mRNA_Ecto-sp6_S_contig83.17496.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17496.1
Unique NamemRNA_Ecto-sp6_S_contig83.17496.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: D7G2B9_ECTSI (Similar to dermatan 4-sulfotransferase-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B9_ECTSI)

HSP 1 Score: 541 bits (1395), Expect = 1.300e-194
Identity = 260/273 (95.24%), Postives = 262/273 (95.97%), Query Frame = 1
Query:   25 MHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFIVKRFSSNQDAKAQGATSKRERYFSKEALDVIKMVYGKDYSLFGEYFEEHSASRLQ 843
            MHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRL GCKVNSHWRPQHCFCSIARFRESYHVVPFANMS          TEAVNLVDHMRRPSPDRAELLREFIV+RFSSNQDAKAQGATSKRERYFS+EALDVIKMVYGKDYSLFGEYFEEHSASRLQ
Sbjct:    1 MHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLTGCKVNSHWRPQHCFCSIARFRESYHVVPFANMS----------TEAVNLVDHMRRPSPDRAELLREFIVQRFSSNQDAKAQGATSKRERYFSQEALDVIKMVYGKDYSLFGEYFEEHSASRLQ 263          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A6H5JC58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC58_9PHAE)

HSP 1 Score: 409 bits (1050), Expect = 7.380e-139
Identity = 188/193 (97.41%), Postives = 192/193 (99.48%), Query Frame = 1
Query:    1 MRVRSSGAMHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSAS 579
            MRVRSSGAMHPAMYVP DGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAA+NDEPRKVFRDFMLGV++DVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSA+
Sbjct:  158 MRVRSSGAMHPAMYVPGDGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAINDEPRKVFRDFMLGVQKDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSAN 350          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: D8LPX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX9_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 3.410e-43
Identity = 91/269 (33.83%), Postives = 133/269 (49.44%), Query Frame = 1
Query:   52 DGMIYCPIAKVACAEWRKTLRWMLGIPDW--DTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQ----------NCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRG--CKV-NSHWRPQHCFCSIARFRESYHVVPFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFIVKRFSSN--QDAKAQGATSKRERYFSKEALDVIKMVYGKDYSLFG 807
            +G+IYCPIAKVA AEW+++LRWM+GI DW  +   +H  GKNG+  L       I   +  D + +FVVVRDPA+RL+SAFLNKC+   +           NC Y   MP  FP  ++    T    R  +  EP   F  F  G+  +++  G  CKV N H++PQ CFC +     ++HV+PF NMSA  + F   + E + +  H        A + +  I K       Q  +  G +  R +  +    +  +    KD  + G
Sbjct:   69 EGIIYCPIAKVASAEWKRSLRWMVGIEDWMGNHTNLHSAGKNGLERLQEWGLEGITWALESDRYFRFVVVRDPAERLVSAFLNKCVTDGYMRGRLNRQGAPNCAYLSLMPTLFPNATEATLDTHQTLRDLVEREPEDTFYHFASGILAEMKREGDACKVSNHHFQPQMCFCDLREILPAFHVIPFHNMSAEAAAFAARIPEPLPISPHKEATDGGTAGISKSSIGKDGPGGMAQGGRGTGVSGSRRQEIADFLTERFETARDKDVKVTG 337          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A6H5JKQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKQ4_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.400e-40
