mRNA_Ecto-sp6_S_contig82.17457.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17457.1
Unique NamemRNA_Ecto-sp6_S_contig82.17457.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: D7FYI4_ECTSI (S5 DRBM domain-containing protein n=3 Tax=Eukaryota TaxID=2759 RepID=D7FYI4_ECTSI)

HSP 1 Score: 460 bits (1184), Expect = 1.220e-162
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 762
            DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF
Sbjct:   52 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAAEF 281
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: A0A835Z6C9_9STRA (40S ribosomal protein S2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C9_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.840e-132
Identity = 189/219 (86.30%), Postives = 202/219 (92.24%), Query Frame = 1 
Query:   82 KEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 738
            KEWVP+TKLGRLVKE KIKSLE+IY FSM I+E QIVD FLG KLKDEVMKIMPVQKVSAAGQITRFKAFVAVGD +GHVGLGVKCAKEVATAIRGAI IAKMSVVP+RRGYWGRRNG PHTVP KVTGKCGSVRVRLIPAPRGTGLVA+PV +KLL MAGVEDCYT S GHTRT+GNFVKAV+FAL KTYGYLSPELW PT F+++PYQEHTDFLAK+
Sbjct:   31 KEWVPVTKLGRLVKEEKIKSLEEIYSFSMRIQECQIVDKFLGDKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDSNGHVGLGVKCAKEVATAIRGAITIAKMSVVPIRRGYWGRRNGQPHTVPCKVTGKCGSVRVRLIPAPRGTGLVASPVSRKLLGMAGVEDCYTCSNGHTRTMGNFVKAVFFALGKTYGYLSPELWAPTQFKASPYQEHTDFLAKS 249
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: A0A7S4UVA6_9DINO (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S4UVA6_9DINO)

HSP 1 Score: 365 bits (937), Expect = 4.300e-125
Identity = 180/221 (81.45%), Postives = 201/221 (90.95%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAK 735
            D DKEWVP+TKLGRLVK+ KIKSLE+IYL+S+ IKEYQIVD+FL + LKDEVMKIMPVQK SAAGQ TRFKAFVAVGD +GHVGLGVKCA EVATAIRGAII+AK+SVVP+RRGYWG++ G+PHTV NKVTGKCGSV VRLIPAPRGTGLVA+PVPKKLL MAGVED Y+ S GHTRT+GNF+KAVY AL+KTYGYLSPELWKPTVF   PYQE+TDFL+K
Sbjct:   41 DGDKEWVPVTKLGRLVKDGKIKSLEEIYLYSLPIKEYQIVDYFLPN-LKDEVMKIMPVQKQSAAGQRTRFKAFVAVGDYNGHVGLGVKCASEVATAIRGAIILAKISVVPIRRGYWGKKVGLPHTVANKVTGKCGSVSVRLIPAPRGTGLVASPVPKKLLGMAGVEDVYSQSTGHTRTMGNFIKAVYTALSKTYGYLSPELWKPTVFTPTPYQEYTDFLSK 260
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: A0A7S2BZ58_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BZ58_9STRA)

HSP 1 Score: 366 bits (939), Expect = 4.590e-125
Identity = 181/233 (77.68%), Postives = 203/233 (87.12%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFL----AKNPAPKAAE 759
            DDDKEWVPITKLGRLVKE KIKSLE+I+LFSM IKEYQIVD FLG+KLKDEVM IMPVQK + AGQ TRFKAFVAVGD SGHVGLGVKCAKEVATAIRGAII+AKM+++P+RRG+WG++ G PHTV  K+TGKCGSVRVRLIPAPRGTGLVAAP  KK+L+MAG++DCYTSSRGHTRT+GNF+KA +FALAK+YGYLSPELW  T F   P+QEHTDFL     K  APK  E
Sbjct:   63 DDDKEWVPITKLGRLVKEQKIKSLEEIFLFSMPIKEYQIVDLFLGTKLKDEVMGIMPVQKQTTAGQRTRFKAFVAVGDFSGHVGLGVKCAKEVATAIRGAIIMAKMNIIPIRRGFWGKQVGQPHTVSQKLTGKCGSVRVRLIPAPRGTGLVAAPATKKILAMAGLDDCYTSSRGHTRTMGNFIKACFFALAKSYGYLSPELWPETQFLPPPFQEHTDFLKNAGGKEAAPKPFE 295
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: A0A3M6TJ54_POCDA (40S ribosomal protein S2 n=3 Tax=Astrocoeniina TaxID=123757 RepID=A0A3M6TJ54_POCDA)

