mRNA_Ecto-sp6_S_contig82.17466.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17466.1
Unique NamemRNA_Ecto-sp6_S_contig82.17466.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17466.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 9.250e-116
Identity = 201/251 (80.08%), Postives = 204/251 (81.27%), Query Frame = -2 
Query:    2 SQGTSGPTPPYVSPHGRPLTSSSXXXXXXXXXXXXXXXXXXXGATSPCSSAWCGDSFTSGLSASSRRGNVRWSDECGGELVTQVRTTTDFWEMMVFGDGGCCTCPSSS---------SETVCDGCGKPRRRPCGDAFSSSSSPPGELFRFIAELSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVKDKSGAGSSAESPATVAGCGGEMREVEGAVGSEWGEQEE 727
            SQGTSGPTPPYVSPH RP TS  XXXXXXXXXXXX       GATSPCSSA CG+SFTSGL ASSRRG VRWSDECGGELVTQVRTTTDFWEMMV GDGGCCTC             +ETVCDGCG+ RRRP GDA  SSS PPGELFRFIAELSRGVEATLVFPG GGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIR KTLLEVKDKSGAGS AES   VA CGG    VEGA  SE GEQEE
Sbjct:   37 SQGTSGPTPPYVSPHRRPSTSXXXXXXXXXXXXXX-------GATSPCSSAGCGNSFTSGLCASSRRGTVRWSDECGGELVTQVRTTTDFWEMMVLGDGGCCTCXXXXXXXXXXXXXTETVCDGCGELRRRPGGDACCSSS-PPGELFRFIAELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRSKTLLEVKDKSGAGSRAES---VARCGGGAHGVEGAFRSECGEQEE 276
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BLAST of mRNA_Ecto-sp6_S_contig82.17466.1 vs. uniprot
Match: D8LE00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE00_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 5.390e-57
Identity = 92/99 (92.93%), Postives = 96/99 (96.97%), Query Frame = -2 
Query:    2 ELSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVKDKSGAGSSAESPATVAGCGGEMREVEGAVGSEWGEQEE 298
            +LSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEV+DKSGAGSSAESPATVAG GGE+ EVEGA GSEWGEQ+E
Sbjct:   14 QLSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSGEPYRIRCKTLLEVRDKSGAGSSAESPATVAGSGGELHEVEGAFGSEWGEQKE 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTP6_9PHAE9.250e-11680.08Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
D8LE00_ECTSI5.390e-5792.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:655179..655909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size733
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350454.0469067-UTR-Ecto-sp6_S_contig82:655178..6554801682350454.0469067-UTR-Ecto-sp6_S_contig82:655178..655480Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 655179..655480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350454.0577984-CDS-Ecto-sp6_S_contig82:655480..6559091682350454.0577984-CDS-Ecto-sp6_S_contig82:655480..655909Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 655481..655909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17466.1prot_Ecto-sp6_S_contig82.17466.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 655481..655909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17466.1

>prot_Ecto-sp6_S_contig82.17466.1 ID=prot_Ecto-sp6_S_contig82.17466.1|Name=mRNA_Ecto-sp6_S_contig82.17466.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=143bp
MNRKSSPGGDEEEEKASPHGRRRGLPHPSHTVSLLLDGQVQHPPSPNTII
SQKSVVVRTWVTSSPPHSSLHLTFPLLLLALSPLVKLSPHHALLHGEVAP
EPLALLLPLLLLLLLLEEEEEEVKGRPWGDTYGGVGPEVPWLP
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mRNA from alignment at Ecto-sp6_S_contig82:655179..655909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17466.1 ID=mRNA_Ecto-sp6_S_contig82.17466.1|Name=mRNA_Ecto-sp6_S_contig82.17466.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=731bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:655179..655909+ (Ectocarpus species6 EcLAC_371)
CCTCCTCTTGCTCGCCCCACTCCGAACCGACAGCCCCCTCGACCTCACGC
ATTTCTCCGCCGCACCCCGCCACTGTTGCCGGACTCTCAGCACTCGAACC
CGCGCCCGACTTGTCCTTAACCTCTAGCAGGGTCTTGCAGCGGATGCGGT
AGGGCTCGCCGGACCCATTGGCACCGGTCTTGATCCAGCAGATGGACTCT
CCGTTGTCCTCGGTGTAGAGGATCACCGGCCTCCTCTTCTTGCTGATTCC
GCCAAAGCCAGGAAATACCAGGGTTGCCTCCACCCCCCGCGACAGCTCCG
CGATGAACCGAAAGAGCTCTCCCGGCGGGGACGAGGAGGAGGAGAAGGCG
TCACCGCATGGCCGTCGCCGGGGCTTGCCGCACCCGTCACACACGGTCTC
GCTGCTGCTGGACGGACAGGTGCAGCACCCGCCGTCCCCGAACACCATCA
TCTCCCAGAAGTCAGTCGTCGTCCGAACCTGGGTTACCAGCTCGCCCCCG
CACTCATCGCTCCATCTCACATTCCCTCTCCTGCTGCTCGCGCTCAGCCC
ACTGGTGAAGCTGTCTCCGCACCATGCGCTGCTGCACGGGGAAGTGGCGC
CGGAGCCGCTCGCGCTGCTGCTGCCACTGCTGCTGCTGCTGCTGCTGCTC
GAGGAGGAGGAGGAGGAGGTTAAGGGACGCCCATGGGGAGATACATACGG
CGGTGTCGGACCCGAGGTGCCTTGGCTCCCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:655179..655909+

>mRNA_Ecto-sp6_S_contig82.17466.1 ID=mRNA_Ecto-sp6_S_contig82.17466.1|Name=mRNA_Ecto-sp6_S_contig82.17466.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:655179..655909+ (Ectocarpus species6 EcLAC_371)
ATGAACCGAAAGAGCTCTCCCGGCGGGGACGAGGAGGAGGAGAAGGCGTC
ACCGCATGGCCGTCGCCGGGGCTTGCCGCACCCGTCACACACGGTCTCGC
TGCTGCTGGACGGACAGGTGCAGCACCCGCCGTCCCCGAACACCATCATC
TCCCAGAAGTCAGTCGTCGTCCGAACCTGGGTTACCAGCTCGCCCCCGCA
CTCATCGCTCCATCTCACATTCCCTCTCCTGCTGCTCGCGCTCAGCCCAC
TGGTGAAGCTGTCTCCGCACCATGCGCTGCTGCACGGGGAAGTGGCGCCG
GAGCCGCTCGCGCTGCTGCTGCCACTGCTGCTGCTGCTGCTGCTGCTCGA
GGAGGAGGAGGAGGAGGTTAAGGGACGCCCATGGGGAGATACATACGGCG
GTGTCGGACCCGAGGTGCCTTGGCTCCCC
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