mRNA_Ecto-sp6_S_contig83.17494.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig83.17494.1
Unique NamemRNA_Ecto-sp6_S_contig83.17494.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig83.17494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig83contigEcto-sp6_S_contig83:161851..162474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size615
Hectar predicted targeting categoryother localisation
Exons2
Cds size564
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350460.9092143-UTR-Ecto-sp6_S_contig83:161850..1619011682350460.9092143-UTR-Ecto-sp6_S_contig83:161850..161901Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig83 161851..161901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350460.9175894-CDS-Ecto-sp6_S_contig83:161901..1620251682350460.9175894-CDS-Ecto-sp6_S_contig83:161901..162025Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 161902..162025 +
1682350460.9254088-CDS-Ecto-sp6_S_contig83:162034..1624741682350460.9254088-CDS-Ecto-sp6_S_contig83:162034..162474Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig83 162035..162474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig83.17494.1prot_Ecto-sp6_S_contig83.17494.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig83 161902..162474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig83.17494.1

>prot_Ecto-sp6_S_contig83.17494.1 ID=prot_Ecto-sp6_S_contig83.17494.1|Name=mRNA_Ecto-sp6_S_contig83.17494.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=188bp
MRGKARHPGPKRRRPVSCEHANTQNSIRNARAPPTGSSNNTTSQPASRRS
MHTILCKRSSVQSASLRRPAFSCPWAVSLSLSPTTCHAAYVWLESRAHAR
IGIQQTRRTEKGGDPSATRHKEQTTPAHVECEALDTNKAGGVGFGRTVTA
SPTHKQLATSFSIESCQSGDSKATIKPPPPTHPPPQK*
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mRNA from alignment at Ecto-sp6_S_contig83:161851..162474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig83.17494.1 ID=mRNA_Ecto-sp6_S_contig83.17494.1|Name=mRNA_Ecto-sp6_S_contig83.17494.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:161851..162474+ (Ectocarpus species6 EcLAC_371)
TACGCTGTTCTCCGTGGTCAATTTTTGTCTGTGTAGACCCCAGTGGGGTC
AATGAGAGGCAAGGCAAGACACCCGGGACCCAAGCGCCGCCGCCCCGTAT
CGTGCGAACACGCCAACACACAAAATTCGATACGGAACGCGAGGGCGCCG
CCCACCGGCAGCAGCAACAACACCAGCCAGCCAGCCAGCCAGCCAGCCAG
CCGCCGTTCAATGCACACGATTCTTTGCAAGCGCTCCTCTGTGCAGTCAG
CCAGTCTAAGGAGGCCTGCTTTTTCTTGTCCATGGGCTGTCTCTCTCTCT
CTCTCTCCAACCACCTGCCACGCCGCCTACGTCTGGTTGGAGTCTCGGGC
CCATGCAAGAATTGGGATTCAGCAAACAAGACGAACAGAGAAGGGAGGGG
ACCCATCCGCAACAAGACACAAGGAGCAGACAACGCCCGCGCATGTCGAA
TGTGAAGCGCTCGACACAAACAAGGCCGGTGGCGTGGGCTTTGGCCGTAC
CGTAACAGCGAGTCCCACACACAAGCAGCTAGCAACGTCCTTCTCCATCG
AGAGCTGCCAGAGCGGTGACTCAAAAGCTACCATCAAGCCACCCCCACCC
ACCCACCCCCCTCCTCAAAAATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig83:161851..162474+

>mRNA_Ecto-sp6_S_contig83.17494.1 ID=mRNA_Ecto-sp6_S_contig83.17494.1|Name=mRNA_Ecto-sp6_S_contig83.17494.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp6_S_contig83:161851..162474+ (Ectocarpus species6 EcLAC_371)
ATGAGAGGCAAGGCAAGACACCCGGGACCCAAGCGCCGCCGCCCCGTATC
GTGCGAACACGCCAACACACAAAATTCGATACGGAACGCGAGGGCGCCGC
CCACCGGCAGCAGCAACAACACCACCAGCCAGCCAGCCAGCCGCCGTTCA
ATGCACACGATTCTTTGCAAGCGCTCCTCTGTGCAGTCAGCCAGTCTAAG
GAGGCCTGCTTTTTCTTGTCCATGGGCTGTCTCTCTCTCTCTCTCTCCAA
CCACCTGCCACGCCGCCTACGTCTGGTTGGAGTCTCGGGCCCATGCAAGA
ATTGGGATTCAGCAAACAAGACGAACAGAGAAGGGAGGGGACCCATCCGC
AACAAGACACAAGGAGCAGACAACGCCCGCGCATGTCGAATGTGAAGCGC
TCGACACAAACAAGGCCGGTGGCGTGGGCTTTGGCCGTACCGTAACAGCG
AGTCCCACACACAAGCAGCTAGCAACGTCCTTCTCCATCGAGAGCTGCCA
GAGCGGTGACTCAAAAGCTACCATCAAGCCACCCCCACCCACCCACCCCC
CTCCTCAAAAATGA
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