mRNA_Ecto-sp6_S_contig82.17430.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17430.1
Unique NamemRNA_Ecto-sp6_S_contig82.17430.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: D8LPW2_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 4.820e-14
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   10 GLLETQGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRA 135
            GLLE+QGKY E D LYLRAIEIGEK LGPDHP LA SLNNRA
Sbjct:   45 GLLESQGKYDEGDPLYLRAIEIGEKTLGPDHPALATSLNNRA 86
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.210e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   13 LLETQGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRA 135
            +LE  GKYAEAD LYLRAIEIGE  LGPDHP LA  LNNRA
Sbjct:  608 VLELMGKYAEADPLYLRAIEIGENTLGPDHPALATQLNNRA 648
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.830e-10
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 NLAGLLETQGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNR 132
            N+   +  +GKYAEAD LYLRAIEIGEK LGPDHP LA  LNNR
Sbjct:  160 NVTWTVRFRGKYAEADPLYLRAIEIGEKMLGPDHPDLATRLNNR 203
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: A0A7S3NLU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.460e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 NLAGLLETQGKYAEADRLYLRAIEIGEKALGPDHPHLA 114
            NLAGLLE+QGKY EA  LY RAIEIGEK LGP+HP+LA
Sbjct:    4 NLAGLLESQGKYNEAKPLYERAIEIGEKTLGPNHPNLA 41
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.290e-10
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 LAGLLETQGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRA 135
            LA +LE QGK+AEAD LYLRAIE+ EK LG DHP LA S+NNRA
Sbjct:  333 LALVLEKQGKHAEADPLYLRAIEVAEKMLGRDHPDLATSINNRA 376
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 5.940e-9
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   28 GKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRA 135
            GKYAEAD LYLRAI+IG+K LGPDHP LA  LNNRA
Sbjct:   10 GKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRA 45
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 3.180e-8
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   25 QGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRA 135
            QGKY EADRL LR IE+GE  LGPDHP +AI LNNRA
Sbjct:  297 QGKYVEADRLCLRDIEMGEDTLGPDHPDVAIRLNNRA 333
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: A0A2W4QJT5_9GAMM (Uncharacterized protein n=1 Tax=Candidatus Methylumidiphilus alinenensis TaxID=2202197 RepID=A0A2W4QJT5_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 6.740e-8
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 LAGLLETQGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRA 135
            +A L  +QGKYAEA+ LY  ++ I EKALG DHP +A+SLNN A
Sbjct:    1 MAELYRSQGKYAEAEPLYQSSLAIAEKALGKDHPDVAVSLNNLA 44
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BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 8.380e-8
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   13 LLETQGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRA 135
            L E +G +AEAD   LRAIEIGEK LGP+HP LA+ LNNRA
Sbjct:  639 LHELEGNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRA 679
[Close]
BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.380e-7
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   28 GKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRAM 138
            G+  EAD LYLRAIE+GEK LGPDHP LA  LNN+A+
Sbjct:    8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAV 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPW2_ECTSI4.820e-1483.33TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