HSP 1 Score: 358 bits (918), Expect = 3.230e-122
Identity = 171/221 (77.38%), Postives = 198/221 (89.59%), Query Frame = 1 
Query:   76 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 738
            +DKEWVP+TKLGRLVK+ KIK+LE IYLFS+ IKE++I+DFFLGS LKDEV+KIMPVQK + AGQ TRFKAFVA+GD SGHVGLGVKC+KEVATAIRGAII+AK+SV+PVRRGYWG + G PHTVP KVTGKCGSVRVRLIPAPRGTG+V+APVPKKLL MAG+EDCYTS+RG T TLGNF KA + A++KT+ YL+P++WK TVF  APYQE TDFLAKN
Sbjct:   41 EDKEWVPVTKLGRLVKDMKIKTLEQIYLFSLPIKEHEIIDFFLGSHLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSSGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGQPHTVPCKVTGKCGSVRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSARGQTATLGNFAKATFAAISKTFCYLTPDMWKDTVFTKAPYQEFTDFLAKN 261
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: A0A484DZT2_BRELC (S5 DRBM domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=A0A484DZT2_BRELC)

HSP 1 Score: 357 bits (916), Expect = 3.850e-122
Identity = 196/250 (78.40%), Postives = 220/250 (88.00%), Query Frame = 1 
Query:    4 RGGFGRXXXXXXXXXXXXXXXXX-DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 750
            RGGFGRXXXXXXXXXXXXXXXXX ++ KEWVP+TKLGRLVKE KI SLE+IYLFS+ IKE +IV++FL + LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVATAIRGAII+AK+S+VPVRRGYWGR  G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAPVPKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW+   F  +PYQE+TDFLAK    K
Sbjct:   12 RGGFGRXXXXXXXXXXXXXXXXXXEESKEWVPVTKLGRLVKEGKISSLEEIYLFSLPIKECEIVNYFLEASLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDSNGHIGLGVKCAKEVATAIRGAIILAKISLVPVRRGYWGRMVGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPVPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWEQHTFGQSPYQEYTDFLAKTAIKK 261
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: K3X0V8_GLOUD (S5 DRBM domain-containing protein n=5 Tax=Oomycota TaxID=4762 RepID=K3X0V8_GLOUD)

HSP 1 Score: 355 bits (910), Expect = 2.940e-121
Identity = 191/251 (76.10%), Postives = 216/251 (86.06%), Query Frame = 1 
Query:    4 RGGFGRXXXXXXXXXXXXXXXXX--DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 750
            RGGFGR   XXXXXXXXX XXXX  DD+KEWVP+TKLGRLVKE KI SLE+IYLFS+ IKE +IV+ FL ++LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVAT+IRGAII+AK+++VPVRRGYWG   G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAP PKKLL MAG+EDCYTS+RGHTRTLGNFVKA ++AL  TY YL+P+LW+   F ++PYQEHTDFLAK    K
Sbjct:    9 RGGFGRGRGXXXXXXXXXRXXXXGGDDNKEWVPVTKLGRLVKEGKISSLEEIYLFSLPIKECEIVNHFLEAQLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDHNGHIGLGVKCAKEVATSIRGAIILAKIALVPVRRGYWGLMIGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPAPKKLLGMAGIEDCYTSARGHTRTLGNFVKATFYALRATYAYLTPDLWEQHSFAASPYQEHTDFLAKTTIKK 259
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: M4BLS4_HYAAE (S5 DRBM domain-containing protein n=19 Tax=Oomycota TaxID=4762 RepID=M4BLS4_HYAAE)

