mRNA_Ecto-sp6_S_contig82.17480.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17480.1
Unique NamemRNA_Ecto-sp6_S_contig82.17480.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A6H5K7Y7_9PHAE (Signal peptidase complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Y7_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 1.420e-122
Identity = 188/197 (95.43%), Postives = 191/197 (96.95%), Query Frame = 1 
Query:   91 MDEDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILATARSSSRSMGKGIFVRTDFPRFDEIFTVSAEERKPGSKPIEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRLEKRARDKKKXXXXXXXXXXKSK 681
            MDEDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCC SYF CSFGLHLIVTYWEKDLILAT RSSSRS+GKGIFVRTDFPRFDEI+TVS EERKPGSKPIEEQW+VGKYFDYEGNFDEWGMGDAVK LVTRLEKRARDKKKXXXXXXXXX KSK
Sbjct:    1 MDEDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCFSYFTCSFGLHLIVTYWEKDLILATKRSSSRSLGKGIFVRTDFPRFDEIYTVSVEERKPGSKPIEEQWHVGKYFDYEGNFDEWGMGDAVKNLVTRLEKRARDKKKXXXXXXXXXKKSK 197
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: K8YV93_NANGC (Signal peptidase complex subunit 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV93_NANGC)

HSP 1 Score: 165 bits (417), Expect = 3.100e-45
Identity = 85/181 (46.96%), Postives = 124/181 (68.51%), Query Frame = 1 
Query:  100 DELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILATA--RSSSRSMGKGIFVRTDFPRFDEIFTVSAEERKPGSKP-IEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRLEKRARD 633
            DE   P  ++TGD +K+KQ++D+AV+KA+++ GYEE+   +N KLA+M +ACVFA+ AQF+P PFPESR LL VCC++YF  S  + LIV+Y E+D IL T   RS  ++ G+ + VRT FPRF + +TV  EE      P +  ++++GK FD EGNF E G+   V++L+ R +K+  D
Sbjct:   13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA-GEALKVRTQFPRFQDEYTVFVEEAGMQDPPTVSSKFSIGKVFDEEGNFYEEGLAREVQRLLDRYKKQMWD 192
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A8J2SMV2_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMV2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 9.510e-43
Identity = 78/168 (46.43%), Postives = 114/168 (67.86%), Query Frame = 1 
Query:  118 QSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLH-LIVTYWEKDLILATARSSSRSMGKGIFVRTDFPRFDEIFTVSAEERKPGSKPIEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRLE 618
            Q ++TGD++K+KQI+D+A +KAVL  GY+E H ++N K+++M +AC+FA  AQF P PFP+ R +L VCC  YF  S G+H L+V Y E+D++L T   ++     G+ VRTDFP+F ++FT+  E   P + P EE+  VGK+FD  G F E G  D V+K+V + E
Sbjct:   18 QHIDTGDSLKVKQILDEATVKAVLAKGYDEVHFIDNLKISLMIIACLFACAAQFNPIPFPKVRPILGVCCGGYFVFS-GIHQLVVKYVERDIVLITKPKNAEH---GLRVRTDFPKFQDLFTIIVEYDTPDAPPYEEKHCVGKFFDTGGYFWEAGFADTVQKMVAKFE 181
