mRNA_Ecto-sp6_S_contig82.17426.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17426.1
Unique NamemRNA_Ecto-sp6_S_contig82.17426.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: D7FZH1_ECTSI (Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH1_ECTSI)

HSP 1 Score: 645 bits (1663), Expect = 2.080e-231
Identity = 377/389 (96.92%), Postives = 378/389 (97.17%), Query Frame = 2 
Query:   32 MRPTGRALAAVATAVVAAKGAQAFVAPSGASCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGEDD--HCPPADAAREGKGRWAGARRSLARGAASLATFTVGATALSGLSADVQHRLNSRDGAAVVVSIPAAMELAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARKPFPKPRLGRMWAF 1192
            MRPTGRALAAVATAVVAAKGAQAFVAPSGASCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         HCPPADAAREGKGRWAGARRSLARGAASLATFTVGATALSG+SADVQHRLNSRDGAAVVVSIPAAME AEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFY EGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARKPFPKPRLGRMWAF
Sbjct:    1 MRPTGRALAAVATAVVAAKGAQAFVAPSGASCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCPPADAAREGKGRWAGARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYVEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARKPFPKPRLGRMWAF 389
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: A0A6H5L2Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q1_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 3.350e-120
Identity = 235/247 (95.14%), Postives = 237/247 (95.95%), Query Frame = 2 
Query:   32 MRPTGRALAAVATAVVAAKGAQAFVAPSGASCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGE--DDHCPPADAAREGKGRWAGARRSLARGAASLATFTVGATALSGLSADVQHRLNSRDGAAVVVSIPAAMELAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 766
            MRPTGRALAAVATAVVAAKGAQAFVAPSG SCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       DDHCPPADAAREGKGRWA ARRSLARGAASLATFTVGATALSG+SADVQHRLNSRDGAAVVVSIPAAME AEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPT+PGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG
Sbjct:    1 MRPTGRALAAVATAVVAAKGAQAFVAPSGPSCPSSLRAGATSRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDHCPPADAAREGKGRWARARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTKPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: A0A6H5L2U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U4_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 2.150e-92
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 2 
Query:  767 YQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARKPFPKPRLGRMWAF 1192
            YQND+GVDE MDFKLEPDMHSFQKARRLGLDVSPAAAN D+PVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKA ASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDAR+PFPKPRLGRMWAF
Sbjct:   21 YQNDDGVDEMMDFKLEPDMHSFQKARRLGLDVSPAAANTDIPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKATASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQFGFFASTEGAEFIKQARDARRPFPKPRLGRMWAF 162
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: A0A835Z8Y7_9STRA (Tic22-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y7_9STRA)

HSP 1 Score: 169 bits (429), Expect = 3.100e-46
Identity = 103/270 (38.15%), Postives = 157/270 (58.15%), Query Frame = 2 
Query:  335 RRSLARGAASLATFTVGATALSGLSADVQHRLNSRDGAAVVVSIPAAMELAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTD-EFNQFGFFASTEGAEFIKQAR 1141
            ++ LA+ AA  A  T GA ALS         + S    +  V     M  AEASV + F +RT++EKLAN+PAF + N+ G+ YL+  E G  Q  +FFT+ +DA +ML EM+Q      +ARIL++ ++KA+ M+K  P+ TG  ND G  E ++F+    +H  +K     +     AA   VPVFYA GL + ++G  VKP+F D  +L++AW KAA ++P+MP  P ++V+N+P++++ ME    +   FGF  +    E IK+ R
Sbjct:   19 KKRLAQVAAGFAVATAGAPALS-------QGIRSGHSTSGQVLSEVLMPSAEASVFKKFNQRTLKEKLANVPAFAIVNRGGNFYLNIKETGG-QQGMFFTSFEDANDMLFEMLQSPGLNGDARILIIPLDKAFDMIKH-PRATGMVNDMGQPETIEFRFHEAVHPREKMELYRVQDKQGAA---VPVFYAGGLTIVKEGVKVKPVFFDVKELLDAWFKAAKTDPNMPRVPDIQVYNLPELLLLMESDPTKHTDFGFVPAGSSVEAIKEVR 276
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: A0A0G4ED78_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED78_VITBC)

HSP 1 Score: 125 bits (314), Expect = 1.510e-29
Identity = 75/216 (34.72%), Postives = 122/216 (56.48%), Query Frame = 2 
Query:  503 RPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVK-AGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANID-VPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMEL-TDEFNQFGFFASTEGAEFIKQAR 1141
            + F  R ++E+L+++P F++TN    PYL+   PGE Q A+ FT+ ++A  ML EMVQ +    +AR+ V+S+EKA+   + A P+ TG   ++G +  M FK  P      +    G  V+        +PVF A GL+V ++G  + PLFMD  DL  AW++   + PD P +P V V+N+ DV++  E   +    +G   S++  +F+K+ R
Sbjct:   66 KKFSSRPMDERLSSVPVFLITNSYALPYLTQVRPGE-QTALMFTDPEEANTMLNEMVQTAGPGADARLFVISLEKAWAYARRAEPRRTGIVGEDGKEAVMTFKFHP-----PQVENAGNYVTLLGRRTKMIPVFEATGLDVTKNGDKLCPLFMDLEDLEAAWERMHRARPDTPPKPKVSVYNLLDVLLHRERQANGLGPWGIVPSSKALDFVKKNR 275
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: R7QF31_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF31_CHOCR)

