mRNA_Ecto-sp6_S_contig83.17498.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17498.1
Unique NamemRNA_Ecto-sp6_S_contig83.17498.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:180367..180810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size444
Hectar predicted targeting categorysignal peptide
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350461.0904548-UTR-Ecto-sp6_S_contig83:180366..1803851682350461.0904548-UTR-Ecto-sp6_S_contig83:180366..180385Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 180367..180385 +
1682350461.1070879-UTR-Ecto-sp6_S_contig83:180757..1808101682350461.1070879-UTR-Ecto-sp6_S_contig83:180757..180810Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 180758..180810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350461.0991585-CDS-Ecto-sp6_S_contig83:180385..1807571682350461.0991585-CDS-Ecto-sp6_S_contig83:180385..180757Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 180386..180757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17498.1prot_Ecto-sp6_S_contig83.17498.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 180386..180757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17498.1

>prot_Ecto-sp6_S_contig83.17498.1 ID=prot_Ecto-sp6_S_contig83.17498.1|Name=mRNA_Ecto-sp6_S_contig83.17498.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=124bp
MSHGTRRRLRSSFSLMLIWICVRCGIIMQPAAKSKYSSTLTAFSAGNILR
DVHFCCGRYLCSCAAGPWMPPLYVTYLLPPPVLFPIERIRWLFEIVVFHG
SMLFGCACGIQREQLGGPFGEST*
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mRNA from alignment at Ecto-sp6_S_contig83:180367..180810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17498.1 ID=mRNA_Ecto-sp6_S_contig83.17498.1|Name=mRNA_Ecto-sp6_S_contig83.17498.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=444bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:180367..180810+ (Ectocarpus species6 EcLAC_371)
ggaGGGGGTCACAGTCCGGATGTCCCATGGAACGCGGCGTCGTCTTCGTT
CGAGTTTTTCGCTCATGTTGATTTGGATCTGCGTGCGATGCGGGATAATA
ATGCAACCCGCGGCGAAGAGCAAATACTCTTCCACTCTTACGGCTTTTTC
TGCTGGGAATATTTTGCGCGATGTCCATTTCTGTTGCGGGCGATATTTGT
GCTCGTGTGCGGCGGGTCCATGGATGCCCCCCCTCTATGTGACGTACTTG
CTGCCGCCCCCCGTATTGTTCCCGATTGAACGAATACGCTGGTTGTTTGA
AATCGTCGTTTTTCATGGTTCGATGCTCTTTGGTTGTGCGTGCGGCATAC
AGAGGGAGCAGTTAGGAGGTCCATTCGGTGAGAGCACGTGAAACGCCACA
GACGCCACGTGCGGGTAACGATTTTTTTTTTCGTGTTTCTCTCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:180367..180810+

>mRNA_Ecto-sp6_S_contig83.17498.1 ID=mRNA_Ecto-sp6_S_contig83.17498.1|Name=mRNA_Ecto-sp6_S_contig83.17498.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:180367..180810+ (Ectocarpus species6 EcLAC_371)
ATGTCCCATGGAACGCGGCGTCGTCTTCGTTCGAGTTTTTCGCTCATGTT
GATTTGGATCTGCGTGCGATGCGGGATAATAATGCAACCCGCGGCGAAGA
GCAAATACTCTTCCACTCTTACGGCTTTTTCTGCTGGGAATATTTTGCGC
GATGTCCATTTCTGTTGCGGGCGATATTTGTGCTCGTGTGCGGCGGGTCC
ATGGATGCCCCCCCTCTATGTGACGTACTTGCTGCCGCCCCCCGTATTGT
TCCCGATTGAACGAATACGCTGGTTGTTTGAAATCGTCGTTTTTCATGGT
TCGATGCTCTTTGGTTGTGCGTGCGGCATACAGAGGGAGCAGTTAGGAGG
TCCATTCGGTGAGAGCACGTGA
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