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A7S1Y7Q9_9STRA (Signal peptidase complex subunit 2 n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7Q9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.730e-40
Identity = 84/179 (46.93%), Postives = 111/179 (62.01%), Query Frame = 1 
Query:  124 VETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILATARSSSRSMGK-------GIFVRTDFPRFDEIFTVSAE-ERKPGSKPIEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRLEKRARDK 636
            V+ GD +K+KQI+D+    AVLE   +ED  L+N KLA+M LAC+FA  AQF P PFP+SR +L +CC  YF  S  L  IVT+ +KD IL T  + +R+          GI VRTD PRF E + V  E E+ P +  + + W+VG +FD +G FDE GM +AV+ L  RLEK   DK
Sbjct:   31 VDVGDVIKLKQILDETTSAAVLEFQ-KEDFRLDNMKLAIMTLACLFACLAQFAPIPFPDSRPVLGICCCIYFVLSGVLQAIVTFLDKDCILITKPTDARAQKSNPNLHQYGIRVRTDLPRFSEYYKVILEFEKMPNTVKVVQTWSVGNFFDVDGYFDEIGMTEAVQGLYKRLEKGEYDK 208
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A7R9Z7Z3_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z7Z3_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.360e-39
Identity = 91/221 (41.18%), Postives = 131/221 (59.28%), Query Frame = 1 
Query:   19 TATDDRLPEHT*TEDKRSFKSVEEMDEDEL--------IVPQSVETGDTVKMKQIMDDAVIKAVLEM-GYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILAT-----ARSSSRS-MGK-GIFVRTDFPRFDEIFTVSAE-ERKPG---SKP-IEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRLE 618
            T T D +P       +   K  +E DEDE         I    V+ GD VK+KQI+D+ V    L+     EDHT++N KL++MALAC FA+ AQF P PFP+SR +L  CC +YF  S  L L+ T+W+KD I+ T     A++   S M K G+ +RT  PRF E +TV  E ++K G   ++P ++E W+VG++FD EG FDE+G+ + +++L  R E
Sbjct:    9 TVTADAVPAS-----ESEVKKAQEADEDEEGSEDDASEIELLQVDVGDVVKLKQILDETVAGTFLDKCSLVEDHTVDNIKLSIMALACTFAMVAQFAPLPFPDSRPVLGGCCAAYFVLSGFLQLVTTFWDKDCIMVTKAVEKAKNQKNSDMEKYGLRIRTSLPRFSEFYTVIIEFQKKYGDGENRPYVKETWSVGQFFDVEGMFDEYGLENEIEELYERFE 224
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A7S3V7R4_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7R4_9STRA)

HSP 1 Score: 148 bits (374), Expect = 8.570e-39
Identity = 83/199 (41.71%), Postives = 116/199 (58.29%), Query Frame = 1 
Query:   91 MDEDELIVPQSVETGDTVKMKQIMDDAVIKAVLE-------------MGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILAT---------ARSSSRSMGKGIFVRTDFPRFDEIFTVSAE-ERKPGSKPIEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRLE 618
            ++E+E +V   V+TGD +K+KQI+D+ V    LE             +G  EDH L+N KL +MA+AC FA+ AQF P PFP  R +L VCC  YF+ S  L LI T+ +KD IL T          +++      G+ VRT FPRF E +TV  E E    S  +++ W+VG++FD EG FDE+G+  AV+KL  + E
Sbjct:    8 VEEEEEVVLLQVDTGDIIKLKQILDETVANTFLEENTLEGHDSRAKNIGLHEDHRLSNIKLILMAVACAFAMVAQFSPLPFPNCRPILGVCCAVYFSLSGVLQLITTFLDKDCILITKALEGKPAVVKNNPNLAKYGLRVRTIFPRFSEFYTVRIEFEGLENSPFVKDTWSVGEFFDKEGMFDEYGLQYAVEKLYRKFE 206
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A7S3M684_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M684_9STRA)

