSASAALNGNDTKDTLAASAGRSLPRPRSTSKSSRTGGDDEAGDAVL
PEFHQSHDEAQEELTIDEPTTPVVADINDIYADDVTGGESRRVTFLSGTM
GLTVDISDPMQPQPPNEFDREHRQQHKKHDDYDQWPASPCSGVILDTSPR
YGTLQAFRKEMASRGINAQMFHTGWKGSFLPPRDIRLFMTDSKKASVLYW
RYKTGPFGRGAAAGANQGLGVEDRRVIPLSSLANIGPAELYRQGAPSSRR
NLLSWLSIPSSLRRANEDAPVGYGKIQIDKDLDGVDKGTAGLVEAVPVLA
LSYWVEGEPRWVGDQPKRLLVRPDSLDSFQRLSYGLRLCCLHFHNYSCPQ
DLEDIR*
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mRNA from alignment at Ecto-sp6_S_contig83:478598..481605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17535.1 ID=mRNA_Ecto-sp6_S_contig83.17535.1|Name=mRNA_Ecto-sp6_S_contig83.17535.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3008bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:478598..481605- (Ectocarpus species6 EcLAC_371)
ATGTTTCGGGACCCGACTGAGCCAGGCTCCGCCACCAGGAGGTTCTCCTC
GGCGGTCTATAGCAGCAGGCTCGCTGGAGCGACGCGAACGTTCCGAGACC
CGATCATCTCGCACGGTCTGGAGACGGAAGGCACAGTGGGCGGCCGCTCT
TCCACGAGTAGGCGCGGAGGTTCCCGCTCCGATATGGACAGAATGATACC
GGAGGGGGCTTCAGATTCTTCACCCGTAACAACCGCCGGAGGGAACCAAA
CTTCCACCGCTAACGGCAGCAGCCGGCGCGCGAGTCTCTTCGAATGGCTG
GTGGCAAAGAAAGGCACAGGAGGAGGGGAATTTTCGCAGTACATGTCGGC
GGTCGAGTGCGGTAGTGACGAACAACAGGACGCCGTCCACGATGAGGAGC
AGGATCTCGGGCGTGGTTTTAGCGACTATGAGTCCTCTATGGACATGAAC
TCGTTGAGGAGGCAAGCAGCAGTGGTGGAAGTAGCTGAAGAGGGAGCAAC
AACAACCATCCCATCGGTCGACAACATCAGCAGTGACCCCCCCCTCACCG
CAGAAGCCCTTGAGCACCATACACGTACGCACAGCAGCGGGAAGAGCAAC
AGAAGCGAAGGTAGCGCCAGTGCCGCACTCAATGGAAATGATACGAAGGA
TACATTAGCAGCCTCGGCGGGACGCAGCCTACCCCGACCCAGGAGCACGA
GCAAGAGCAGCCGCACGGGAGGCGATGACGAAGCGGGGGACGCGGTTCTC
CCAGAGTTTCACCAGTCTCATGACGAAGCCCAAGAAGAGCTTACCATCGA
TGAGCCCACTACACCCGTCGTCGCGGACATCAACGACATCTACGCTGATG
ACGTCACGGGCGGAGAGTCGCGCCGGGTCACGTTCTTGTCCGGAACGATG
GGGCTGACGGTGGACATCAGCGACCCGATGCAGCCACAGCCACCCAACGA
ATTTGACCGGGAACATCGTCAACAACACAAGAAACACGATGACTACGACC
AGTGGCCAGCGTCACCCTGCAGTGGAGTGATCCTGGATACATCTCCTCGA
TACGGCACCTTGCAGGCATTTCGCAAGGAAATGGCTTCCCGTGGCATCAA
CGCGCAGGTGAGGGGGTCAATGCCATTTGCTATCCGGCGACTACGAAGTT
AATACTCGTAAGATTCGTAGTTACCGTACTGAGTCCACGCGTTCAAACCA
