mRNA_Ecto-sp6_S_contig82.17433.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17433.1
Unique NamemRNA_Ecto-sp6_S_contig82.17433.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig82.17433.1 vs. uniprot
Match: A0A6H5K8B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B3_9PHAE)

HSP 1 Score: 528 bits (1359), Expect = 9.410e-186
Identity = 288/348 (82.76%), Postives = 295/348 (84.77%), Query Frame = 1 
Query:    1 MYDNDNXXXASKTQSRSPLPPPGHAAGGTLAVDRALSSQNGTGRSGCP----------QGREQATRRGGRPVRTCCLRRCSKKWPLEKLAQARSGVPAGVSSIHGPXXXXXXXXXXXXXXXXXXXXR-------RKAYLKGCFSRDGSLFYITGGRSSLPVCPLFFSAVTGIPAGVVESAVQEFLQGTKRRRPYSRAPRASSIAKISARLAPSPSPRSREPVPDGWWYSTATGRWYSRTTAPRTGIGADYSNHQLPCESSKVIQAFITDLASHWQPLGKSNRVEMSYPSRKAIYDLFVRDWERRRQDSVAEQPKNSRRWTPTPSYGIFVATWDTWCGHVGLKQSGRHQ 993
            MYDND+   ASK QSRSPLPPPGHAAGGTLAVD+ALSS+NGTGRSG             GREQA R+G RPVRTCCLRRCSKKWPLEKLAQARSGVP GVSSI GP       XXXXXXXXXXXXX        RKAYLKGCFSRDG LFYITGGRSSLPVCPLFFSAVTGIPAGVVESAVQEFLQGTKRR  YSRAPRASSIA ISARLAPSPSP SREPVPDGW YSTAT R YSRT  P  GIGADYSNHQLPCESSKVIQAFITDLASHWQPLG+SNRVEMSYPSRKAIYDLF RDWER+RQD VAEQPKN RRWTPTPSYG+FVATWD WCGHVGLKQSG HQ
Sbjct:   18 MYDNDDDG-ASKAQSRSPLPPPGHAAGGTLAVDQALSSKNGTGRSGAAAAAAIAAGFLHGREQAARQGVRPVRTCCLRRCSKKWPLEKLAQARSGVPIGVSSIRGPPLPDGDGXXXXXXXXXXXXXXITVCAALRKAYLKGCFSRDGGLFYITGGRSSLPVCPLFFSAVTGIPAGVVESAVQEFLQGTKRRS-YSRAPRASSIANISARLAPSPSPGSREPVPDGWRYSTATERCYSRTAEPWGGIGADYSNHQLPCESSKVIQAFITDLASHWQPLGESNRVEMSYPSRKAIYDLFARDWERQRQDGVAEQPKNLRRWTPTPSYGVFVATWDRWCGHVGLKQSGNHQ 363
[Close]
BLAST of mRNA_Ecto-sp6_S_contig82.17433.1 vs. uniprot
Match: D7G184_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G184_ECTSI)

HSP 1 Score: 467 bits (1202), Expect = 1.040e-163
Identity = 261/285 (91.58%), Postives = 265/285 (92.98%), Query Frame = 1 
Query:    1 MYDNDNXXXASKTQSRSPLPPPGHAAGGTLAVDRALSSQNGTGRSG-----------CPQGREQATRRGGRPVRTCCLRRCSKKWPLEKLAQARSGVPAGVSSIHGPXXXXXXXXXXXXXXXXXXXXRRKAYLKGCFSRDGSLFYITGGRSSLPVCPLFFSAVTGIPAGVVESAVQEFLQGTKRRRPYSRAPRASSIAKISARLAPSPSPRSREPVPDGWWYSTATGRWYSRTTAPRTGIGADYSNHQLPCESSKVIQAFITDLASHWQPLGKSNRVEMSYPSRK 822
            MYDND+   ASKTQSRSPLPPPGHAAGG LAVDRA SSQNGTGRSG           C QGREQATRRGGRPVRTCCLRRCSK+WPLEKLAQARSGVPAGVSSIHGPXXXXXXXXXXXXXXXXXXXXRRKAYLKGCFSRDGSLFYITGGRSSLPVCPLFFSAVTGIPAGVVESAVQEFLQGTKRR PYSRAPRASSIAKISARLAPSPSP SREPVPDGWWYSTAT RWYSRTTAPRTGIGADYSNHQLPCE+SKVIQAFITDLASHWQPLG+SNRVEMSYPSRK
