mRNA_Ecto-sp6_S_contig82.17481.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 3.690e-158 Identity = 284/488 (58.20%), Postives = 313/488 (64.14%), Query Frame = 1
Query: 1 LVFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTEGTWTLITSTSC*RSR*YRRWCSPSVSASCWRLRQHSDFQTVFRTSCSVRHGARWRIQDLRRPETW--GACESTW*RRHHRPLKQVLR*PQEHLHTL-LRRSEGY*QVQEQGCAGPVLPRA-LDFQKWGCGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPQDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNLYAVYADANFPFPPNRMSTSAPSFNVQRGVPLLRLVTLRLYQALLHPGREPAHLSSPARVLRHD---SLRGCGC-------VLSLASSCSQREGGRRRGD----PRPRPTG*GGTNDTSSDHEMDDSSERA 1410
L FKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTE + + P + L F R S + AR ++ D P+T G L ++++TL +G + + + + G GERC+KLFIGKQPGTTAGVEGAFTPDGVMYANVFQI AESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLP+DADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDN+YAVYADANF P Q V L+ A G + + LS L + SL GC V+++ S+ R + D P P GGTNDTSSDHEMDDS + A
Sbjct: 6 LFFKCGSDVDLARFVPLVPPVTCPLAGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTERHVDTDHQHQLLKISMISKMVFPKRVR--FVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVVVDNIYAVYADANFSLP------------AQPHVNFGALLQRSARSATAEVG-DTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRAVNAKADDGGAIPGLVPPDEGGTNDTSSDHEMDDSHQSA 478
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 164 bits (414), Expect = 9.120e-41 Identity = 80/124 (64.52%), Postives = 93/124 (75.00%), Query Frame = 1
Query: 649 GCGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPQDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPS 1020
G GERC+KLF+GK GTTAGVEG FT DGV FQ+T ESAAD VD+ AH LV P L+ITDIPC + PIAERL P LL++ G LP+DA+G V L LQH+GAHA+EFPDEH VK P FP+
Sbjct: 5 GEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPT 128
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 150 bits (379), Expect = 1.070e-35 Identity = 104/333 (31.23%), Postives = 151/333 (45.35%), Query Frame = 1
Query: 82 SRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTEGTWTLITSTSC*RSR*YRRWCSPSVSASCWRLRQHSDFQTVFRTSCSVRHGARWRIQDLRRPETWGACESTW*RRHHRPLKQVLR*PQEHLHTLLRRSEGY*QVQEQGCAGPVLPRALDFQKWGCGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPQDADGVVSLPALQHLGAHAHEFPDEHSVKFPTE--SFPSPPPSSATDVVVDNLYAVY 1074
++ I DHNFI +++ Y+AFE LTQHP++F SY +G PE+++IDGCAK+ +D+ + F AR E R+ D+ + H LL+ S GC + AL + +RC+K+FI + G TAGVEG FTPDGV+ +++ Q+ + + PS+++TDIPCM+AP AE+ P LL+N G LP++A G VSLP LQH+GA +++PD H V+ P +F S SS V Y VY
Sbjct: 4 AKLIRDHNFIAAIRDAYFAFEGLTQHPFDFVSYLYGHCPELMSIDGCAKVISDDATLAHFDQARQE------------------------------------------------------RLVDI-----------------------------DLGHQLLKMSMISKMEDFIGCFQQLWRFALGPDE---ADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVY 250
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE) HSP 1 Score: 118 bits (296), Expect = 2.160e-26 Identity = 92/250 (36.80%), Postives = 119/250 (47.60%), Query Frame = 1
Query: 88 SIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTE--------GTWTLITSTSC*RSR*YRRW---CSPSVSASCWRLRQHSDFQTVFRTSCSVRHGARWRIQDLRRPETWGACESTW*RRHHRPLKQVLR*PQEHLHTLLRRSEGY*QVQEQGCAGPVLPRALDFQKWGCGERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAH 804
SI DH F +KE Y+AFEAL QHP+ F S+ GR+PEI IDGCAKI TD+ QF IAR E ++ S + RW +P + + D + R ++ GA + D +++G LK + R +G + L + + G GERC KLFIGK G+TAGVEG FT DGVM A+VFQITAES ADAVD+ H
Sbjct: 14 SIEDHKFHALIKEAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDIARVERDVDANLYNEMLKMSMISKMVFNAHLRWVLEAAPIFGPTPVGSPEDGDAGELMR---ALGDGAITDLSD----KSFG------------DLKNIYR-------LCFPDGKGISMYPTKELLAQCLQKLWELAD-GEGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVH 236
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE) HSP 1 Score: 116 bits (291), Expect = 2.510e-25 Identity = 103/294 (35.03%), Postives = 131/294 (44.56%), Query Frame = 1
Query: 1 LVFKCGSDVDLARFVPLVPPVTCPL----------AGSRSIADHNFIETLKECYYAFEALTQHPYEFKSYEWGRFPEIVTIDGCAKINTDNTDTSQFQIARTEGTWTLITSTSC*RSR*YRRWCSPSVSASC-------WRLRQHSDFQTVFRTSCSVRHGARWRIQDLRRPETWGACESTW*RRHHRPLKQVLR*PQEHLHTLLRR----SEGY*QVQEQGCAGPVLPRALDFQKW-GCGERCAKLFIGKQPGTTAG-VEGAFTPDGVMYANVFQITAESAADAVDVSAHFLV 813