Identity = 93/278 (33.45%), Postives = 135/278 (48.56%), Query Frame = 1
Query:   34 AMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKC----LGGEWQNCPYTEFMP-----QRFPGVSKRDAATDTK---FRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFIVKRFSSNQD--AKAQGATSKRERYFSKEALDVIKMVYGKDYSLFGEYFEEH 825
            A+ + ++ ++YCPI KVAC EW K  RW+ G  DW   P H   K+G+ +L          ++N   WLKF VVR+PA RLLS FL KC    +  E+ NCPY E  P     +RFP         DT    + A  +     +F  ++  + R V+   C  N HW PQ+C CS+      + +V +ANM           TEA +        S  R   ++EF+V R  +N +   K   A S+ +  ++ EAL  +   Y KDY LF +Y+ E+
Sbjct:  107 ALALKSERIVYCPIQKVACTEWIKVFRWIDGHEDW-AEPRHQ--KHGLDVLEEMDVERGNQILNSPDWLKFAVVREPAQRLLSCFLQKCNRYNMENEYSNCPYLELWPDLFDRERFPDGVPTRPGVDTLAIVWEAFTSRGRDSMFAPYVEVITRRVKQDPCGQNKHWSPQYCHCSLDVTAPVFRIVGWANM-----------TEAASAAIVPFASSSARGLEIKEFLVDRMDTNHERHGKKTSAGSRSQEAYTAEALQAVHEAYAKDYKLFSQYWVEN 370          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A5J4YVB4_PORPP (Carbohydrate sulfotransferase 14 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVB4_PORPP)

HSP 1 Score: 94.0 bits (232), Expect = 4.840e-18
Identity = 71/277 (25.63%), Postives = 130/277 (46.93%), Query Frame = 1
Query:    7 VRSSGAMHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDW-DTGPIHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPG--VSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFI---VKRFSSNQDAK--AQGATSKRERYFSKEALDVIKMVYGKDYSLFGEY 813
            +R+S A +  +      +IYCP+ KVA + ++  +R   G  D+ D    H + ++G+  L+     ++E +M D ++LKFV VR+P DR+LS +LNK +  + ++  Y  ++ Q +    +++RD  ++ K            F++F+  +         ++N HW  Q   CS+  F   + V  F NMSA                          AEL+ + +   ++RF S +D K  A  A+ K  +Y+S + ++ ++  Y  D+    EY
Sbjct:  245 LRASAAANRIIVSEKSRLIYCPVPKVANSNFKMLIRKFEGFEDYADLLTAHSRARSGLRFLSSYSVEEVEALMKDPTFLKFVFVRNPLDRVLSCYLNKIVNKDPKSEEYATYLGQLYGWRFLTQRDYKSERK----------PSFQEFVNAISLQSPW---QMNEHWALQSFLCSLDVFPYDF-VGRFENMSAD-------------------------AELVLQAVGRVLERFPSQKDIKFLANEASKKINKYYSPQIMERVRNTYACDFRSMPEY 482          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A812MLT8_9DINO (CHST8 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812MLT8_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 3.720e-17
Identity = 71/276 (25.72%), Postives = 114/276 (41.30%), Query Frame = 1
Query:   43 VPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNG-----IPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQN----------CPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVV----PFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFIVKRFSSNQDAKAQG---ATSKRERYFSKEALDVIKMVYGKDYSLF 804