HSP 1 Score: 145 bits (367), Expect = 6.980e-38
Identity = 75/168 (44.64%), Postives = 108/168 (64.29%), Query Frame = 1 
Query:  115 PQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILATARSSSRSMGKGIFVRTDFPRFDEIFTVSAEER-KPGSKPIEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRL 615
            P ++ETGD+VK+KQ++DDA IKA+ E GY+ +++ +N KL +MAL+CVFA+ AQF+P PFP SR LLAVCC +YF  S  L  I+T+ +KD IL      S+     + +RT FPRF E FT+  + +  P  K    +  VG+YF  +G FDE    + V++ V + 
Sbjct:   31 PFTIETGDSVKVKQVLDDAAIKAITEGGYDANYSWDNMKLLLMALSCVFAMVAQFFPIPFPASRPLLAVCCAAYFIISSVLQYIITFVDKDTILFV--KPSKECAHDMEIRTSFPRFQEYFTLIVQFKGNPNDKKTTAKMYVGRYFTEKGAFDEDAFINDVRRHVQKF 196
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A835ZBL5_9STRA (Signal peptidase complex subunit 2 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBL5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.320e-38
Identity = 79/197 (40.10%), Postives = 115/197 (58.38%), Query Frame = 1 
Query:  115 PQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILATARSSSRSMGKGIFVRTDFPRFDEIFTVSAE------------------------------ERKPGSKPIEE---QWNVGKYFDYEGNFDEWGMGDAVKKLV 606
            P  V+TGD++K+KQ MD+AV++AV++MG+EEDH  +N KL +M +AC FA  AQ +P+PFPESR +LAVCC+SYFACS  L ++++  E+D+IL T  ++    G  + +RT FPRF EI+T   E                               ++PG    ++   + NVG YFD EG   E G+ + + K V
Sbjct:   53 PSKVDTGDSLKVKQAMDEAVVRAVMDMGFEEDHKWSNVKLLLMVVACAFAGLAQLYPKPFPESRPVLAVCCISYFACSALLQVVMSCIEQDVILITKPNNK---GVALRIRTAFPRFQEIYTTEIEVLAGAASKHATKLQLELMPLITSFLPISIGRKQPGDAATKDGAVKMNVGNYFDVEGYXXEEGVVEDMAKAV 246
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: W7TQC5_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQC5_9STRA)

HSP 1 Score: 139 bits (350), Expect = 4.350e-36
Identity = 69/134 (51.49%), Postives = 97/134 (72.39%), Query Frame = 1 
Query:  100 DELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILATA--RSSSRSMGKGIFVRTDFPRFDEIFTVSAEE 495
            DE   P  ++TGD +K+KQ++D+AV+KA+++ GYEE+   +N KLA+M +ACVFA+ AQF+P PFPESR LL VCC++YF  S  + LIV+Y E+D IL T   RS  ++ G+ + VRT FPRF + +TV  EE
Sbjct:   13 DEEEEPLHIDTGDQMKVKQVLDEAVVKAIVDAGYEENFFYDNIKLALMVIACVFALIAQFYPMPFPESRPLLGVCCLAYFLASTIIQLIVSYVEQDTILTTQPLRSGGKA-GEALKVRTQFPRFQDEYTVFVEE 145
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BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Match: A0A7S2QZQ2_9STRA (Signal peptidase complex subunit 2 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZQ2_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.170e-36
Identity = 77/185 (41.62%), Postives = 110/185 (59.46%), Query Frame = 1 