D7G6W2_ECTSI1.210e-1078.05NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5K0C4_9PHAE2.830e-1070.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NLU4_9STRA4.460e-1078.95Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A6H5KSC7_9PHAE5.290e-1072.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L045_9PHAE5.940e-980.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQL3_ECTSI3.180e-875.68TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A2W4QJT5_9GAMM6.740e-859.09Uncharacterized protein n=1 Tax=Candidatus Methylu... [more]
A0A6H5JJK0_9PHAE8.380e-868.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM3_ECTSI1.380e-770.27Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:390054..390773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score72.4
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2880.D8LPW2
Model size281
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Ec32 ortholog descriptionTPR repeat-containing protein
Ec32 orthologEc-23_002730.1
Cds size279
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350453.6364121-CDS-Ecto-sp6_S_contig82:390053..3900801682350453.6364121-CDS-Ecto-sp6_S_contig82:390053..390080Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 390054..390080 +
1682350453.64925-CDS-Ecto-sp6_S_contig82:390258..3903841682350453.64925-CDS-Ecto-sp6_S_contig82:390258..390384Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 390259..390384 +
1682350453.6584537-CDS-Ecto-sp6_S_contig82:390646..3907721682350453.6584537-CDS-Ecto-sp6_S_contig82:390646..390772Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 390647..390772 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17430.1prot_Ecto-sp6_S_contig82.17430.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 390054..390772 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17430.1

>prot_Ecto-sp6_S_contig82.17430.1 ID=prot_Ecto-sp6_S_contig82.17430.1|Name=mRNA_Ecto-sp6_S_contig82.17430.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=93bp
NLAGLLETQGKYAEADRLYLRAIEIGEKALGPDHPHLAISLNNRAMLLKN
LGKYEEAEPLNRRSLAIDEEVYGPDHPNVATGLSNLAGLLESQ
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mRNA from alignment at Ecto-sp6_S_contig82:390054..390773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17430.1 ID=mRNA_Ecto-sp6_S_contig82.17430.1|Name=mRNA_Ecto-sp6_S_contig82.17430.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=720bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:390054..390773+ (Ectocarpus species6 EcLAC_371)
AACTTAGCGGGGTTGTTGGAGACACAAGTGAGAACCAAAGGATGCTTCTA
GATACTGCGTGCCAAGGTATGGCAAGCGATACACGACTTGGTTTCGAAAC
ACACGAACATGGCCACAACGCTCAACGACCGCGCGCTCATTCGTCCGCAA
TGAGCTTTGCTCGCCTTGGCCAAGCTCGCAACAAGCTTTTCCTTTCCCCT
TCCAGGGCAAATATGCTGAGGCGGACCGTCTGTACCTTCGAGCTATTGAG
ATCGGAGAGAAGGCGTTGGGGCCTGACCACCCACATCTGGCGATATCGCT
CAACAACCGGGCGATGTTATTGAAGAACCTGGTGAGAACCGAACAAGCTT
CTACACGCTTGTAGCACAAAATGCTCCTCTGAAGTTCGATTTTTCTGAAA
TCCGACTCTCTGCCACGCTATTCACCGCAGATCATGACAAGCGTGGTGAG
ACAGAGCCACTCTGTGAACAGCCACGAGCCCTTGACCGATGTGTTGGGCC
TGAGGCAGCCGGATGTCGCCCAGGCCTTTGTTCCCCCGCACATCCAGCGT
CGCCAAACGAATTTCTCTCCTACTCTTCTTATTCACATTCCAGGGCAAGT
ATGAAGAGGCCGAGCCTCTGAACAGACGCTCCCTGGCCATCGATGAGGAA
GTTTACGGTCCTGACCACCCGAACGTTGCTACAGGTCTCAGCAACTTGGC
GGGGCTATTGGAGAGCCAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:390054..390773+

>mRNA_Ecto-sp6_S_contig82.17430.1 ID=mRNA_Ecto-sp6_S_contig82.17430.1|Name=mRNA_Ecto-sp6_S_contig82.17430.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:390054..390773+ (Ectocarpus species6 EcLAC_371)
AACTTAGCGGGGTTGTTGGAGACACAAGGCAAATATGCTGAGGCGGACCG
TCTGTACCTTCGAGCTATTGAGATCGGAGAGAAGGCGTTGGGGCCTGACC
ACCCACATCTGGCGATATCGCTCAACAACCGGGCGATGTTATTGAAGAAC
CTGGGCAAGTATGAAGAGGCCGAGCCTCTGAACAGACGCTCCCTGGCCAT
CGATGAGGAAGTTTACGGTCCTGACCACCCGAACGTTGCTACAGGTCTCA
GCAACTTGGCGGGGCTATTGGAGAGCCAG
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