Sbjct:    1 MYDNDDHDDASKTQSRSPLPPPGHAAGGPLAVDRARSSQNGTGRSGAAAXXXXIAAGCLQGREQATRRGGRPVRTCCLRRCSKQWPLEKLAQARSGVPAGVSSIHGPXXXXXXXXXXXXXXXXXXXXRRKAYLKGCFSRDGSLFYITGGRSSLPVCPLFFSAVTGIPAGVVESAVQEFLQGTKRR-PYSRAPRASSIAKISARLAPSPSPGSREPVPDGWWYSTATERWYSRTTAPRTGIGADYSNHQLPCEASKVIQAFITDLASHWQPLGESNRVEMSYPSRK 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8B3_9PHAE9.410e-18682.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G184_ECTSI1.040e-16391.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:421207..424548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1050
Hectar predicted targeting categoryother localisation
Exons5
Cds size1050
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350456.476109-CDS-Ecto-sp6_S_contig82:421206..4214341682350456.476109-CDS-Ecto-sp6_S_contig82:421206..421434Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 421207..421434 -
1682350456.4875128-CDS-Ecto-sp6_S_contig82:422180..4222921682350456.4875128-CDS-Ecto-sp6_S_contig82:422180..422292Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 422181..422292 -
1682350456.5041873-CDS-Ecto-sp6_S_contig82:422668..4227731682350456.5041873-CDS-Ecto-sp6_S_contig82:422668..422773Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 422669..422773 -
1682350456.514139-CDS-Ecto-sp6_S_contig82:423408..4234921682350456.514139-CDS-Ecto-sp6_S_contig82:423408..423492Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 423409..423492 -
1682350456.5240457-CDS-Ecto-sp6_S_contig82:424027..4245481682350456.5240457-CDS-Ecto-sp6_S_contig82:424027..424548Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 424028..424548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17433.1prot_Ecto-sp6_S_contig82.17433.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 421207..424548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17433.1

>prot_Ecto-sp6_S_contig82.17433.1 ID=prot_Ecto-sp6_S_contig82.17433.1|Name=mRNA_Ecto-sp6_S_contig82.17433.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=350bp
MYDNDNDDDASKTQSRSPLPPPGHAAGGTLAVDRALSSQNGTGRSGCPQG
REQATRRGGRPVRTCCLRRCSKKWPLEKLAQARSGVPAGVSSIHGPPPPD
GNGGGDDGGGIIVCAARRKAYLKGCFSRDGSLFYITGGRSSLPVCPLFFS
AVTGIPAGVVESAVQEFLQGTKRRRPYSRAPRASSIAKISARLAPSPSPR
SREPVPDGWWYSTATGRWYSRTTAPRTGIGADYSNHQLPCESSKVIQAFI
TDLASHWQPLGKSNRVEMSYPSRKAIYDLFVRDWERRRQDSVAEQPKNSR
RWTPTPSYGIFVATWDTWCGHVGLKQSGRHQHEQEQEQQQQQQYHHRHHH
back to top

mRNA from alignment at Ecto-sp6_S_contig82:421207..424548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17433.1 ID=mRNA_Ecto-sp6_S_contig82.17433.1|Name=mRNA_Ecto-sp6_S_contig82.17433.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3342bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:421207..424548- (Ectocarpus species6 EcLAC_371)