Query:  124 VETGDTVKMKQIMDDAVIKAVLE------MGYEEDHTLNNAKLAVMALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDLILATARSSSRSMGK--------------GIFVRTDFPRFDEIFTVSAEERKPGSKP-IEEQWNVGKYFDYEGNFDEWGMGDAVKKLVTRL 615
            V+TGD VK+KQI+D+ V+ A+++      +   EDH L+N KL +M L CVFA+ AQF P PFP+SR +L  CC +YF  S  L L+ T+ +KD I+ T   SS  + K              G+ VRT  P+F E FTV  E +   + P +++ W+VGK+FD EG FDE+G+ + V+ L  R 
Sbjct:   51 VDTGDIVKLKQILDETVVAALVDSEEEDSLALSEDHGLDNIKLFLMTLGCVFAMFAQFAPLPFPDSRFVLGACCATYFLISGVLQLMTTFLDKDCIMITKPVSSDIIKKHKMDASKNKDISKYGLRVRTQLPKFSEFFTVILEFQDMDNTPFVKQTWSVGKFFDVEGMFDEYGLVEQVEMLFRRF 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7Y7_9PHAE1.420e-12295.43Signal peptidase complex subunit 2 n=2 Tax=Ectocar... [more]
K8YV93_NANGC3.100e-4546.96Signal peptidase complex subunit 2 n=2 Tax=Monodop... [more]
A0A8J2SMV2_9STRA9.510e-4346.43Signal peptidase complex subunit 2 n=1 Tax=Pelagom... [more]
A0A7S1Y7Q9_9STRA1.730e-4046.93Signal peptidase complex subunit 2 n=2 Tax=Grammat... [more]
A0A7R9Z7Z3_9STRA5.360e-3941.18Signal peptidase complex subunit 2 n=1 Tax=Pseudic... [more]
A0A7S3V7R4_9STRA8.570e-3941.71Signal peptidase complex subunit 2 n=1 Tax=Chaetoc... [more]
A0A7S3M684_9STRA6.980e-3844.64Signal peptidase complex subunit 2 n=1 Tax=Spumell... [more]
A0A835ZBL5_9STRA9.320e-3840.10Signal peptidase complex subunit 2 (Fragment) n=1 ... [more]
W7TQC5_9STRA4.350e-3651.49Signal peptidase complex subunit 2 n=1 Tax=Nannoch... [more]
A0A7S2QZQ2_9STRA6.170e-3641.62Signal peptidase complex subunit 2 n=1 Tax=Eucampi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:785214..792870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score372.9
Seed ortholog evalue9.5e-101
Seed eggNOG ortholog2880.D8LDY7
Preferred nameSPCS2
Model size1268
KEGG koko:K12947
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0019538,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:1901564,GO:1902494,GO:1905368
Exons7
EggNOG free text desc.signal peptide processing
EggNOG OGsKOG4072@1,KOG4072@2759
Ec32 ortholog descriptionProbable Spc2 homolog, Subunit of Signal Peptidase Complex
Ec32 orthologEc-23_003280.1
Cds size594
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17480.1prot_Ecto-sp6_S_contig82.17480.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 785304..792286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350460.6661215-UTR-Ecto-sp6_S_contig82:785213..7853031682350460.6661215-UTR-Ecto-sp6_S_contig82:785213..785303Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 785214..785303 +
1682350460.7494047-UTR-Ecto-sp6_S_contig82:792286..7928701682350460.7494047-UTR-Ecto-sp6_S_contig82:792286..792870Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 792287..792870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350460.6801944-CDS-Ecto-sp6_S_contig82:785303..7853071682350460.6801944-CDS-Ecto-sp6_S_contig82:785303..785307Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 785304..785307 +