CCTTTTGCGAGTTGCAGGTGCCATCGTGCACTTGCACTCACTCAGCCCGT
CGGGAGAATTCGCCCGCGATTTGCAGATGCGCAAGTTGATGGAGACAGTA
TTTACATGTAGACCTGAACGTTCGAACACGCGCGTTCTCCTTGTACACAT
TTGCGCTGCAACACCCAAGATGATCGAGTACAGCCTCGTCTACGCCGTTG
CATCTCCCATACGTACTCCGTCGAGTGTATACCGGGTGACAAAAGGTTGA
CTTTTTGAGGTGCTCACTAAGCATGCCTCACTTACGAGGTATGTCGGCAG
TTCAAACCAAGAACGGTGCAACTTTGCCTACTCTACAGTAGTGACGGACA
AGAAGGTGTAATTTCGACTACGTCAGACACGAAACCGCCGGCCTTACGAC
GTGCACACCGCGGCGGGATCTCGAGCGGGACGACCAAATGGCGCCCCAAC
CTATTTCGCCACAACAAAGACATCGAACGGCCCCCCGGTGTGCCTAGTGT
GTAACACGCCGGCATTGTTGCCCCCTTGGCAGATGTTTCACACAGGATGG
AAGGGCAGCTTCCTACCGCCCCGTGATATTCGACTCTTTATGACGGATTC
AAAAAAAGCGTCAGTGCTGTATTGGAGATACAAGACGGGACCGTTTGGTC
GAGGGGCCGCCGCAGGGGCCAACCAAGGCCTCGGCGTAGAGGATCGCAGA
GTGAGTGTGCCTGCGTTGCGCTGGAGCACACGTTTCTCTGTAACCTGAGG
GCATCGGTCCATCGACGATAAACAGAGAGGCCTCGACGGCCCGTGCGTTG
CAACCATACGGGACACCGTCCGACAGCGTAGAAACAGGTGATACGGTCGG
TGTATGCATGTCCGGTGGTATCAGTCTGATCATATCCGGTTCAAGGTTGT
GGAACCCTGTGGTTCTCTGGGAAGCGCCAGATGCCTGATATTCATGAACA
TTCAACCATTTCGCCCCTAGCGCACGATGGCGCATAGAAACACGTATGGA
GCTCGAGCGGCAGTGCTTGTCTCCGTTCGCGTCGGCGCCACCGACAACGT
CTCACCCCCGGCATTCCCACACGTGCTCCTGTCTCCACCTCGATTGATGA
ACCCAATTTTCTCCTCCCAGGTGATCCCCCTGAGCTCATTAGCCAATATT
GGCCCCGCGGAGCTCTACCGACAAGGGGCCCCCAGCAGCAGGCGTAACCT
CTTGTCGTGGCTCTCAATCCCGTCGTCGCTCAGACGAGCAAACGAGGACG
CACCCGTCGGCTACGGGAAGATCCAGATTGACAAGGACTTGGACGGTGTC
GACAAAGGCACTGCCGGATTGGTCGAGGCCGTTCCCGTGCTAGCCCTGAG
CTACTGGGTGGAGGGGGAACCGAGGTGAAAAGGCAGTTAATGAGTGTCGC
TTGAGGACACAGGATATAAACTCAACAGACTTGTATGCAAGGCCCACTCC
TGTTTATCAAAGGCTGCGGGTATCGTGAAGCTGATTTTGTCTACGTTTTG
TTCCCCGTCAACCTTCGTGAGTAGGGCCAAAACACTACACGGCTGGGCCG
CGAGACTCGTTTTGTCATCATCAGCAGACGTCACGGAGTACACCCATCTA
GCTAACCGTGTGTGTACGCGTGAGGTGGCCTCAACGAAAACGCTCATTTT
CCTCTCGGCGCCGTAGGTGGGTCGGAGACCAGCCGAAGCGCCTTCTCGTC
AGGCCGGACAGCCTGGACTCCTTCCAGCGCCTCTCGTACGGTCTACGCCT
GTGCTGTCTCCACTTCCACAACTACTCCTGCCCTCAAGATCTCGAAGATA
TCCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:478598..481605-