HSP 1 Score: 355 bits (911), Expect = 1.440e-120
Identity = 194/251 (77.29%), Postives = 217/251 (86.45%), Query Frame = 1 
Query:    4 RGGFGRXXXXXXXXXXXXXXXXX--DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK 750
            RGGFGR XXXXXXXXXXX XXXX  ++ KEWVP+TKLGRLVKE KI SLE+IYLFS+ IKE +IV++FL S LKDEVMKIMPVQK + AGQ TRFKAFVAVGD +GH+GLGVKCAKEVATAIRGAII+AK+S+VPVRRGYWGR  G PHTVPNKVTGKCGSVRVRLIPAPRGTGL AAPVPKKLL MAG+EDCYTS+RGHTRT+GNFVKA ++AL  TY YL+P+LW+   F  +PYQ HTDFLAK    K
Sbjct:   65 RGGFGRGXXXXXXXXXXXRXXXXXXEESKEWVPVTKLGRLVKEGKIGSLEEIYLFSLPIKECEIVNYFLESSLKDEVMKIMPVQKQTTAGQRTRFKAFVAVGDSNGHIGLGVKCAKEVATAIRGAIILAKISLVPVRRGYWGRMVGAPHTVPNKVTGKCGSVRVRLIPAPRGTGLCAAPVPKKLLGMAGIEDCYTSARGHTRTMGNFVKATFYALRATYAYLTPDLWEQHSFVPSPYQAHTDFLAKTAIKK 315
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: RS2_URECA (40S ribosomal protein S2 n=1 Tax=Urechis caupo TaxID=6431 RepID=RS2_URECA)

HSP 1 Score: 353 bits (905), Expect = 3.280e-120
Identity = 168/222 (75.68%), Postives = 198/222 (89.19%), Query Frame = 1 
Query:   73 DDDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKN 738
            D DKEWVP+TKLGRLVK+ KIK+LE+IYLFS+ IKE++I+DFFLG  LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEVATAIRGAII+AK+SVVPVRRGYWG + G PHTVP KVTGKCGSV VRLIPAPRGTG+V+APVPKKLL+MAG++DCYTS+RG T TLGNF KA Y A+A TY YL+P+LW+ TVF  +PYQE+TD+LAK+
Sbjct:   41 DGDKEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYLAKH 262
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BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Match: A0A6S7JAX4_PARCT (40S ribosomal protein S2 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7JAX4_PARCT)

HSP 1 Score: 353 bits (906), Expect = 6.500e-120
Identity = 172/227 (75.77%), Postives = 196/227 (86.34%), Query Frame = 1 
Query:   76 DDKEWVPITKLGRLVKENKIKSLEDIYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAVGDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTVPNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHTRTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPKAA 756
            DDKEWVP+TKLGRLVKE KIKSLE IYLFS+ IKE++I+DFFLG+ LKDEV+KIMPVQK + AGQ TRFKAFVA+GD +GHVGLGVKC+KEVATAIRGAII+AK+SV+PVRRGYWG + G PHTVP KVTGKCGSVRVRLIPAPRGTG+V+APVPKKLL MAG++DCYTS+RG T TLGNF KA + A+AKTY YL+P+LW    F   PYQE TDFLAK   PK A
Sbjct:   66 DDKEWVPVTKLGRLVKELKIKSLEQIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDHNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVRVRLIPAPRGTGIVSAPVPKKLLQMAGIDDCYTSARGATATLGNFAKATFQAIAKTYEYLTPDLWGENKFTKVPYQEFTDFLAKPVLPKPA 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI4_ECTSI1.220e-162100.00S5 DRBM domain-containing protein n=3 Tax=Eukaryot... [more]
A0A835Z6C9_9STRA1.840e-13286.3040S ribosomal protein S2 n=1 Tax=Tribonema minus T... [more]
A0A7S4UVA6_9DINO4.300e-12581.45Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S2BZ58_9STRA4.590e-12577.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M6TJ54_POCDA3.230e-12277.3840S ribosomal protein S2 n=3 Tax=Astrocoeniina Tax... [more]
A0A484DZT2_BRELC3.850e-12278.40S5 DRBM domain-containing protein n=7 Tax=Peronosp... [more]
K3X0V8_GLOUD2.940e-12176.10S5 DRBM domain-containing protein n=5 Tax=Oomycota... [more]
M4BLS4_HYAAE1.440e-12077.29S5 DRBM domain-containing protein n=19 Tax=Oomycot... [more]
RS2_URECA3.280e-12075.6840S ribosomal protein S2 n=1 Tax=Urechis caupo Tax... [more]
A0A6S7JAX4_PARCT6.500e-12075.7740S ribosomal protein S2 n=4 Tax=Alcyonacea TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:591789..593157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score463.0
Seed ortholog evalue9e-128
Seed eggNOG ortholog2880.D7FYI4
Preferred nameRPS2
Model size765
KEGG rclassRC00005,RC00482
KEGG koko:K02355,ko:K02981,ko:K07151,ko:K21668
KEGG ReactionR04216,R05976
KEGG Pathwayko00510,ko00513,ko01100,ko03010,ko04141,ko05167,map00510,map00513,map01100,map03010,map04141,map05167
KEGG ModuleM00072,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006417,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009636,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019838,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034097,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042493,GO:0042886,GO:0043043,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0045903,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070181,GO:0070670,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071310,GO:0071345,GO:0071353,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097305,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1903320,GO:1903322,GO:1990904,GO:2000112
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0098@1,KOG0877@2759
Ec32 ortholog descriptionDouble-stranded RNA-binding domain
Ec32 orthologEc-23_003070.1
EC2.4.99.18
Cds size765
COG Functional cat.J
CAZyGT66
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01003,ko03011,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350458.4238918-CDS-Ecto-sp6_S_contig82:591788..5923751682350458.4238918-CDS-Ecto-sp6_S_contig82:591788..592375Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 591789..592375 -
1682350458.434227-CDS-Ecto-sp6_S_contig82:592979..5931571682350458.434227-CDS-Ecto-sp6_S_contig82:592979..593157Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 592980..593157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17457.1prot_Ecto-sp6_S_contig82.17457.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 591789..593157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17457.1