1682350460.6893992-CDS-Ecto-sp6_S_contig82:787444..7875331682350460.6893992-CDS-Ecto-sp6_S_contig82:787444..787533Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 787445..787533 +
1682350460.700536-CDS-Ecto-sp6_S_contig82:788103..7882521682350460.700536-CDS-Ecto-sp6_S_contig82:788103..788252Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 788104..788252 +
1682350460.711124-CDS-Ecto-sp6_S_contig82:789194..7892731682350460.711124-CDS-Ecto-sp6_S_contig82:789194..789273Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 789195..789273 +
1682350460.7195363-CDS-Ecto-sp6_S_contig82:790269..7903811682350460.7195363-CDS-Ecto-sp6_S_contig82:790269..790381Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 790270..790381 +
1682350460.7279654-CDS-Ecto-sp6_S_contig82:791106..7912421682350460.7279654-CDS-Ecto-sp6_S_contig82:791106..791242Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 791107..791242 +
1682350460.7364163-CDS-Ecto-sp6_S_contig82:792261..7922861682350460.7364163-CDS-Ecto-sp6_S_contig82:792261..792286Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 792262..792286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17480.1

>prot_Ecto-sp6_S_contig82.17480.1 ID=prot_Ecto-sp6_S_contig82.17480.1|Name=mRNA_Ecto-sp6_S_contig82.17480.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=198bp
MDEDELIVPQSVETGDTVKMKQIMDDAVIKAVLEMGYEEDHTLNNAKLAV
MALACVFAVTAQFWPQPFPESRALLAVCCVSYFACSFGLHLIVTYWEKDL
ILATARSSSRSMGKGIFVRTDFPRFDEIFTVSAEERKPGSKPIEEQWNVG
KYFDYEGNFDEWGMGDAVKKLVTRLEKRARDKKKKEKKEKSESKKSK*
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mRNA from alignment at Ecto-sp6_S_contig82:785214..792870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17480.1 ID=mRNA_Ecto-sp6_S_contig82.17480.1|Name=mRNA_Ecto-sp6_S_contig82.17480.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7657bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:785214..792870+ (Ectocarpus species6 EcLAC_371)
GCGAGCCAGGCACACAGCACAGCAACGGACGACAGGTTACCGGAGCACAC
ATAGACCGAGGATAAGCGATCGTTCAAGTCCGTGGAAGAGATGGGTGAGT
AGACATCCCTCTGATTGTTTTCATGGTGCTGCCCGCAGCAGAGAGGAAAC
AGGGCCAGTGTTGCAGTCTGGTTACCGGCAATGCAATGTAAACGTGCGAT
GGTCGTGACACTTGGAAGCCTCGTCGTGCCGCACTGCTTCTGGCATCGCT
GTGCTCTCCCGATGTTGTAGATTGGTGGTGCAGCAGCAGAGTGATCATAT
TCAAGTGTGCGAGTAGGGGTGCAGCATGCAGAGGCCGCGCGTTGGGCCTA
CTTGCGAGTCGTACAACAAACAATAACAAGAGGTTGCAGCCGGTCTCCTG
CGAGCAGATCACGCCGCCGCGGATCGTACGGCAAAGTCACACACAAGCCG
TGCCTGCTGTCTGCTTGCTGCAAGCCTGGAAAGTTGGTGAGAAGCTGTGG
CAGCAGTAGTCCCGCGATGCAGTCTCCTCTGCAATAGGCCATCGAGCAAG
ATGATGCCGAACCTGCCCCTTGGCCGGGTTTGTGAGTCGTGAGTCGCGGG