            +P+  +++C + K   + W+  LRW++G+ DW + P H++  NG     + L    +A  I++M+ D SW K  VVRDP DRL SA+L+K  GG   N           PY  F    FP                          DF+  V   +       N HW+ Q   C + +F   Y  V    P  +M A +S            +D + + +P+ +       V+ FS  + AKA       +K    + ++     + +Y +DY LF
Sbjct:   86 IPSHRLVFCYVPKCGTSRWQTFLRWLVGVQDWASNP-HNRDANGYIGGLMQLKHLPRAEAIQIML-DPSWTKMAVVRDPLDRLRSAYLDKIAGGNDPNNTHLTKDLFGLPYEAFNATNFP--------------------------DFVTRVEFGMHHALEHENPHWQRQSRTCDLGKFLPFYQHVFFMAPDKSMRAELSDC---------FIDAVAKTAPNPS------AVRNFSFGESAKALAEHRTDAKDHATYDEQLCQKARQLYAEDYELF 318          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A7S3ED89_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ED89_9RHOD)

HSP 1 Score: 89.0 bits (219), Expect = 2.830e-16
Identity = 65/248 (26.21%), Postives = 108/248 (43.55%), Query Frame = 1
Query:   61 IYCPIAKVACAEWRKTLRWMLGIPDWDTGPI-HDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFIVKRFSSNQDAKAQGATSKRERYFSKEALDVIKMVYGKDYSL 801
            +YCP+ K+AC+ W+   R + G  D+    + HD+  +G+  L      +   M+ D  WLKFV VRDPA RLLSA+L+K    E  +  + +F  Q   G   R  A +    +         F +F++ V R        +N HW PQ   C + +F   +           + RF     +A  ++D + +P         EF  +   S     + G   K + +F+ E    +++ + +DY L
Sbjct:  215 MYCPLPKIACSNWKSLFRKLEGFKDYKNLALAHDKANSGLKYLKDYTEEEALKMVQDPEWLKFVFVRDPASRLLSAYLDKFDRRELDSPEFIKFFDQLL-GFQYRKNAVELFMPS---------FEEFIMYVGRQNDF---DMNEHWAPQVYLCQMDKFPYDF-----------VGRFENYDADAFAVLDALGQPQE-------EFPSQ---SKLGFPSMGTREKMDEHFTDEIRTQVELKFERDYRL 428          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A812MHH0_9DINO (Chst9 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812MHH0_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 8.160e-16
Identity = 68/265 (25.66%), Postives = 114/265 (43.02%), Query Frame = 1
Query:   43 VPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPIHDQGKNGIPLLARRK----ARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVV----PFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFIVKRFSSNQDAKAQG---ATSKRERYFSKEALDVIKMVYGKDYSLF 804
            +P+  +++C + K   + W++ LRW++G+ DW + P      N I  L + K    A  I++M+ D SW K  VVRDP DRL SA+L+K  G    N P      +   G+   +  + +             F DF+  V   +R      N HW+ Q   C ++ F   Y  V    P   M A +S            ++ + + +P+ +       V+ FS  + AKA       +K    + ++     + +Y +DY LF
Sbjct:   78 IPSHRLVFCYVPKAGTSRWQRFLRWLVGVQDWASNPHIRDANNYIGGLMQLKHLPRAEAIQIML-DPSWTKMAVVRDPLDRLRSAYLDKIAGA---NDPGNTNFTKHLFGLPYENFTSTS-------------FSDFLRRVEFGMRHSLDHENKHWQRQSHRCDLSTFLPFYQHVFFMPPDKTMRAELSDC---------FIEAVAKTAPNPS------AVRNFSFGESAKALAEHRTDAKDHATYDEQLCLKARQLYAEDYELF 310          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A812M394_9DINO (Chst8 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812M394_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 5.610e-15
Identity = 66/264 (25.00%), Postives = 112/264 (42.42%), Query Frame = 1