ATGTACGACAACGACAACGACGACGACGCGTCGAAGACGCAGTCAAGGTC
ACCGCTTCCGCCGCCGGGGCATGCGGCCGGCGGGACCCTGGCCGTAGACC
GAGCTCTTTCGTCGCAGAACGGCACCGGCCGGTCGGGGTGCCCGCAAGGG
CGCGAGCAGGCCACTCGACGAGGGGGCCGGCCCGTGAGGACTTGCTGCCT
GCGGCGGTGCAGCAAGAAGTGGCCGCTCGAGAAGCTCGCGCAGGCCCGAA
GCGGGGTCCCCGCCGGCGTTTCTTCCATCCACGGGCCCCCTCCTCCTGAT
GGCAACGGCGGCGGGGATGACGGAGGCGGCATCATAGTTTGCGCGGCGCG
GAGGAAGGCCTACCTCAAGGGCTGCTTCTCGAGAGACGGCAGCCTGTTCT
ACATCACAGGGGGGCGGAGTTCCCTCCCGGTGTGCCCCCTGTTCTTCAGC
GCCGTCACCGGGATCCCGGCGGGTGTGGTAGAGTCGGCCGTACAGGAGTT
CCTCCAAGGGACCAAGAGGCGGTGAGTTGGTCGTCTCCCTTGCGGCCCCG
TCTTGTGCTCTCAATTTGTGCCACCCTTACGACCAGCCCGTGTTTTTTTT
TCCGTTTCAGTTGATGTTTTTTTTTTGCGGCGTCGTCGTGGGCTCTCATC
TCGGCGTGCCACCACCCTTGCTTTCCCGGACGACCCGTGCGTGTTTCTTT
TTACGTTTTCAGTTATTGGTTTTTGTCTAGAGGTTGAACGCTTGGCAGGT
CCTTTACAGCTAAACTTTTTAGTATGCTGTGCCATGCGAATCGATTTCCG
CGGCAGCAGATTAGCTTCTTTTTTTTTTTTACTTTTTTTGGTGCACGTAA
GGATGCTCTCCCCGCTAGGAGATCCTCCCCCGACTGCTCGTGAAAAGAGA
ATGAACATTCATGGGCCGCACAGGCTGGGGCGTGTCCACTTCTTTTGGAT
GATTGCGAAGGTCACGTTGCTCTCGTCCTTCGAAGAAGTTGTTGTTCTGC
TGCTGTTTTTTTCCTGCCATATAGCTGATTAGCATTGTGTGGATGCATGG
CTTCAGCAGGCCTTACTCACGGGCGCCAAGGGCATCATCGATCGCTAAGA
TATCCGCTAGGCTGGCGCCTTCACCTTCGCCACGTTCGAGGTACAGTACT
GTTTAACTTCTTGGTGGGGGGATAAAGGCACGAATTATCTCGTTTTCCCG
GGTGGAATTTGGCGAGACCCCTTCAGACCGAAGAGGCGTGAGTGAGATAC
CACTCTGCTCGAAGATGTATGTATGGACCATTCGAACCTTTCGGATACAA
GCGCGAGCACCACATTGGTCCTTGTACTACACAACAGAGTGGTAGTACAT
CATTTAGTCTCCGTAGCGTGAGGATTTAGCTTCTGTAGCTTTCCGGTGTG
GGGGAGTCCTCCTTAACTTTACCCAGACACCGCGAGGGGTCTGCCGTCTC
TGCTTCTTACGCCTCTGAAAGTCTTGAGCCTCGATGATTGTAACTGTCAA
GCCCTCGATGAAGTGGCGCCGTGTGTAGCTCCTCGTGTGGGAGGGGGGCA
CGGCAGACAACAATATCAAGCTCCGTAGTATACCGCCTACCTTGAAACGA
AGGCTTTTGGAGGGAGTAGGCCGGGTTTCTACGTAACGGCGTGACTCTCT
TTTGGGAGTGGCTACGGCGGAAAACACACATCACAGAAAATAGCAGCGTC
TCAAGAAAGGCGCCATCGTATCTACCCGCTGTTCCGATTCGATAGCGGCA
TCACATCCACCCGCTCTTGCGACAGGGAACCAGTGCCGGACGGCTGGTGG
TACAGCACGGCGACGGGGCGATGGTACAGCAGGACGACCGCACCACGTAC
CGGCATCGGGGCCGACTACTCCAACCACCAGTAAGTGTTATTGTGTGTTA
CTGTGTTGGAATGGGTAAGGGTCATTGTGTTATTTTAGTATGGGTAAGGG
TTATTGTGTTAGTATGGGTAAGGGTTATTGTATTGGTGATCAAGAACCTC
ATGTGGTACGAACTAGGAAGTATCACACTCAATGCTACGCTAGCATCTCG
TTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTACTGCTGTTGCTTTTGTTGTCGCTGTTGTTGTCGTTGTTGTGGTTATT
TTTTTACGCACACATGTATATTCGTCCATACCCCCTTTTTTCTCCCGGTT
GATGATGATGACATCGCCCTAATTTTTTCTGTTTTTCTCAACATGTTTTT