CGCCGGTATGAATGTCAATATAATGGAAGATAGCACCCTCTGCAGCTGCG
TACACTCACGGATGCTTAGCGAGTGTCAGAGTGCGACTTTGGTGCTTGAA
AATGTACACCCGGAAAATATTATCGCTCGGGTTGTTTCTCGTGGCATTAC
TGCCTTTCTCTGCTTTGTCATGCGCAGCAATAGATTGCTGGCTCAGTTGT
TGTGTAGTATTGGTCCGCTCTTTCTTTTTCTTTGATACAACGCGTTTCGC
CCGGGGCAAGCAGGGTTGGCCCAGGAGAGAAAATTGAAAATAGCAACGAT
TTCCTGAACGCATGTGCACACGGCGTCGCTTTAAGGCCAGCTTGCCAAGG
CAGAGTCAAACTTCGTTCGCTATGCGTAGACGTTCAACACGAAACTGCAT
CGTGAAGCAGTACGGGATAAGAGCCCACCCCCCCACGCCATGATATACGC
GGCAGCAGCAGCAGCAAGGCGCAGAGAAACAGCACCAAGGAGACCTCGCT
GGATGCGCACGCAGCTTTTTTCTTGCGCACCCTCTGCTATTTGTTTTATC
TTGTTGCTGTGTTACCCCGCCTGGCGTGTCGAAACATTTTTATACCCAGC
GCACAGGGGTGCGAGCGATTTTCAAAGCGTAATTTCTCCACAACCAGGAG
GTTTCCACTGTCGAATAGGGCGGTTTTGGAAACATCTCATCGAGAGTATC
CGTTGGCGCTCGCACCCTTCTGGTTGTGGAGAAATTACGCTTTGAAAATC
GATCGCACCCCTGTGCGCTGACTCGCAACCTTACGGTACATACTCCAAGA
GATTACGAGACCTCCCTCCGGAGTGGGCAAAGAGAGCACCGCGGCAGGGG
GTGATGCAAGAACATGCTAAACACAAACAGAGGGAATACAAACATGTATA
TATATACACACTGCTCCAACCAACATCCCAAAGGAAAAAAATCAGCACAT
CTGTAGTGCTGCAGCCCAAAGAAAATTCTTGAGGTGCTTGAGAAAGACTG
TAGAAATCAGTACCATCCGAAAAGTGCAGACCGGCGCCCAGAATAGGACG
AAAAATATCACAAGCACCCTGTGTTTCGCACACCACCTAACGAAAGCAAT
GCGGTACTACGGTGCACACGAGCTGTCGCAAACAACAATTTACCTTGGTC
AAGTCGGTTTTTTACGTTGTGTGGAACTTTAGGGCAAAGATGCGGGTGTC
CGATGAGGAACCGGGTTGTGCGCCATGTTCCATTAGCCCTTTTCCCGGCA
AGACTCGAGATGCTTCTCACATGGAAGTATTGATAAATCGCTGAGAGACA
AACAACACGCACCGACCGCTTACTATATATGTGGCGTCCCCAAAACTTGA
GCTTACAAATCACTATAATTAAGAGCGAAGAGCACAAATTGTGCGCTGTG
GAAGGGTTTGTGGTAATTGTTAACTGTGCGTGTCAGGCAGAAAGAAAAAG
AAGAGAGAGAGAAAGTTGTCTCGCCGTCTGCGGGCTTCCTACCTTTTCCC
TTGGCTGCTGCTCTTGCTCCCCCCCTCCCTGACTCTGTATTTCCCGATTG
TCATCGGCTGCTGCTCCTTCCCCCCCCCTCCTGATTCTTCGTGTTTTCCC
GTTGTTTTCGGCTGCTGCTCGCTGGGTGCAGACGAGGATGAGCTCATCGT
GCCGCAGTCGGTGGAGACTGGGGACACGGTCAAGATGAAGCAGATCATGG
ACGATGCCGTCATCAAGGCCGTGAGTGCGAATTTGCCAACTGTAGAGCAC
GCTCGAATAAGAAGCGGGTGGTGGGCGCCCAACAAGAACGCCGTTACCGT
GTACGACACAAGATAACACACCCCCTGGACAGATTTTCAAAGCTCAATCA
ATCCACGACAAAGAAGATGCATAAACGAAACGATACATTTTCGGAAATCT
CTCGCTGCGCACCGGGGTGCACTCATGAGAACCGACACAACCAGAGGCTC
TTGGGTGGTGGCGTCTGCTGTACCGTGGCATACCGGAACTGCTGCCGGGT
TACTGAACCCCGCACTAATAATTTAGTTGGTTGTGTTTTATGTTTTGGTT
GTTTTTTATTTTTCAGATTTGTATATTGTATTTCTGAAGTTATAATACGT
TTGTTGTTGTTTGTTTTTGTTTTCGGTAGTTCGTATTTTTCAGGTTTTGG
GGACGCAGCATAGCTTACCAGGTACATGAAAAGCCGTTACCAGGGTTGGG
TTGCTAGCCCATAGCAGTGACAGTAAGAAACGGACCTCGAACAAAAACCA
GAGGTTTTTATATGGTGGCGCCTGCTGTACCGGCGAACAGGTGCTGGAGA
TGGGGTACGAGGAGGACCACACCCTTAACAACGCCAAGCTGGCCGTGATG
GCCCTGGCGTGCGTCTTCGCAGTCACGGCGCAGTTCTGGCCGCAGCCCTT
TCCGGAGAGCCGAGCCCTCCTCGCAGTCTGCTGCGTCAGGTGTGTGCGGG
TGTGTAAAGGATTATGTGTGCCCGTACTAAATCCTGGCATACAATCAAGC
ATCATTTGTTTCCAGCCGACTGACCAATGGAATGAGGTCAGTCTCAGTGC
GGTGGAAACACAAAATGCTTCTGAAGGTCACAACCTGGGACCCTGTGATC
TAGCGTCATCGGGGAGCCTACGCTACTCTCTGGCTTAAAGACAAATACCG
TAGCAGTTTAATTATTTTAATTACTCTCTCTTGAGGTGCATTGTCTGGAG
