mRNA_Ecto-sp6_S_contig82.17450.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17450.1
Unique NamemRNA_Ecto-sp6_S_contig82.17450.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: D7FYJ2_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.100e-41
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGVCTDPLVEHCVIIAVSYH 207
            GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP+ENQMIQN LLVRCHLKGVCT  LVEHCVIIAVSYH
Sbjct:    5 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVPMENQMIQNGLLVRCHLKGVCTGSLVEHCVIIAVSYH 73          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A6H5KS53_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS53_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.090e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1
Query:    1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
            GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP
Sbjct:   20 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 52          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: M1VA78_CYAM1 (Similar to ubiquitin conjugating enzyme E2 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VA78_CYAM1)

HSP 1 Score: 55.8 bits (133), Expect = 1.090e-7
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFV---PIENQMIQNSLLVRCHLKGVCTDPLVEHCVIIAVS 201
            G   T+YAGE YR+R RFP++YPIEAPEVVF+   P+   +  N  L    L    +  L  + V +++ 
Sbjct:  100 GVESTLYAGEVYRLRFRFPSDYPIEAPEVVFLGNPPVHEHVYSNGHLCLSILYDNWSPALTVNSVALSIQ 169          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A1J3DRU4_NOCCA (Ubiquitin-conjugating enzyme 15 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DRU4_NOCCA)

HSP 1 Score: 53.1 bits (126), Expect = 1.640e-7
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1
Query:    1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
            GA  T+YA ETY++++ FP NYP+EAP+VVFVP
Sbjct:   45 GAPGTLYANETYQLQVEFPVNYPMEAPQVVFVP 77          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: K2S5I1_MACPH (Ubiquitin-conjugating enzyme E2 n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2S5I1_MACPH)

HSP 1 Score: 53.9 bits (128), Expect = 2.850e-7
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   16 VYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGV-CTDPL 171
            +Y  +TYR++ +FP NYPIEAPEVVFVP+  Q I   L    +  G+ C D L
Sbjct:   45 LYRDQTYRLKFKFPNNYPIEAPEVVFVPVPAQNIGIPLHPHIYSNGIICLDLL 97          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A316YKG9_9BASI (UBC-like protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YKG9_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 8.040e-7
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 1
Query:   10 DTVYAGETYRIRIRFPANYPIEAPEVVFV 96
            DTVYAGET+ +R RFP NYP+E+PEVVFV
Sbjct:   47 DTVYAGETFALRFRFPDNYPLESPEVVFV 75          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: R1GQK4_BOTPV (Putative ubiquitin-conjugating enzyme protein n=1 Tax=Botryosphaeria parva (strain UCR-NP2) TaxID=1287680 RepID=R1GQK4_BOTPV)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-6
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   16 VYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGV-CTDPL 171
            +Y G+TYR++ +FP NYPIEAPEV+F+ + ++ I   L    +  G+ C D L
Sbjct:   46 LYRGQTYRLKFKFPNNYPIEAPEVIFITVPDKNIGIPLHPHVYSNGIICLDLL 98          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A165Y4A2_DAUCS (UBC core domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A165Y4A2_DAUCS)

HSP 1 Score: 52.4 bits (124), Expect = 1.220e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
            GAA T+YA ETY+++I FP +YP+EAP+V+FVP
Sbjct:   51 GAAGTLYANETYKLQIDFPEHYPMEAPQVIFVP 83          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: UPI000C1D81D2 (probable ubiquitin-conjugating enzyme E2 18 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D81D2)

HSP 1 Score: 51.6 bits (122), Expect = 2.430e-6
Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 1
Query:    1 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVP 99
            GA  T+YAGETY++++ FP +YP+EAP+V+F+P
Sbjct:   52 GAPGTLYAGETYQLQVDFPEHYPMEAPQVIFIP 84          
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Match: A0A8H4N4U1_9PEZI (Ubiquitin-conjugating enzyme E2 n=1 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4N4U1_9PEZI)

