mRNA_Ecto-sp6_S_contig82.17444.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17444.1
Unique NamemRNA_Ecto-sp6_S_contig82.17444.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:518414..519018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350453.870312-UTR-Ecto-sp6_S_contig82:518413..5184941682350453.870312-UTR-Ecto-sp6_S_contig82:518413..518494Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 518414..518494 +
1682350453.8808408-UTR-Ecto-sp6_S_contig82:518503..5186121682350453.8808408-UTR-Ecto-sp6_S_contig82:518503..518612Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 518504..518612 +
1682350453.91592-UTR-Ecto-sp6_S_contig82:518966..5190181682350453.91592-UTR-Ecto-sp6_S_contig82:518966..519018Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 518967..519018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350453.8986824-CDS-Ecto-sp6_S_contig82:518612..5189661682350453.8986824-CDS-Ecto-sp6_S_contig82:518612..518966Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 518613..518966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17444.1prot_Ecto-sp6_S_contig82.17444.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 518613..518966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17444.1

>prot_Ecto-sp6_S_contig82.17444.1 ID=prot_Ecto-sp6_S_contig82.17444.1|Name=mRNA_Ecto-sp6_S_contig82.17444.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
MVGVSAGVVCMCITSESSHTCAFLCIIPRQSDSIFIYFSTLYFVFVGGKK
KSVARVKSGVVVIVGCCCRCRRRRYHFVICLVISHCCRCFCYTTIVFRSL
QRLLSGVCLFVTFPQFF*
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mRNA from alignment at Ecto-sp6_S_contig82:518414..519018+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17444.1 ID=mRNA_Ecto-sp6_S_contig82.17444.1|Name=mRNA_Ecto-sp6_S_contig82.17444.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=605bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:518414..519018+ (Ectocarpus species6 EcLAC_371)
TGGAGAGGAACCAAAGAAGAAGGTCCATTTTTTTTGTTTTCTGTTTTTAT
TTTTTACTACTAGCGTTGTGAGGATTGAGAGGTAGCTGAGACTCCTCCAT
CCCTGTTTGCGTGATGGGAGGTGGTGATTGTTGAAGGATGGAAAACACGG
GGGTCGGTTGATCGCAAGGACGGAAAGAGTAGTAAGCTATCCCCGAGATA
TGGTGGGTGTAAGCGCGGGCGTTGTGTGTATGTGTATCACGTCGGAGAGT
AGTCACACCTGTGCTTTTTTGTGTATTATCCCCCGTCAGTCCGATTCTAT
ATTTATTTATTTTTCTACGCTTTATTTTGTGTTCGTTGGTGGAAAAAAGA
AGAGTGTAGCGCGCGTAAAGTCGGGTGTCGTCGTGATTGTTGGATGCTGC
TGTCGTTGTCGTCGTCGTCGTTACCATTTTGTCATTTGTCTTGTCATTAG
TCATTGTTGCCGTTGTTTTTGCTACACTACTATAGTCTTCCGTTCCCTCC
AAAGGCTTCTGTCAGGGGTCTGCTTGTTTGTGACGTTTCCCCAATTTTTT
TAAGTTCGATGTTTGAGAGGAGATTATCTAACTAAAACCTGTTCGAGTGG
CCCCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:518414..519018+

>mRNA_Ecto-sp6_S_contig82.17444.1 ID=mRNA_Ecto-sp6_S_contig82.17444.1|Name=mRNA_Ecto-sp6_S_contig82.17444.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:518414..519018+ (Ectocarpus species6 EcLAC_371)
ATGGTGGGTGTAAGCGCGGGCGTTGTGTGTATGTGTATCACGTCGGAGAG
TAGTCACACCTGTGCTTTTTTGTGTATTATCCCCCGTCAGTCCGATTCTA
TATTTATTTATTTTTCTACGCTTTATTTTGTGTTCGTTGGTGGAAAAAAG
AAGAGTGTAGCGCGCGTAAAGTCGGGTGTCGTCGTGATTGTTGGATGCTG
CTGTCGTTGTCGTCGTCGTCGTTACCATTTTGTCATTTGTCTTGTCATTA
GTCATTGTTGCCGTTGTTTTTGCTACACTACTATAGTCTTCCGTTCCCTC
CAAAGGCTTCTGTCAGGGGTCTGCTTGTTTGTGACGTTTCCCCAATTTTT
TTAA
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