>prot_Ecto-sp6_S_contig82.17457.1 ID=prot_Ecto-sp6_S_contig82.17457.1|Name=mRNA_Ecto-sp6_S_contig82.17457.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=255bp
GRGGFGRGRGDRGRGRGRGRGRPRDDDKEWVPITKLGRLVKENKIKSLED
IYLFSMAIKEYQIVDFFLGSKLKDEVMKIMPVQKVSAAGQITRFKAFVAV
GDESGHVGLGVKCAKEVATAIRGAIIIAKMSVVPVRRGYWGRRNGMPHTV
PNKVTGKCGSVRVRLIPAPRGTGLVAAPVPKKLLSMAGVEDCYTSSRGHT
RTLGNFVKAVYFALAKTYGYLSPELWKPTVFQSAPYQEHTDFLAKNPAPK
AAEF*
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mRNA from alignment at Ecto-sp6_S_contig82:591789..593157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17457.1 ID=mRNA_Ecto-sp6_S_contig82.17457.1|Name=mRNA_Ecto-sp6_S_contig82.17457.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1369bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:591789..593157- (Ectocarpus species6 EcLAC_371)
GGCCGCGGCGGCTTCGGGAGGGGCCGCGGTGACCGCGGACGCGGACGCGG
CCGTGGGCGCGGGCGCCCGCGCGATGACGACAAGGAGTGGGTGCCCATCA
CCAAGCTCGGCCGCCTGGTGAAGGAGAACAAGATCAAGTCCCTCGAGGAC
ATCTACCTGTTCTCCATGGCCATCAAGGGTGAGGGATTGGTTTTTCGTTT
CTACCGTACGGTAGCACATATCCCAGTCGTGGTACAGGTATGCATACGTG
GGGCGAAATCGTTTGTCATAGACTCGACCCTCCATGGTACGGTTGGGTAC
CCTCCCGTTCCGGTGGAAGAGGGGGGATACGTTCGGACTATGAGGGTCGA
GGGCCTTTGTTACACCACCCTCTTACGTCGGAGCCACGACTGTACCATGT
TTGGGCGCAAGCTTGTTTTTTTCCCGCCGACATGCCCCACCTGCGCGGTG
TGTGTGTGCGGCCTGTCTGCGAGTTGGCGGACAATTTTTTCAAGCGGCGT
AGGTTGCAATGCGCCTGAAGCCTCCCTCACGTCAATCGTGAGTCACGGGC
GAACGCCTTGTCCCGCACAACAGAGTACCAGATCGTGGCTTCTGCCCGGG
CCCTCCGTACTGTATTCCGTCTTCCGTGTGCACGACTCACGACCCCCCTT
TACACTACTTGACTCGCACAACAGAATACCAGATCGTGGCTTCTTCCTGG
GCCCCCCGTACCGTGTTCCGTGTTCGTGCGCACGACTCACGACCGCCAAC
CCCCCCCACTCCTTGACCCGCACAACAAACAGAGTACCAGATCGTGGACT
TCTTCCTCGGCTCCAAGCTCAAGGACGAGGTGATGAAGATCATGCCCGTG
CAGAAGGTGTCCGCCGCCGGTCAGATCACCCGCTTCAAGGCCTTTGTCGC
CGTCGGCGACGAGAGCGGCCACGTCGGCCTCGGCGTCAAGTGCGCCAAGG
AGGTGGCCACGGCCATCCGCGGCGCCATCATCATCGCCAAGATGTCGGTC
GTGCCCGTGCGCCGCGGCTACTGGGGCCGCAGGAACGGCATGCCCCACAC
CGTGCCCAACAAGGTGACCGGAAAGTGCGGGTCCGTGCGCGTGCGCCTGA
TCCCGGCCCCGCGCGGGACGGGCCTCGTGGCCGCCCCCGTGCCCAAGAAG
CTCCTGAGCATGGCCGGCGTGGAGGACTGCTACACGTCTTCCCGTGGGCA
CACCCGCACCCTGGGCAACTTCGTGAAGGCGGTCTACTTCGCCCTCGCCA
AGACCTACGGCTACCTCTCCCCCGAGCTGTGGAAGCCCACCGTCTTCCAG
TCGGCGCCGTACCAGGAGCACACCGACTTCCTGGCCAAGAACCCGGCCCC
CAAGGCGGCGGAGTTCTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:591789..593157-