L F D +P+ P +T P+ SRSI DHNF +K+ Y+AFEAL Q P+ F S+ GR+ EI IDGCAKI TD+ QF IAR E + S+ + W L F R S + AR R+ + PE A E + + P L + R +G + L + + G GERC+KLFIGK G+TAG VEG FT D VM A+VFQITAES ADAVD+ H LV
Sbjct: 22 LKFVFCLTCDAQNLLPVYPSLTLPIDSLLPRLPRVPSSRSIEDHNFHALIKQAYFAFEALVQ-PFGFVSFMRGRWREIFCIDGCAKICTDDVSREQFDIARAERDVDADL---------HNEMLKMSIISKMGFNARLRWVLEAAPIFGPHNRVSNVMYRTARGRMAPVGSPENGDAGELMR-ALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLV 304
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5JV99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV99_9PHAE) HSP 1 Score: 102 bits (254), Expect = 3.190e-20 Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 811 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPQDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVV-VDNLYAVYADANFP 1092
V P L+ITDIPC+LAPIA++ HP LL+ G LP+ A+G VSL LQH+GA A +FPD HSVK P FPS SSA V N+YAVYA A P
Sbjct: 15 VQPCLVITDIPCVLAPIADKNHPDLLDEGGALPRSAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALGAQPVHNVYAVYAAAEPP 109
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5KLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN2_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.220e-19 Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 1
Query: 811 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPQDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVV-VDNLYAVYADA 1083
V P L+ITD PCMLAPIA++ HP LL+ G LP++A+G VSL LQH+GA A +FPD HSVK P FPS SSA V N+YAVYA A
Sbjct: 15 VQPCLVITDTPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALGAQPVHNVYAVYAAA 106
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE) HSP 1 Score: 100 bits (248), Expect = 4.580e-19 Identity = 65/151 (43.05%), Postives = 85/151 (56.29%), Query Frame = 1
Query: 658 ERCAKLFIGKQPGTTAGVEGAFTPDGVMYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLA-PIAERLH-----PWLLENEGRLPQDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPS-SATDV----VVDNLYAVYA 1077
ERC+++FIGK G T GVEG F DGV+YA VFQ+ ESAAD VD+ +H T +P P+ + H P G LP++A+ V L LQH+GA A+EFPD + V+ P FPSP + SA+D V +YA YA
Sbjct: 128 ERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISH-----RQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYA 273
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 101 bits (251), Expect = 5.540e-19 Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 811 VPPSLMITDIPCMLAPIAERLHPWLLENEGRLPQDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVV-VDNLYAVYADANFP 1092
V P L+ITDIPCMLAPIA++ HP LL+ G LP++A+G VSL LQH+GA A +FPD HSVK P F S SSA V N+YAVYA A P
Sbjct: 15 VQPCLVITDIPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFTSATASSALGAQPVHNVYAVYAAAEPP 109
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 7.080e-16 Identity = 43/72 (59.72%), Postives = 54/72 (75.00%), Query Frame = 3
Query: 279 RHVDTDHQHQLLKISMISKMVFPKRVRFVLEAAPTFGFSNRISNLMFRTARGKMADPGSPQTGDLGSL*KHL 494
R VD D +++LK+SMISKMVF R+R+VLEAAP G NR+SN+M RTARG+MA GSP+ GD G L + L
Sbjct: 78 RDVDADLHNEMLKMSMISKMVFNARLRWVLEAAPILGPHNRVSNVMHRTARGRMAPVGSPENGDAGELMRAL 149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig82.17481.1 >prot_Ecto-sp6_S_contig82.17481.1 ID=prot_Ecto-sp6_S_contig82.17481.1|Name=mRNA_Ecto-sp6_S_contig82.17481.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=205bp MYANVFQITAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLback to top mRNA from alignment at Ecto-sp6_S_contig82:805247..807699- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig82.17481.1 ID=mRNA_Ecto-sp6_S_contig82.17481.1|Name=mRNA_Ecto-sp6_S_contig82.17481.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2453bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:805247..807699- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:805247..807699- >mRNA_Ecto-sp6_S_contig82.17481.1 ID=mRNA_Ecto-sp6_S_contig82.17481.1|Name=mRNA_Ecto-sp6_S_contig82.17481.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:805247..807699- (Ectocarpus species6 EcLAC_371)back to top |