mRNA_Ecto-sp6_S_contig82.17439.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17439.1
Unique NamemRNA_Ecto-sp6_S_contig82.17439.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17439.1 vs. uniprot
Match: D7G554_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G554_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.510e-28
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MAASTTGEVHPLMAPYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSAFTTLL 165
            MAASTTGEVHPL+APYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSAFT LL
Sbjct:    1 MAASTTGEVHPLLAPYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSAFTMLL 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G554_ECTSI2.510e-2896.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:457424..458753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score115.2
Seed ortholog evalue1e-23
Seed eggNOG ortholog2880.D7G554
Model size171
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0891@2759
Ec32 ortholog descriptionArmadillo-like fold protein
Ec32 orthologEc-00_008550.1
EC2.7.11.1
Cds size171
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350456.8433006-CDS-Ecto-sp6_S_contig82:457423..4574791682350456.8433006-CDS-Ecto-sp6_S_contig82:457423..457479Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 457424..457479 +
1682350456.854406-CDS-Ecto-sp6_S_contig82:458638..4587531682350456.854406-CDS-Ecto-sp6_S_contig82:458638..458753Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 458639..458753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17439.1prot_Ecto-sp6_S_contig82.17439.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 457424..458753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17439.1

>prot_Ecto-sp6_S_contig82.17439.1 ID=prot_Ecto-sp6_S_contig82.17439.1|Name=mRNA_Ecto-sp6_S_contig82.17439.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=57bp
MAASTTGEVHPLMAPYWPGLCSWDGQGSARAVRSLRLAIEEQGGERPGSA
FTTLLR*
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mRNA from alignment at Ecto-sp6_S_contig82:457424..458753+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17439.1 ID=mRNA_Ecto-sp6_S_contig82.17439.1|Name=mRNA_Ecto-sp6_S_contig82.17439.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1330bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:457424..458753+ (Ectocarpus species6 EcLAC_371)
ATGGCGGCGTCCACCACCGGCGAAGTTCATCCTCTGATGGCTCCCTACTG
GCCCGGGTAAGGGCGTGCGGAGTTGTATTTTTTTTTTTTTGTGGGGGGGA
CGAATTACCCGAAGCACTCGTCAACATCAGACCGTTGCGGACAGTAAGTT
TTCCGTGACAAAAGCGGTACATAGGCATCCGACACAGCAGCAGCACGTGC
CAAAAACTTCGAATTGGTGTAATTTTTTGTTTGTTCGAGGTTTAGGTCCA
AGATGGACGTTGTGCCGTGGGAGGTACCGCGGTTGTGGTAAGACACTTGC
GAACCGCGCCAGAGACACTGATTGATTTTGCGAGACGCGGTACGCGGGCG
CCGCGCACAGCTCCGTGTTCCCGGTATCCCCCTGACACGTTGCGTTGAGA
TTTCTTTTCTACAGCTGCTCGTGTTCTTCGCGTGGGTCCTCAGCCCACAC
ATGCCTCTGGATCGGTCGGCAAATGGTACAGTCTGTACCGTTGTCCCCTC
CTTTCGTGTATTCGTGCGCTGCTGCTTCGTGTGCTACACGCACGTTTCGT
TGGCGTGAGCGGTGGCCCCGGCGGTCTTTTCGCCTTCAAAATTCGCGGTG
TACACGGAATACCACCTGTTTCAATTCGTGCTCATGAAGGTGGTCTGCTC
GTGTATAATGGATGGGGTTAGTTAGTGGCAGTGTTGTTGTTGGCGTTGTT
CTTGTCTTCACTCATGGAAAATGGTACGCTCTCCGCTCAACACCTTCCAA
GAGCGGTACCTGTCCAATTGACTCGGACGCCTTCCGTGGTGACAGACCAA
CTACCCAAAGAAGGGTGCACATTACTAAACAGTCTGACATACAAAGCGAT
TATTGTACGACCAGGCTCCTGTTGCAGAGGACGAACAAGATGAAGATAAC
CTTACGACAGTCATGGGTTTGATATAAGAGCGTCGAAGTCGACTGTAACG
GATTCGACCCTCTATAGTATAGTTGAGTACTCTCTTATTCCGGTATAAGA
GGGGGCTCCGATATAAGAGAGTCGAGGGCCTTTTTCACACAAACCTCTCA
TATCGGAGCCAGGACTGTAGTAGAGAGAAAACAGGTTTTTTTTTAAGACA
AGCGTTGTATGCTTGTGCACTTCTTGCTGCATTGTGTGAATGTTGTTGTA
AGCCTTGTGTGCTTGTTGCCGCATTTTGTGTGTGCAACGCCGCTGTCATG
TGTTGCGCGCCGCAGGCTGTGCAGCTGGGACGGACAGGGGTCGGCACGGG
CGGTCCGGTCCCTCCGGCTGGCGATCGAGGAGCAAGGGGGCGAGAGGCCG
GGTTCTGCCTTCACGACGCTGCTAAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:457424..458753+

>mRNA_Ecto-sp6_S_contig82.17439.1 ID=mRNA_Ecto-sp6_S_contig82.17439.1|Name=mRNA_Ecto-sp6_S_contig82.17439.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:457424..458753+ (Ectocarpus species6 EcLAC_371)
ATGGCGGCGTCCACCACCGGCGAAGTTCATCCTCTGATGGCTCCCTACTG
GCCCGGGCTGTGCAGCTGGGACGGACAGGGGTCGGCACGGGCGGTCCGGT
CCCTCCGGCTGGCGATCGAGGAGCAAGGGGGCGAGAGGCCGGGTTCTGCC
TTCACGACGCTGCTAAGGTGA
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