>mRNA_Ecto-sp6_S_contig82.17457.1 ID=mRNA_Ecto-sp6_S_contig82.17457.1|Name=mRNA_Ecto-sp6_S_contig82.17457.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:591789..593157- (Ectocarpus species6 EcLAC_371)
GGCCGCGGCGGCTTCGGGAGGGGCCGCGGTGACCGCGGACGCGGACGCGG
CCGTGGGCGCGGGCGCCCGCGCGATGACGACAAGGAGTGGGTGCCCATCA
CCAAGCTCGGCCGCCTGGTGAAGGAGAACAAGATCAAGTCCCTCGAGGAC
ATCTACCTGTTCTCCATGGCCATCAAGGAGTACCAGATCGTGGACTTCTT
CCTCGGCTCCAAGCTCAAGGACGAGGTGATGAAGATCATGCCCGTGCAGA
AGGTGTCCGCCGCCGGTCAGATCACCCGCTTCAAGGCCTTTGTCGCCGTC
GGCGACGAGAGCGGCCACGTCGGCCTCGGCGTCAAGTGCGCCAAGGAGGT
GGCCACGGCCATCCGCGGCGCCATCATCATCGCCAAGATGTCGGTCGTGC
CCGTGCGCCGCGGCTACTGGGGCCGCAGGAACGGCATGCCCCACACCGTG
CCCAACAAGGTGACCGGAAAGTGCGGGTCCGTGCGCGTGCGCCTGATCCC
GGCCCCGCGCGGGACGGGCCTCGTGGCCGCCCCCGTGCCCAAGAAGCTCC
TGAGCATGGCCGGCGTGGAGGACTGCTACACGTCTTCCCGTGGGCACACC
CGCACCCTGGGCAACTTCGTGAAGGCGGTCTACTTCGCCCTCGCCAAGAC
CTACGGCTACCTCTCCCCCGAGCTGTGGAAGCCCACCGTCTTCCAGTCGG
CGCCGTACCAGGAGCACACCGACTTCCTGGCCAAGAACCCGGCCCCCAAG
GCGGCGGAGTTCTAA
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