Query:   43 VPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGPI------HDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVV----PFANMSASISRFNLGLTEAVNLVDHMRRPSPDRAELLREFIVKRFSSNQDAKAQGATSKRERYFSKEALDVIKMVYGKDYSLF 804
            +P+  +++C + K   + W + LRW+ G PDWD  P       H  G   +  L R +A  I   M D  W K  VVRDP DRL SA+L++ +G    N  + + +   +  +            A+M+      F DF+  V   +       + HW+ Q   C + +F   YH V    P  +  A +S           +++ + + +P+ AE+    +  R S +  A    A S     + +E     + +Y +DY +F
Sbjct:   80 IPSRRIVFCDVQKAGSSRWLRLLRWLAGSPDWDGNPHFLDSEGHPGGLRRLEHLPREEAVQI---MRDPKWTKIAVVRDPLDRLRSAYLDRVVGATEPNEIFEKRLFAHYQSL------------ASMS------FSDFLARVELGMHFLE-NEDVHWQRQSRRCDLGKFLPLYHHVFIIPPDKSARAEVSDC---------VLEALAKTAPNPAEVRNFSMTSRASESLVAHRTDAES--HSTYDEELCLKARQLYAEDYEVF 310          
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Match: A0A7S2ZL45_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZL45_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 6.360e-15
Identity = 55/180 (30.56%), Postives = 83/180 (46.11%), Query Frame = 1
Query:   61 IYCPIAKVACAEWRKTLRWMLGIPDWDTGPI-HDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKCLGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLGVRRDVRLRGCKVNSHWRPQHCFCSIARFR-------ESYHVVPFANMSA 576
            +YCP+ K+AC+ W+   R + G  D+    + HD+  +G+  L      +   M+ D  WLKFV VRDPA RLLSA+L+K    E  +  + +F  Q   G   R  A +    +         F +F++ V R        +N HW PQ   C + +F        E+Y    FA + A
Sbjct:  215 MYCPLPKIACSNWKSLFRKLEGFKDYKNLALAHDKANSGLKYLKDYTEEEALKMVQDPEWLKFVFVRDPASRLLSAYLDKFDRRELDSPEFIKFFDQLL-GFQYRKNAVELFMPS---------FEEFIMYVGRQNDF---DMNEHWAPQVYLCQMDKFPYDFVGRFENYDADAFAALDA 381          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2B9_ECTSI1.300e-19495.24Similar to dermatan 4-sulfotransferase-1 n=1 Tax=E... [more]
A0A6H5JC58_9PHAE7.380e-13997.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPX9_ECTSI3.410e-4333.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKQ4_9PHAE5.400e-4033.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J4YVB4_PORPP4.840e-1825.63Carbohydrate sulfotransferase 14 n=1 Tax=Porphyrid... [more]
A0A812MLT8_9DINO3.720e-1725.72CHST8 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A7S3ED89_9RHOD2.830e-1626.21Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A812MHH0_9DINO8.160e-1625.66Chst9 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A812M394_9DINO5.610e-1525.00Chst8 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A7S2ZL45_9RHOD6.360e-1530.56Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:174746..179319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score542.3
Seed ortholog evalue1.3e-151
Seed eggNOG ortholog2880.D7G2B9
Model size846
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Sulfotransferase family
