mRNA_Ecto-sp6_S_contig82.17461.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17461.1
Unique NamemRNA_Ecto-sp6_S_contig82.17461.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:620051..621114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1064
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_003090.1
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350458.6924765-UTR-Ecto-sp6_S_contig82:620050..6206891682350458.6924765-UTR-Ecto-sp6_S_contig82:620050..620689Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 620051..620689 +
1682350458.7207873-UTR-Ecto-sp6_S_contig82:620887..6211141682350458.7207873-UTR-Ecto-sp6_S_contig82:620887..621114Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 620888..621114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350458.7089207-CDS-Ecto-sp6_S_contig82:620689..6208871682350458.7089207-CDS-Ecto-sp6_S_contig82:620689..620887Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 620690..620887 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17461.1prot_Ecto-sp6_S_contig82.17461.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 620690..620887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17461.1

>prot_Ecto-sp6_S_contig82.17461.1 ID=prot_Ecto-sp6_S_contig82.17461.1|Name=mRNA_Ecto-sp6_S_contig82.17461.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=66bp
MMPNQIELAMPSFPWFCPFVTPDFRERYQLLGGQQQCRYRGGHLGYSDYG
GLISFLVGPDLRVVP*
back to top

mRNA from alignment at Ecto-sp6_S_contig82:620051..621114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17461.1 ID=mRNA_Ecto-sp6_S_contig82.17461.1|Name=mRNA_Ecto-sp6_S_contig82.17461.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1064bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:620051..621114+ (Ectocarpus species6 EcLAC_371)
GCCGGTCTCCCTGCGGCAGCTATCGTTTGATTGGACCTTCAACCAGGCGA
TCGCGGGCGTCGAGTGGCCGGTCTCCCTGCAGCAGCTAACGTTTGGGAAA
GACTTCAACCAGCCTATCGCCGACGTCGAGTGGCCGGTCTCCCTGGAGCA
GCTAACGTTTGGATATTTCTTCAACCAGAGCATCACCGAGGTCGTGTGGC
CAGTTTCCTTGCAGCAACTGTCATTTGTGGCTTTCTTCAACCGGCCCATT
GCCGGCATCGAGTGGCCGGTCTCCCTTCAGCAGCTATCGTTTGGGGTTTA
CTTCAACCAGCCCATCGCCGACGTCGTGTGGCCGGCCTCCCTGCAGCAGC
TATCGTTTGGGAGAGATTTCGATCAGCCCATCGCTGACGTGATGTGGCCG
GCGTCCCTGCAGCAGCTATCGTTTGGGGAAGAATTCAACCAACCCATCGC
CGACGTCGATTGGCCAGTCTCCTTACGAAGTGTGACTTGTCGCGGACACA
GTCTGCGGTGATAGTTGCCGAGTCACGTCTCTCGTCGTGCGGTTCCTGCT
TTCGGCAAGAAAGAAGAAGGGATGGTTTTGGTTGGAAAGACGGTTACATT
AGCTAGGAACGCCCGTACACTTCTGTCCGCGGGAAGCCTATGATGCCCAA
TCAGATCGAGTTGGCGATGCCCTCCTTTCCATGGTTCTGTCCTTTTGTCA
CACCAGACTTTCGAGAGCGGTATCAGTTGCTTGGGGGGCAGCAGCAGTGC
AGGTATCGCGGAGGTCATCTCGGGTATTCCGATTATGGTGGATTGATCAG
TTTCCTGGTGGGACCGGATCTTCGGGTCGTGCCATGACGTACACCGACGA
AGGAGGTGTGTGGTAGCGGGGCAACAGCGTCACCCCAGGCATACACGTCA
TCGAGGCCGGTATATCAACCTGCCGTGACCATTTTATCCCTGGTCATTGA
AACTTCAGACGCGGAGGTGGGACGGGGGAGGGGAGTCCCGTTTGTACTTG
GAGCCGTTGGAGACGGATTCGCCGTAGGAGGATACACGAACATTTTCGGC
TTCGTCCAAAACTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:620051..621114+

>mRNA_Ecto-sp6_S_contig82.17461.1 ID=mRNA_Ecto-sp6_S_contig82.17461.1|Name=mRNA_Ecto-sp6_S_contig82.17461.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:620051..621114+ (Ectocarpus species6 EcLAC_371)
ATGATGCCCAATCAGATCGAGTTGGCGATGCCCTCCTTTCCATGGTTCTG
TCCTTTTGTCACACCAGACTTTCGAGAGCGGTATCAGTTGCTTGGGGGGC
AGCAGCAGTGCAGGTATCGCGGAGGTCATCTCGGGTATTCCGATTATGGT
GGATTGATCAGTTTCCTGGTGGGACCGGATCTTCGGGTCGTGCCATGA
back to top