GTGAGCATGCAAAAGCACACTGCACGTGTTTGCCATGGCTGCAGCTACTT
TTGGACAGTGTGTGTTTGTGCCTGTGTTTCTTTGCTTAGCGTCAACCGCC
CTAGCCGCCGTCTGCTGCGCTAGGTGTGTGTGTCGTGTTTTGTGTGTACT
TATGATGGGTATCGATCGCGCTAACCGCCTGCTGGGCAATGAAGAGATGT
CAGTCTCATTGCCACCGAAAACAGAAAATGATTCTAGAGGCTGTGTGTGT
GTTTGTAACTGTCGTTGTGCTTTTCCTTTCGTGTTTGTTCTCGACGCTCT
TCCCGATCTCCTCGCTCGATAGTTGTTTGGTCTTTCTCAGTCAGTCTGTC
TGTCTGTCTCTGTCTCTCTCTCTATCTATCTATCTATCTATCTGTACGTC
TGTCTGTTTGTCTTCCTCTCTATACCTGTCTTGTGTGTTTCTATCTCTAG
TCTGCCCTGTTGTCTGTCTTGCCATCTTTCTGCCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCATGCCTGATACGCCCCCGCTGAAGAAGTTA
CGAGCAGTGCTGGTTTTCGCCACTTTGTAGTATATGGGTAACCATGAACG
TTTCCGTACCAAAGGTTGCGTTAGCAGCAACTCCCCCCCCTCCCCCTCCC
CGTCGTTGTCGGGTTGTGTATGTTTTGACAGCTACTTCGCCTGCAGCTTT
GGTCTGCACTTGATTGTCACCTACTGGGAGAAGGACCTCATTCTCGCCAC
CGCAAGAAGCGTGAGTTTCATCGCCCGATAGTAACCGTAGGTGACATGAC
GCAAGATATCACACACCCCGGACTGATTTTGATTGCTCCGCAAGCGGAAA
GAGTGATGGTGCCGTGAAATGGCGGCGTTGAGACCGTCTCGTCCAGAGGT
TTCCGAAAGCGTATCGTTTGATTGATGCATCCTCTTCTTCGTAGCGTAGT
CGAGCTTTGAAAATCGGTCCAGAGTGTGTGTGATAGCTCATGTCACCTAC
GGCGTACGGCTCTCTTTCCGAGGCGTCTTCCCCGTTCTTCATTTTTTCCC
GTGTTCGCTAGCTACAGTGGTCGTCGTCGATGGGAGAAGGCGCAGATCGC
TGAGTCGTTCGTGCGACAGCGTCGGAGACATGCCTGTCAAGGAAAGAAAT
TGCCCAGTAGCTACGATAGCATTCGCGAAGATAATAATCTTAAGCTTTGT
TTCGTAATAGGTGTTGCGGGTGAGGGTTACTAGTATTCGAAATAGTATCC
TCGTGACGCGAGTGACGGAGAGGGGGGCAGGCAGATCGGAGCCAATTTCC
GTTGGAACCCGGCCGTAGCCCTGCGAGAGTAGATGGAACGGGCAACGAAA
GTTGTGTCCCATGAGCTCTGAGGCTTGGTTGATTCAGGTTCTTAATCAAC
AAGTGACGAGGCAATATGAACACTCCTTGCGTTTGGCGGAAAAGTATATC
AAGGTCGTTTGCTTTCGAGCTTTGTAGTTTTGATTGTTCTGCTCATGTGC
AACGGGTATGCATACAATGATGCTCGTTTGATTTCCTCTTGCCCGACCAT
TTGTCTATGTAAAACGCTTGGCAGCAGCTCGAAGGGTTAGAACTACAAGC
CTAGTCCATCCAACACTCCCAACACGACAACGAACCCAGGACATCTCAAA
TCGTTTTTGTGTTTGCTTTGTTGTTGTGTCTCTGACTTCCCCCCCACGCT
CCCGCTCCTCTTGGGCGTGTGTCCCGTTGTTGTGCTGCAATGAAAAACTG
CGACAGTCAAGCCGATCTATGGGGAAGGGGATCTTTGTGCGGACAGACTT
TCCTCGGTTCGACGAGATTTTCACCGTGTCCGCGGAGGAGAGGAAGCCGG
GATCCAAACCAATCGAAGGTCTGACCTCCATGCCGGTCTTGTTGTTGTTG
CTGTTGTTGCCGTTGTTGGTGATAGTGTGGGTAGTGTTGTTGTTGTTGCT
GTTGTTGCTGTTGTTGCCGTTGTTTCCGTTGTTGCTGTTGTTGGTGATGG
TGTTGGTGGTGGTGGTGGTGATATTGTTGTTCTTGGCTGTTGTTGTTGTT
GTTGGTGATAGTGTGGGTGATGTTGGTGTTGGTTGCTGTTGTTGTTATTG
CTGTTGTTGTCGTGCCTGTCGTTGGTGCTGTTGCTGGTGGTGCTGGTGCT
GCTTCTGCGGTTGCTTCAAGGTTGGCTCTTGTCTTGATTTTAGTTTGATG
TCATGCTCTTGTTGTTGTTGTGGTGTTGGTGCTGGTGGTGTTCGTTGTTT
GGTACACGGTAGCTCATGGCTTGCTTGGAACGCTTTCCCCCAAGGGGCGT
GATCCCGATAGAATCGAACGTGCACAAATGCACTTTCATATTATCTTGGC
AGTACATTATTTTTCGTGGCTGCTGGGAAGAACCCCCCCCCCCTCGTCCT
ATCGTTTGTAAAATTACGGACGCTGGACACGTGCATGATTTTCTTCTCAC
GTCGCAAAGAAAATGGTTTGACTGCAGCAAGCAATCATCATTTTTCATAT
CTCCGATTTTTTTGGGGGTTGCTGTGAAGAGCATTTGCGTCCCACTCTCA
CATAATACCTGTTCCCTTTTGTTCCTCTGCTGCTTGCCCCCAGAGCAATG
GAACGTGGGGAAATACTTTGATTACGAGGGCAACTTTGACGAGTGGGGGA