EggNOG OGs2EWIE@1,2SYBY@2759
Ec32 ortholog descriptionCarbohydrate sulfotransferase-related
Ec32 orthologEc-16_001720.1
Cds size846
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17496.1prot_Ecto-sp6_S_contig83.17496.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 174746..179319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350462.5538454-CDS-Ecto-sp6_S_contig83:174745..1748261682350462.5538454-CDS-Ecto-sp6_S_contig83:174745..174826Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 174746..174826 +
1682350462.5661318-CDS-Ecto-sp6_S_contig83:176740..1768211682350462.5661318-CDS-Ecto-sp6_S_contig83:176740..176821Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 176741..176821 +
1682350462.5763443-CDS-Ecto-sp6_S_contig83:177113..1771931682350462.5763443-CDS-Ecto-sp6_S_contig83:177113..177193Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 177114..177193 +
1682350462.5863483-CDS-Ecto-sp6_S_contig83:177340..1774881682350462.5863483-CDS-Ecto-sp6_S_contig83:177340..177488Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 177341..177488 +
1682350462.5961986-CDS-Ecto-sp6_S_contig83:177691..1779041682350462.5961986-CDS-Ecto-sp6_S_contig83:177691..177904Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 177692..177904 +
1682350462.6063468-CDS-Ecto-sp6_S_contig83:178530..1787041682350462.6063468-CDS-Ecto-sp6_S_contig83:178530..178704Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 178531..178704 +
1682350462.6171505-CDS-Ecto-sp6_S_contig83:179250..1793191682350462.6171505-CDS-Ecto-sp6_S_contig83:179250..179319Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 179251..179319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17496.1

>prot_Ecto-sp6_S_contig83.17496.1 ID=prot_Ecto-sp6_S_contig83.17496.1|Name=mRNA_Ecto-sp6_S_contig83.17496.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=282bp
MRVRSSGAMHPAMYVPADGMIYCPIAKVACAEWRKTLRWMLGIPDWDTGP
IHDQGKNGIPLLARRKARDIELMMNDDSWLKFVVVRDPADRLLSAFLNKC
LGGEWQNCPYTEFMPQRFPGVSKRDAATDTKFRAAMNDEPRKVFRDFMLG
VRRDVRLRGCKVNSHWRPQHCFCSIARFRESYHVVPFANMSASISRFNLG
LTEAVNLVDHMRRPSPDRAELLREFIVKRFSSNQDAKAQGATSKRERYFS
KEALDVIKMVYGKDYSLFGEYFEEHSASRLQ*
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mRNA from alignment at Ecto-sp6_S_contig83:174746..179319+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17496.1 ID=mRNA_Ecto-sp6_S_contig83.17496.1|Name=mRNA_Ecto-sp6_S_contig83.17496.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4574bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:174746..179319+ (Ectocarpus species6 EcLAC_371)