>mRNA_Ecto-sp6_S_contig83.17535.1 ID=mRNA_Ecto-sp6_S_contig83.17535.1|Name=mRNA_Ecto-sp6_S_contig83.17535.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1671bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:478598..481605- (Ectocarpus species6 EcLAC_371)
ATGTTTCGGGACCCGACTGAGCCAGGCTCCGCCACCAGGAGGTTCTCCTC
GGCGGTCTATAGCAGCAGGCTCGCTGGAGCGACGCGAACGTTCCGAGACC
CGATCATCTCGCACGGTCTGGAGACGGAAGGCACAGTGGGCGGCCGCTCT
TCCACGAGTAGGCGCGGAGGTTCCCGCTCCGATATGGACAGAATGATACC
GGAGGGGGCTTCAGATTCTTCACCCGTAACAACCGCCGGAGGGAACCAAA
CTTCCACCGCTAACGGCAGCAGCCGGCGCGCGAGTCTCTTCGAATGGCTG
GTGGCAAAGAAAGGCACAGGAGGAGGGGAATTTTCGCAGTACATGTCGGC
GGTCGAGTGCGGTAGTGACGAACAACAGGACGCCGTCCACGATGAGGAGC
AGGATCTCGGGCGTGGTTTTAGCGACTATGAGTCCTCTATGGACATGAAC
TCGTTGAGGAGGCAAGCAGCAGTGGTGGAAGTAGCTGAAGAGGGAGCAAC
AACAACCATCCCATCGGTCGACAACATCAGCAGTGACCCCCCCCTCACCG
CAGAAGCCCTTGAGCACCATACACGTACGCACAGCAGCGGGAAGAGCAAC
AGAAGCGAAGGTAGCGCCAGTGCCGCACTCAATGGAAATGATACGAAGGA
TACATTAGCAGCCTCGGCGGGACGCAGCCTACCCCGACCCAGGAGCACGA
GCAAGAGCAGCCGCACGGGAGGCGATGACGAAGCGGGGGACGCGGTTCTC
CCAGAGTTTCACCAGTCTCATGACGAAGCCCAAGAAGAGCTTACCATCGA
TGAGCCCACTACACCCGTCGTCGCGGACATCAACGACATCTACGCTGATG
ACGTCACGGGCGGAGAGTCGCGCCGGGTCACGTTCTTGTCCGGAACGATG
GGGCTGACGGTGGACATCAGCGACCCGATGCAGCCACAGCCACCCAACGA
ATTTGACCGGGAACATCGTCAACAACACAAGAAACACGATGACTACGACC
AGTGGCCAGCGTCACCCTGCAGTGGAGTGATCCTGGATACATCTCCTCGA
TACGGCACCTTGCAGGCATTTCGCAAGGAAATGGCTTCCCGTGGCATCAA
CGCGCAGATGTTTCACACAGGATGGAAGGGCAGCTTCCTACCGCCCCGTG
ATATTCGACTCTTTATGACGGATTCAAAAAAAGCGTCAGTGCTGTATTGG
AGATACAAGACGGGACCGTTTGGTCGAGGGGCCGCCGCAGGGGCCAACCA
AGGCCTCGGCGTAGAGGATCGCAGAGTGATCCCCCTGAGCTCATTAGCCA
ATATTGGCCCCGCGGAGCTCTACCGACAAGGGGCCCCCAGCAGCAGGCGT
AACCTCTTGTCGTGGCTCTCAATCCCGTCGTCGCTCAGACGAGCAAACGA
GGACGCACCCGTCGGCTACGGGAAGATCCAGATTGACAAGGACTTGGACG
GTGTCGACAAAGGCACTGCCGGATTGGTCGAGGCCGTTCCCGTGCTAGCC
CTGAGCTACTGGGTGGAGGGGGAACCGAGGTGGGTCGGAGACCAGCCGAA
GCGCCTTCTCGTCAGGCCGGACAGCCTGGACTCCTTCCAGCGCCTCTCGT
ACGGTCTACGCCTGTGCTGTCTCCACTTCCACAACTACTCCTGCCCTCAA
GATCTCGAAGATATCCGATGA
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