GGTCAGGTTGCCGTGCGAGTCATCCAAGGTCATCCAAGCGTTCATCACGG
ACCTGGCGAGCCACTGGCAGCCGCTAGGGAAAAGCAACCGGGTAGAGATG
TCATACCCTTCGAGAAAGGTGCGAGGATGTCTTTTGTCCCGGTAGACCGT
CATTGCGCAGAAGGATGCTGCACCATTTTTTTCGCCCTTAGGTTTTTTGA
CCAATCAAAACTCTGCGACAAACCCTAAATCCTGTTTTCTTTGTATTCGA
CCGAGGTTTTTCGCCAATAAATATCTGCGTGTCACAATCCCTCTCTCTCG
AAAGCAACCGGGGACAAAGAGATGTCGTACCATTCGACGAAGGTGCGAGG
ATGCCTCGTTTCCGATTGAACCGTCATCCCTCGGACGGAGGCAGCACAGT
TTTGTTTTCGACCTCTAAGGTTTTGTTGGCCAAACAGAAATCGACGACGA
ACCACGAATCCCATTCTTAGTAGTTTTTTGATAATCTTCTTCTTCCCCGC
TGATGCCGATGCAGGGAAGGAAAACGCTACTTCTTCTTGCCAGCTGTGGG
CTGGCCCTCCTTCTGCCTTTTTTTTTTTTCATCTTGCATCACCCCTTGCC
GACACTGCTAAATATGCTCTCACGAGCCTATCCGGAGGAATCACTTGTAT
GCCGGAACATTTTCCCTGGGTAGTTCGGCCGTCTCCTGCCGGTTCAGGCT
ACAATTGTATTTTGGTTTTACTTGTCTCGCTTTTCTTGGCGATGGATTTT
TTTATTGCGGAGCCCTGTGGAGTTCCGCTCACGGAAAGAATGTCCCCAAA
TCGTCTTCTTGACGAAACAAGCACTGCTGTTGTGATTTTTTTTTTGTAAT
TCACTGCGGTGCAGGCCATTTATGACCTCTTCGTACGTGATTGGGAGAGG
CGGCGGCAGGACAGCGTGGCGGAGCAACCCAAGAACTCGAGGCGTTGGAC
CCCGACCCCCAGCTACGGCATTTTTGTGGCGACGTGGGACACGTGGTGTG
GCCATGTCGGCTTGAAGCAGTCTGGACGGCATCAGCACGAGCAGGAGCAG
GAGCAGCAGCAGCAGCAGCAGTACCACCATCGGCACCACCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:421207..424548-

>mRNA_Ecto-sp6_S_contig82.17433.1 ID=mRNA_Ecto-sp6_S_contig82.17433.1|Name=mRNA_Ecto-sp6_S_contig82.17433.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:421207..424548- (Ectocarpus species6 EcLAC_371)
ATGTACGACAACGACAACGACGACGACGCGTCGAAGACGCAGTCAAGGTC
ACCGCTTCCGCCGCCGGGGCATGCGGCCGGCGGGACCCTGGCCGTAGACC
GAGCTCTTTCGTCGCAGAACGGCACCGGCCGGTCGGGGTGCCCGCAAGGG
CGCGAGCAGGCCACTCGACGAGGGGGCCGGCCCGTGAGGACTTGCTGCCT
GCGGCGGTGCAGCAAGAAGTGGCCGCTCGAGAAGCTCGCGCAGGCCCGAA
GCGGGGTCCCCGCCGGCGTTTCTTCCATCCACGGGCCCCCTCCTCCTGAT
GGCAACGGCGGCGGGGATGACGGAGGCGGCATCATAGTTTGCGCGGCGCG
GAGGAAGGCCTACCTCAAGGGCTGCTTCTCGAGAGACGGCAGCCTGTTCT
ACATCACAGGGGGGCGGAGTTCCCTCCCGGTGTGCCCCCTGTTCTTCAGC
GCCGTCACCGGGATCCCGGCGGGTGTGGTAGAGTCGGCCGTACAGGAGTT
CCTCCAAGGGACCAAGAGGCGCAGGCCTTACTCACGGGCGCCAAGGGCAT
CATCGATCGCTAAGATATCCGCTAGGCTGGCGCCTTCACCTTCGCCACGT
TCGAGGGAACCAGTGCCGGACGGCTGGTGGTACAGCACGGCGACGGGGCG
ATGGTACAGCAGGACGACCGCACCACGTACCGGCATCGGGGCCGACTACT
CCAACCACCAGTTGCCGTGCGAGTCATCCAAGGTCATCCAAGCGTTCATC
ACGGACCTGGCGAGCCACTGGCAGCCGCTAGGGAAAAGCAACCGGGTAGA
GATGTCATACCCTTCGAGAAAGGCCATTTATGACCTCTTCGTACGTGATT
GGGAGAGGCGGCGGCAGGACAGCGTGGCGGAGCAACCCAAGAACTCGAGG
CGTTGGACCCCGACCCCCAGCTACGGCATTTTTGTGGCGACGTGGGACAC
GTGGTGTGGCCATGTCGGCTTGAAGCAGTCTGGACGGCATCAGCACGAGC
AGGAGCAGGAGCAGCAGCAGCAGCAGCAGTACCACCATCGGCACCACCAC
back to top