HSP 1 Score: 52.8 bits (125), Expect = 2.560e-6
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1
Query:   16 VYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLKGV-CTDPL 171
            +Y  +TYR++ +FP NYPIEAPEVVF+P+    I   L    +  G+ C D L
Sbjct:   45 LYRDQTYRLKFKFPNNYPIEAPEVVFIPVPTHSIGIPLHPHIYSNGIICLDLL 97          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYJ2_ECTSI1.100e-4194.20UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KS53_9PHAE3.090e-14100.00UBC core domain-containing protein n=1 Tax=Ectocar... [more]
M1VA78_CYAM11.090e-740.00Similar to ubiquitin conjugating enzyme E2 n=1 Tax... [more]
A0A1J3DRU4_NOCCA1.640e-763.64Ubiquitin-conjugating enzyme 15 (Fragment) n=1 Tax... [more]
K2S5I1_MACPH2.850e-749.06Ubiquitin-conjugating enzyme E2 n=1 Tax=Macrophomi... [more]
A0A316YKG9_9BASI8.040e-775.86UBC-like protein n=1 Tax=Acaromyces ingoldii TaxID... [more]
R1GQK4_BOTPV1.130e-643.40Putative ubiquitin-conjugating enzyme protein n=1 ... [more]
A0A165Y4A2_DAUCS1.220e-663.64UBC core domain-containing protein n=2 Tax=Daucus ... [more]
UPI000C1D81D22.430e-657.58probable ubiquitin-conjugating enzyme E2 18 n=1 Ta... [more]
A0A8H4N4U1_9PEZI2.560e-645.28Ubiquitin-conjugating enzyme E2 n=1 Tax=Botryospha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:547837..548382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-23_003000.1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350457.9150805-CDS-Ecto-sp6_S_contig82:547836..5479471682350457.9150805-CDS-Ecto-sp6_S_contig82:547836..547947Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 547837..547947 -
1682350457.9344816-CDS-Ecto-sp6_S_contig82:548283..5483821682350457.9344816-CDS-Ecto-sp6_S_contig82:548283..548382Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 548284..548382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17450.1prot_Ecto-sp6_S_contig82.17450.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 547837..548382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17450.1

>prot_Ecto-sp6_S_contig82.17450.1 ID=prot_Ecto-sp6_S_contig82.17450.1|Name=mRNA_Ecto-sp6_S_contig82.17450.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=70bp
GAADTVYAGETYRIRIRFPANYPIEAPEVVFVPIENQMIQNSLLVRCHLK
GVCTDPLVEHCVIIAVSYH*
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mRNA from alignment at Ecto-sp6_S_contig82:547837..548382-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17450.1 ID=mRNA_Ecto-sp6_S_contig82.17450.1|Name=mRNA_Ecto-sp6_S_contig82.17450.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=546bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:547837..548382- (Ectocarpus species6 EcLAC_371)
GGTGCAGCGGACACCGTGTATGCGGGCGAGACGTACCGCATCAGGATAAG GTTCCCGGCGAACTATCCCATTGAGGCTCCCGAAGTCGTCTTCGTTCCGG TGAGTCTTGACGTCTGTGATATCTACGACACTCGACATCCTTTTCTCGAC TGGTCGGTGCGGTAGCTGTTCTTTTATTTCTATTTTTCCGAGTGGTTTGT ACTCTATTCTTGTTTTGTTTCCCCGCGGCGTCGTATGTACCGGGTTTTGC GACCACGGGCTCCCCATTTTTGTGGACTACAGAGCTAATGTGAGAAACAA CAACAACAACAACAACAATCTACGGTATTTACGACCAGAGACCAAGTAAT AGGTAGTTCAACCGCTTCAGAACGAAAACTTGGCAGTTTTTTTTTTTCTT CTCGGACAAATGTGTTGCCCACGTTTGTGTGGTAGATAGAAAACCAAATG ATACAGAATAGTTTATTGGTGCGATGTCATCTGAAGGGAGTATGTACCGA TCCTCTTGTGGAGCACTGTGTTATCATAGCCGTAAGCTACCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:547837..548382-

>mRNA_Ecto-sp6_S_contig82.17450.1 ID=mRNA_Ecto-sp6_S_contig82.17450.1|Name=mRNA_Ecto-sp6_S_contig82.17450.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:547837..548382- (Ectocarpus species6 EcLAC_371)
GGTGCAGCGGACACCGTGTATGCGGGCGAGACGTACCGCATCAGGATAAG
GTTCCCGGCGAACTATCCCATTGAGGCTCCCGAAGTCGTCTTCGTTCCGA
TAGAAAACCAAATGATACAGAATAGTTTATTGGTGCGATGTCATCTGAAG
GGAGTATGTACCGATCCTCTTGTGGAGCACTGTGTTATCATAGCCGTAAG
CTACCACTGA
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