ATGCGCGTGCGGTCGTCGGGTGCCATGCACCCGGCGATGTACGTCCCGGC CGATGGGATGATCTACTGTCCGATAGCCAAGGTGAGATGATGTGCCTGCT GTCGTGTAACAGTACTTGTATAGCATATGCTTCCGTGCCAGCGGAGAGAC GGGGGGTGAGGCAGCAGCAGTGGCCGGTGTTTCGAGAGACAGCATCACCT AGATTGTTTTTGGTTGCAGTCTTTGTAGGCTTGTTACTTTTTGGTGGTGG CGTTCACCGTGCGCAAGGTGGACCTGCAACTGCTACCTTACCAGTACAAT TTTCAATTTTCTCATCTCTCCGTTGTCAGCGAGAGAAAGGATTCTGAACT TCGGATGCGCGGTGTGAGCGTACTACGCTCATGGTTGACGCATGGCCACC ACTATACAGCTTGCACAACAGAACGAGTGACGATCCTCTCTACATACTTC GCGCTTCACATGTGCACACCGATGAACCTTGATTGTCTTCGTTTTCTGCG TAACTTTGGAACGGCAAGTCAAACTACGTAGGCGTTGTCTACATCGTCTG GGGGGGTACACTTGTAGGTACAGGTAAGCACATGTACGGAGTGCACGCAA GAGCATCGTAGATGTTTACATAGTAAAAGCAGTACTGAGCCTCGATCAAC CACTAGTCGGTATCTGTCTTTTGCGGCCGCAGGCATCGGCGCAGCGACAG GTGCAGCAAAAACTTTGGGAGCATTGTAGAACTTGAAGATGTCACCTACA TGTAGACCAGCTTACAGCAATGCTCTATTTAGCCTCCTCCTCAACCCAGT TGCACCCGACTCCGGTTGAAAAATGATCTGTCGGCAGATAGCACTTTTCA CCACTTGCACCCGCCGGCACGTCTCTCCAACCATAACTATCACAACCTAG AAAGAGGGAAGGGGGTGCTGAACGTTCTCGCGGTTGAAAGTATTAAGGCA AGAACGGCAGGAGGAAAGGCGGAGGCGAAACAGCCTCCTTTATCGCCCTC TGTGCAACCCCTGCTTGGTGCATCGAGAGGTGTATTAGACTAGGCGCCCA GAATAGATAAGATGAAGACAACACTTAACGGAAGCAGCAGCAACAATGGC TGCAAAGAGACAATGTTTCCAACAGCAACATTGTTTCTGAAGCGACCTCT CTCTCGACCTGCTGTATCAAAGCTCGACCTGTATGAAAGACAGCTGACGG CGAATGTGTAGAGATGCAGGTGAGCACGCTGAAAAATTTGCTCCCTCTCG GGGCTGTGCTTGCGTGGTGTACGTTGCCACTTTCAACCTTAGGGCTCCTC GCAGGGGAGAAGGGGTGGTGCCGGTTGGCTGCTGGGATGTGTTCCGTTTT TGAGCGGCGGACCGCCGTCCCAAACGACACGACGACACCACTGGCCTGAC CTCTAGATTTTTTTTTTTTCCATCAATATGACCCAACGAATCCATCTCTA TCGAAGAAAAGAGTCAAAGATAGATTAGCAATGAATCCATAGCACCAGCA AAAATTATGTTTTTGCTACAGTTGCACCCTTCTACTGCCGCATGAGAATA GGCGTGAAGTGCCGACGTTTACAGCCCTGCGACAGTGTCCAACCTTCAAC ATCGAAAGCCCCCGAAGCAACTCAAGATTAAGCGTCGAGTGCCGACGAAG GCGTGGATGTTATTCCACCGCGTCTTCTGCTGCGTACCTCAGGCAGGCGG ATATGAATTCCTGCCCCCGCGGGCGAGAAAAAAGAGCGCCGGATCTGAGC TGGATTTATTTTCCATCCCGTTGGATCGTAGGCACGGTGTGTCTTGAGTC GGATGCCCGTGCAGCGTGGCAGATTTAGACAGGGGTGGACGGCAGATGCG TGATCGAAGCTGCCTGGTTGAAAACAACACCCTCCACCGCTCTGGCACCG CCTGTGTGCTTTCCGCGAGAGCCCCGTTTTGACCAGATTTCGTCCCGAAT CCTGCTGTGTTGTTCTTCTCTCGCGCACGGGCCCGGGTTTCCAAGGTGGC TTGTGCGGAATGGCGGAAGACGCTGAGATGGATGCTCGGGATACCGGACT GGGATACGGGACCAATACACGACCAGGTGAGGGGGTGGGTGCTGCATCTG CTGCCGGTGGTTTCGTTCGATCGCCGCAAGTCCTAACCGCCGCGCACTAT TTTATTTTCCTCCATTGCCGCAGCCGTGTTTCCCGAACAACGCATATAAC CCTCGATGCTACCCCTTCGGAAGGTGCGTTTCTCGCCGACGTGGCTTGCC ATTTTGTTCTCGTTTTTTCTTCTTCCCGGCACCCTTTTTACCGGGATCTT ACCAACGAAGGGTGGCCGCGATGGTAACTATAATAGCGCACGTGGCGTTT TTTTTCTTCGTGTCACAGGGCAAGAACGGAATACCGCTGCTTGCCCGGAG AAAGGCCCGCGACATCGAGCTTATGATGAACGACGATAGCTGGCTCAAGT GAGTAGAAGGAAGGGACGGTTCGTCCATGTGTTTGTCGCGCCATCTCTGT TGCGGCCGCTGTATAAATGTAGAACGGGTTGAGGTGGTACTTCTACGGTG CCCCCCCCCCCCTCCCCCGCCCTTGCATGAACGGTACTTGAACAGGTTTG TCGTGGTGCGAGATCCGGCTGACAGGCTGCTGTCGGCTTTCTTGAACAAG TGCTTGGGAGGGGAGTGGCAGAACTGCCCGTACACGGAGTTCATGCCGCA GCGTTTCCCCGGGGTATCGAAACGCGATGCCGCAACAGACACCGTGAGTA CACCTGTCACTTGTAGCTCCGTAGTTGTCGCCAACAGCTGTTGCAGTTGT ACTTGAAATAGTACGTCTGCCAAGGTCGCCGTGGACACCGTGGTTACCGT TGACCTCTAGCTCCGTTGTCGGCGGCAGCTGTTGCATCCCACCGTCACCA GGGGTAACCCCCTCCGTCTTTCCCCCCTCCGTCTTACACCGTGCAGAAAT TCCGCGCGGCGATGAACGACGAGCCGCGAAAGGTCTTCCGCGACTTCATG