mRNA_Ecto-sp6_S_contig83.17497.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17497.1
Unique NamemRNA_Ecto-sp6_S_contig83.17497.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig83.17497.1 vs. uniprot
Match: A0A6H5JC58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC58_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 9.250e-10
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:    8 PKYVARSWFVSPALALLSVACLGCISAIQRPPGET 112
            PKYVARSWFVSPALAL+S+ACL CISA+QRPP ET
Sbjct:  443 PKYVARSWFVSPALALISIACLRCISAVQRPPDET 477
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JC58_9PHAE9.250e-1085.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:179381..180171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size661
Hectar predicted targeting categorysignal anchor
Exons2
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350460.9482174-UTR-Ecto-sp6_S_contig83:179380..1796381682350460.9482174-UTR-Ecto-sp6_S_contig83:179380..179638Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 179381..179638 +
1682350460.9717994-UTR-Ecto-sp6_S_contig83:180113..1801711682350460.9717994-UTR-Ecto-sp6_S_contig83:180113..180171Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 180114..180171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350460.956463-CDS-Ecto-sp6_S_contig83:179638..1797141682350460.956463-CDS-Ecto-sp6_S_contig83:179638..179714Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 179639..179714 +
1682350460.9641962-CDS-Ecto-sp6_S_contig83:179844..1801131682350460.9641962-CDS-Ecto-sp6_S_contig83:179844..180113Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 179845..180113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17497.1prot_Ecto-sp6_S_contig83.17497.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 179639..180113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17497.1

>prot_Ecto-sp6_S_contig83.17497.1 ID=prot_Ecto-sp6_S_contig83.17497.1|Name=mRNA_Ecto-sp6_S_contig83.17497.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
MVLSRLRLRSVLFGHPSPAQPRCYSICVCVCVICVVFCASYFSLSAALVA
AVTPHGPWEGTKTHAPSQALLRCVARRDTRHGSKAVYKTTWELVQSLERA
CKAYLYRSSTVPLL*
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mRNA from alignment at Ecto-sp6_S_contig83:179381..180171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17497.1 ID=mRNA_Ecto-sp6_S_contig83.17497.1|Name=mRNA_Ecto-sp6_S_contig83.17497.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=791bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:179381..180171+ (Ectocarpus species6 EcLAC_371)
GGCAGCACCAAAATACGTGGCACGTAGTTGGTTCGTGTCGCCCGCTTTGG
CCCTTCTTTCGGTAGCGTGTCTTGGATGTATCAGTGCAATCCAACGGCCC
CCCGGCGAGACATAGCTTGGGTGTTTTAGAGCCGCACGTCGTCGAAGCTG
GACCACTCAGCAGCAGTGACAGACAGACAGACCGTGACGTACACCGGTAG
ACAGACGCACGAACGAAGCGGTTGTTGTAGAGGTCCGACTTTTTGAGGCG
CCCCTCAAATGGTCTTGAGCCGGTTGCGATTAAGGTCTGTTCTTTTCGGC
CACCCTTCCCCGGCTCAACCGCGGTGTTACAGCAGTTTTTGGATGTACAG
ACAGACAGGTCTCAAGGTGGTTGTTCCTTGTGTTGTGGATTTTGTTGTGA
GGTGACGTTGGTGTTGGTATTGGCAGGGAGATTTACTCATTTGGTCTTTA
TCTAGTTGATCAAGTATGTGTGTGTGTATGTGTAATTTGTGTAGTTTTCT
GCGCCTCATATTTTTCTCTCTCCGCGGCCCTTGTCGCCGCGGTCACACCC
CACGGACCTTGGGAAGGAACTAAAACGCATGCTCCGAGTCAAGCCCTTTT
ACGCTGTGTCGCGCGAAGAGACACTCGGCATGGCAGCAAAGCGGTATACA
AGACGACTTGGGAGTTAGTGCAAAGCCTTGAGAGAGCATGTAAAGCATAT
CTGTATCGGTCTTCAACCGTTCCTCTACTATGAAACCCAGCAGGGAATGC
GTGGAATAGTTTCTCCTTGGAGAATGAGGGCGGCGTACGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:179381..180171+

>mRNA_Ecto-sp6_S_contig83.17497.1 ID=mRNA_Ecto-sp6_S_contig83.17497.1|Name=mRNA_Ecto-sp6_S_contig83.17497.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:179381..180171+ (Ectocarpus species6 EcLAC_371)
ATGGTCTTGAGCCGGTTGCGATTAAGGTCTGTTCTTTTCGGCCACCCTTC
CCCGGCTCAACCGCGGTGTTACAGCATATGTGTGTGTGTATGTGTAATTT
GTGTAGTTTTCTGCGCCTCATATTTTTCTCTCTCCGCGGCCCTTGTCGCC
GCGGTCACACCCCACGGACCTTGGGAAGGAACTAAAACGCATGCTCCGAG
TCAAGCCCTTTTACGCTGTGTCGCGCGAAGAGACACTCGGCATGGCAGCA
AAGCGGTATACAAGACGACTTGGGAGTTAGTGCAAAGCCTTGAGAGAGCA
TGTAAAGCATATCTGTATCGGTCTTCAACCGTTCCTCTACTATGA
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