TGGGGGATGCGGTAAAGAAGCTGGTGACCAGGCTGGAGAAGCGCGCAAGA
GACAAGAAGAAGAAGGAGAAAAAAGAAAAGTGAGTGGGCGATGAGCAAGC
GAGGGAAGCGATTGTGTGCAGAGACGGCGTAATTTTTGCTCGGAACGTAA
GTCCGAGAGCTGTAAGTTGTCTTGTTGATGAAGCGTGAGGAGTGAATGTT
GAGAGAGGTGACGGGATTTTTCTCGGAGCGTGAGTCCGAGGGCTTGCGAC
TTTCTATTTTCGATGAACAAGGCGTGGATGAAAATGCGGAGAGAGGGAAA
AGTCTCTTCTCGGAAAGTGAGTCCGCGAGGCGGGTGACTTTCTATTTTCG
ATGAAGAAGTGTGCGTGATTGTGCAGAGCGACAACATCGTTTGTCTCGGG
ACCGTGCGCGCCGGGGCTTGTGACTTTCTATTTCGATGTAGAAAGAAGTG
TGCATGGTTTTGAAGAGAAACAATATCGTCCGTCTCGGAACGTGAGCGCA
GGGGCTTTTGACTTACTTTCTATTTTTTATGTGCGTGATTATTTATTTTG
CAGTCATCCTAACCCCGCTTTGAGGACATCCAAACTCATGACTCCTCCCC
GCTTTTAGGACAACTTTTTTTTTCTGTGAAGAAAAAACATGAGAACTTCC
TTGGCGTGTTAATGCTCAATTCTGGAGAGACAGCAGTGCTTTTCTCGGGA
TGTGAGTACGGGGGCCTGGAGGCAGATGCTGAAAGGACACATGCCGTGGT
CGTTAGACCGTTGACCTCGCATCCCTACAATGCCGGGACGGAGCGATATG
CCTGGTTGTTGCCGGCCCAGGCCACGGGGGGGGCTTGTAATATACAGTGG
GGGGAGCTTCATTTGTGACGTTCATCCCACGACGAACCGCTATTTTTGTT
CTTTGCCCTTCGCTGACTCTCGTTTCTCTACTCCCCCCCACTCCGCGCCC
CTTCCGCTTTTGCCCGTTGCCCTCCCGACGAAACTCTGCGGTGGGTGGTG
TTGTCTACTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTGGCTGGTGTTGT
CGGTCATGACTACTCTGTCCCGGATGTTATTGGTACCGTGTGCTTCAGGA
GCGAGTCCAAGAAGTCCAAGTAATAGAATAGCAACCGGTCGTGAGCTCGG
AGTTTGCGGTGATTTAAGTAGTCGTAATGTATACTCCTAGAGCGGGTAAG
GAGGACATCATTTTTTTCTTCCAGAGTTAGCTACCTGTCACGGATTGCGG
CCGTGGGTATGCACGAGGATTGCACAAATCATGGGGGTGGTTCGTTTGTG
TTGTTGCCCTTTTTGACCTCCGGCATACCGTAGTCGTGCTCACTTTTAAG
GATACCGCGTCAAGGGTAACATGTTTCATCACAAGCATGGCGTCCGCTAA
ATGCAAATCACTTTTTTTTTTTCGAGCTTCTAGTTTTAAGCGCATTTCCC
GCTTTTAACGACGCTTTTTGTGAAGAGAAAGTCACGAAGGTTCTTAAACG
CTGGGGCGGCTGTATCTGGACACTTTCTTGTGTGGGAAACATGGCAAGAG
ACGGAAAGCGAAGAGATATTTCCTCCGGCCGAGCATTTTTGTTTTTCGTT
CGTTGGGTGTACAAGACGGCGAACACGCGCTACTGCTGTACAGCAGTAGT
TCTTGGTGTGCGCCCACGCTTGGAATTGGGAAATGATCGAAGAGTCACGA
TGCTGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:785214..792870+

>mRNA_Ecto-sp6_S_contig82.17480.1 ID=mRNA_Ecto-sp6_S_contig82.17480.1|Name=mRNA_Ecto-sp6_S_contig82.17480.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:785214..792870+ (Ectocarpus species6 EcLAC_371)
ATGGACGAGGATGAGCTCATCGTGCCGCAGTCGGTGGAGACTGGGGACAC
GGTCAAGATGAAGCAGATCATGGACGATGCCGTCATCAAGGCCGTGCTGG
AGATGGGGTACGAGGAGGACCACACCCTTAACAACGCCAAGCTGGCCGTG
ATGGCCCTGGCGTGCGTCTTCGCAGTCACGGCGCAGTTCTGGCCGCAGCC
CTTTCCGGAGAGCCGAGCCCTCCTCGCAGTCTGCTGCGTCAGCTACTTCG
CCTGCAGCTTTGGTCTGCACTTGATTGTCACCTACTGGGAGAAGGACCTC
ATTCTCGCCACCGCAAGAAGCTCAAGCCGATCTATGGGGAAGGGGATCTT
TGTGCGGACAGACTTTCCTCGGTTCGACGAGATTTTCACCGTGTCCGCGG
AGGAGAGGAAGCCGGGATCCAAACCAATCGAAGAGCAATGGAACGTGGGG
AAATACTTTGATTACGAGGGCAACTTTGACGAGTGGGGGATGGGGGATGC
GGTAAAGAAGCTGGTGACCAGGCTGGAGAAGCGCGCAAGAGACAAGAAGA
AGAAGGAGAAAAAAGAAAAGAGCGAGTCCAAGAAGTCCAAGTAA
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