CTCGGGGTGCGAAGGGACGTGAGGCTGAGGGGTTGCAAGGTCAACTCGCA CTGGCGGCCTCAGCACTGCTTCTGCTCGATCGCCCGGTTCAGAGAGTCGT ACCACGTGGTGCCCTTCGCGAACATGTCGGCAAGTATAAGTCGATTTAAC CTCGGTTTGGTTTTTAAGAAATGTTTTGGGATGTGTTGTACTCTTTGTCC TGTGCCGCTAAATGACCTTTTTTGGCTTCGGGCAGCGGAAAATGCTTCCT AGAGTGCGCCCGATTGTCTCGTCGCACGACAAAAACCACTCGTCGTGTGC GTTGCGATTTGGCGCGTCTGCCTTTGTGTTAATAATATTACAAAAAAATT AACGGTCGCGGTGGAAGGGGCTGATGGAGCACTCACTCCATGCCTGCTTT CTCTCGGACGCCGTCCCGTCGGTGCCTTCCTGCCTATGGTTCCGACGCCG CTTGGTTGTGACCCGGCGCAGAGACTGCTGTGAATCCGATGTAGGCCTTG TGTACAGATTGTGACCAGTGCGCAAGAGACTGCTGTGAATCAGATGGGCG TGGGCGTACCTTTTTGCAGTCATTGACCGCTGCAGCCCTCGCTTGCACAT GACGCTGGGCCAACACACGCACCCCCACCTTTACGTACGCCTTGTACGAC AGAGAGCAATACCTCCGAGTGAAACAAGACATGGGCAGGCCGCATCTACA ATGAATGTCCGCGTTACCTCTTACTATCTCTTTCGTATGTCGCGTCCCGT GAAAAAAAAAAAAAAAAAAATGGGTCTGTTATTAGACGGAGGCGGTGAAC CTGGTGGATCACATGCGGAGGCCTTCCCCGGACCGTGCGGAGCTGCTGAG GGAGTTCATAGTGAAGCGGTTCAGCAGCAACCAGGACGCGAAGGCGCAGG GTGCCACCAGCAAGAGGGAGAGGTACTTCTCGAAGGAGGCGCTGGACGTC ATCAAGATGGTGAGAAATACGGACAAGACAGACAGGTATACAGACAGAGA GAGACAGGCATACGGTCAGTCAGACAGACAGACAGACGAGACAGACGGGT GACAAGGATGTTTAGTGGCAGATCGAGCTTTTTTATTTTTGTTCAAGGAC ACAGATGTCGGGCGCAACGGGCGGATGCAGAATGGGATAGGTGCGCCGAC CCTTTTTTTTTAAGCTGTGGCAATAGCGCAGTATGCGCCCACATGGTGTG TTGAAGTGTCTTGGGTCAAGAGAACAGGCGCGGCCCTCCTTCTCGTAAGG AATACGTGGCCCAATGATTGAGTCCCTGAAAAGGAAGCGAAATGATTAGG AACCCCAAGAGCCTCCTTTGGCAAAATAAGAAGGAGCGATTGGCCATCGG TGATCGGTCGTCCTGTGGGAACAACGCTCGGTCCTCTCGAGGACGCGCGG TCAATGGTCTAACAACTACAAGGCATACAAAACATGAGATTACGCCCCCC CACCCCCCCCCCCACCTGCGTGCCTTGCGAAACGCCTTTTTGTTACGACG TTAAGGTGTACGGCAAGGACTACTCTCTCTTTGGCGAGTACTTCGAGGAG CACTCCGCTTCAAGGTTGCAATAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:174746..179319+

>mRNA_Ecto-sp6_S_contig83.17496.1 ID=mRNA_Ecto-sp6_S_contig83.17496.1|Name=mRNA_Ecto-sp6_S_contig83.17496.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:174746..179319+ (Ectocarpus species6 EcLAC_371)
ATGCGCGTGCGGTCGTCGGGTGCCATGCACCCGGCGATGTACGTCCCGGC
CGATGGGATGATCTACTGTCCGATAGCCAAGGTGGCTTGTGCGGAATGGC
GGAAGACGCTGAGATGGATGCTCGGGATACCGGACTGGGATACGGGACCA
ATACACGACCAGGGCAAGAACGGAATACCGCTGCTTGCCCGGAGAAAGGC
CCGCGACATCGAGCTTATGATGAACGACGATAGCTGGCTCAAGTTTGTCG
TGGTGCGAGATCCGGCTGACAGGCTGCTGTCGGCTTTCTTGAACAAGTGC
TTGGGAGGGGAGTGGCAGAACTGCCCGTACACGGAGTTCATGCCGCAGCG
TTTCCCCGGGGTATCGAAACGCGATGCCGCAACAGACACCAAATTCCGCG
CGGCGATGAACGACGAGCCGCGAAAGGTCTTCCGCGACTTCATGCTCGGG
GTGCGAAGGGACGTGAGGCTGAGGGGTTGCAAGGTCAACTCGCACTGGCG
GCCTCAGCACTGCTTCTGCTCGATCGCCCGGTTCAGAGAGTCGTACCACG
TGGTGCCCTTCGCGAACATGTCGGCAAGTATAAGTCGATTTAACCTCGGT
TTGACGGAGGCGGTGAACCTGGTGGATCACATGCGGAGGCCTTCCCCGGA
CCGTGCGGAGCTGCTGAGGGAGTTCATAGTGAAGCGGTTCAGCAGCAACC
AGGACGCGAAGGCGCAGGGTGCCACCAGCAAGAGGGAGAGGTACTTCTCG
AAGGAGGCGCTGGACGTCATCAAGATGGTGTACGGCAAGGACTACTCTCT
CTTTGGCGAGTACTTCGAGGAGCACTCCGCTTCAAGGTTGCAATAG
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