mRNA_Ecto-sp6_S_contig82.17450.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: D7FYJ2_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ2_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.100e-41 Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1
Query: 1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGVCTDPLVEHCVIIAVSYH 207
GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP+ENQMIQN LLVRCHLKGVCT LVEHCVIIAVSYH
Sbjct: 5 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVPMENQMIQNGLLVRCHLKGVCTGSLVEHCVIIAVSYH 73
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A6H5KS53_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS53_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 3.090e-14 Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1
Query: 1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP
Sbjct: 20 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 52
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: M1VA78_CYAM1 (Similar to ubiquitin conjugating enzyme E2 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VA78_CYAM1) HSP 1 Score: 55.8 bits (133), Expect = 1.090e-7 Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query: 1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFV---PIENQMIQNSLLVRCHLKGVCTDPLVEHCVIIAVS 201
G T+YAGE YR+R RFP++YPIEAPEVVF+ P+ + N L L + L + V +++
Sbjct: 100 GVESTLYAGEVYRLRFRFPSDYPIEAPEVVFLGNPPVHEHVYSNGHLCLSILYDNWSPALTVNSVALSIQ 169
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A1J3DRU4_NOCCA (Ubiquitin-conjugating enzyme 15 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DRU4_NOCCA) HSP 1 Score: 53.1 bits (126), Expect = 1.640e-7 Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1
Query: 1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
GA T+YA ETY++++ FP NYP+EAP+VVFVP
Sbjct: 45 GAPGTLYANETYQLQVEFPVNYPMEAPQVVFVP 77
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: K2S5I1_MACPH (Ubiquitin-conjugating enzyme E2 n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2S5I1_MACPH) HSP 1 Score: 53.9 bits (128), Expect = 2.850e-7 Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 16 VYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGV-CTDPL 171
+Y +TYR++ +FP NYPIEAPEVVFVP+ Q I L + G+ C D L
Sbjct: 45 LYRDQTYRLKFKFPNNYPIEAPEVVFVPVPAQNIGIPLHPHIYSNGIICLDLL 97
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A316YKG9_9BASI (UBC-like protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YKG9_9BASI) HSP 1 Score: 52.8 bits (125), Expect = 8.040e-7 Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1
Query: 10 DTVYAGETYRIRIRFPANYPIEAPEVVFV 96
DTVYAGET+ +R RFP NYP+E+PEVVFV
Sbjct: 47 DTVYAGETFALRFRFPDNYPLESPEVVFV 75
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: R1GQK4_BOTPV (Putative ubiquitin-conjugating enzyme protein n=1 Tax=Botryosphaeria parva (strain UCR-NP2) TaxID=1287680 RepID=R1GQK4_BOTPV) HSP 1 Score: 52.4 bits (124), Expect = 1.130e-6 Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1
Query: 16 VYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGV-CTDPL 171
+Y G+TYR++ +FP NYPIEAPEV+F+ + ++ I L + G+ C D L
Sbjct: 46 LYRGQTYRLKFKFPNNYPIEAPEVIFITVPDKNIGIPLHPHVYSNGIICLDLL 98
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A165Y4A2_DAUCS (UBC core domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A165Y4A2_DAUCS) HSP 1 Score: 52.4 bits (124), Expect = 1.220e-6 Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1
Query: 1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
GAA T+YA ETY+++I FP +YP+EAP+V+FVP
Sbjct: 51 GAAGTLYANETYKLQIDFPEHYPMEAPQVIFVP 83
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: UPI000C1D81D2 (probable ubiquitin-conjugating enzyme E2 18 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D81D2) HSP 1 Score: 51.6 bits (122), Expect = 2.430e-6 Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 1
Query: 1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
GA T+YAGETY++++ FP +YP+EAP+V+F+P
Sbjct: 52 GAPGTLYAGETYQLQVDFPEHYPMEAPQVIFIP 84
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A8H4N4U1_9PEZI (Ubiquitin-conjugating enzyme E2 n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4N4U1_9PEZI) HSP 1 Score: 52.8 bits (125), Expect = 2.560e-6 Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query: 16 VYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGV-CTDPL 171
+Y +TYR++ +FP NYPIEAPEVVF+P+ I L + G+ C D L
Sbjct: 45 LYRDQTYRLKFKFPNNYPIEAPEVVFIPVPTHSIGIPLHPHIYSNGIICLDLL 97 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig82.17450.1 >prot_Ecto-sp6_S_contig82.17450.1 ID=prot_Ecto-sp6_S_contig82.17450.1|Name=mRNA_Ecto-sp6_S_contig82.17450.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=70bp GAADTVYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKback to top mRNA from alignment at Ecto-sp6_S_contig82:547837..548382- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig82.17450.1 ID=mRNA_Ecto-sp6_S_contig82.17450.1|Name=mRNA_Ecto-sp6_S_contig82.17450.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=546bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:547837..548382- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:547837..548382- >mRNA_Ecto-sp6_S_contig82.17450.1 ID=mRNA_Ecto-sp6_S_contig82.17450.1|Name=mRNA_Ecto-sp6_S_contig82.17450.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:547837..548382- (Ectocarpus species6 EcLAC_371)back to top |