HSP 1 Score: 118 bits (295), Expect = 3.270e-27
Identity = 74/217 (34.10%), Postives = 112/217 (51.61%), Query Frame = 2 
Query:  485 AEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDE--FNQFGFFASTEGAEFI 1129
            A A     F K+TV EKL+ +P F VTN  G PYL+  +    Q+ + F +  DA  ML +M +++   ++AR+ ++ ++KAY MVKA P+ +G +   G +  M F+  PD    + A  L   +        +PVF A+GL +++    V PLF+   DL  AW K   SN D+P   +V V N+  +I  ME   E      GFFA     E++
Sbjct:   14 APAFAAAKFSKKTVSEKLSQVPVFAVTNASGQPYLANMDGSGSQIGLIFFSHHDALNMLKDM-KKNPGASDARVYIMGLDKAYEMVKAKPQPSGIRGAAGEELTMVFRFFPDSKQVKAAEGLQRKLRRRRGVEGIPVFVAKGLTLRKGSENVVPLFLTKEDLDSAWSKLRDSNKDLPNNASVVVGNLLYIIQQMESDGEPELRNLGFFAPKASVEYV 229
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: A0A7J7IP27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP27_9RHOD)

HSP 1 Score: 115 bits (288), Expect = 3.200e-25
Identity = 69/222 (31.08%), Postives = 120/222 (54.05%), Query Frame = 2 
Query:  509 FEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNE-ARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELT------------DEFNQFGFFASTEGAEFIKQ 1135
            + ++T++EKLA +P F VTN+ G P+L+  E G  Q+ + F +  DA +ML ++ + S  + E ARI V+ +++A+ MVK+ P+ +G +   G + +M F+  P+    + AR L            VP F A+GL +++    V P+F+D  DL +AW +      D+P  P V+V ++ +VI+ +E               +  +  FF S++  EF+KQ
Sbjct:  135 YSRKTLDEKLAQVPVFAVTNESGQPFLAAMERGT-QVGLIFFDPSDAMKMLEDLKRSSGKEAEDARIFVMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQVEHARSLARKTKQPLVR-GVPCFVAKGLTLRKGKEFVIPVFLDKRDLEDAWSRLRQDMSDLPKHPEVEVGDLIEVILRLEEAAKNPKSLDEKELQDIRRVAFFPSSKSVEFMKQ 354
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: M1URJ3_CYAM1 (Similar to chloroplast inner membrane protein Tic22 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1URJ3_CYAM1)

HSP 1 Score: 114 bits (284), Expect = 1.010e-24
Identity = 74/252 (29.37%), Postives = 133/252 (52.78%), Query Frame = 2 
Query:  443 GAAVVVSIPAAMELAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNE-ARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELT------------DEFNQFGFFASTEGAEFIKQARDARKPF 1159
            GA + V + A    A  +    + ++T+ EKLA +P F VTN+ G P+L+  E G  Q+ + F + DDA +ML ++ + S  + E ARI ++ +++A+ MVK+ P+ +G +   G + +M F+  P+    + AR +            VP F A+GL +++    V P+F+D  DL EAW +      ++P +P ++V ++ +VI+ +E               +  +  FF S++  EF+K  R++ K F
Sbjct:  105 GAGLQVLLGAPAVSAAKTPHARYSRKTLSEKLAQVPVFAVTNESGQPFLAAMERGL-QVGLIFFDPDDAIKMLEDLKRSSGKEAEDARIFIMGLDRAFEMVKSKPQPSGLRGPRGDELKMVFRFYPNQQQLEYARTVAKKTKQPTVR-GVPCFVAKGLTLRKGKEFVIPIFLDKRDLDEAWNRLRQELAELPKQPEIEVGDLIEVILRLEEAAKNPKSLNETELQDLRRVAFFPSSKSVEFMK--RESAKQF 352
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: A0A4D9CLW8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLW8_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.170e-21
Identity = 77/234 (32.91%), Postives = 120/234 (51.28%), Query Frame = 2 
Query:  485 AEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKA---RRLG----LDVSP----------AAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQF-GFFASTEGAEFIK 1132
            AEA  L+PF +RT++EKLA++P F+V N++GSPYL P E G   + V F +  DA+EML  MVQ +    +AR+LV+ ++K   +V++ P+  G       +  + F+  P +   + A   R++G    LD  P             N  +PVFY   L + +   +VKP+F    DL  AW ++ A      A   VK  +   V+  M    E  +  GF AST+  E+++
Sbjct:   48 AEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGF-DVGVVFLDPADAEEMLQSMVQ-NPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGA-APGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVE 271
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BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Match: W7TG29_9STRA (Tic22-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG29_9STRA)

HSP 1 Score: 103 bits (256), Expect = 9.600e-21
Identity = 77/234 (32.91%), Postives = 120/234 (51.28%), Query Frame = 2 
Query:  485 AEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDEGVDERMDFKLEPDMHSFQKA---RRLG----LDVSP----------AAANIDVPVFYAEGLEVKRDGGLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDEFNQF-GFFASTEGAEFIK 1132
            AEA  L+PF +RT++EKLA++P F+V N++GSPYL P E G   + V F +  DA+EML  MVQ +    +AR+LV+ ++K   +V++ P+  G       +  + F+  P +   + A   R++G    LD  P             N  +PVFY   L + +   +VKP+F    DL  AW ++ A      A   VK  +   V+  M    E  +  GF AST+  E+++
Sbjct:  147 AEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVPLETGF-DVGVVFLDPADAEEMLQSMVQ-NPQTADARVLVMGLDKGLELVQSEPRRNG-------NHMLVFQFCPSVQQLKNANGFRKVGWKAVLDKRPDKWRFGFNRQGVRNAGLPVFYCPDLRIAKGREMVKPVFFSMEDLYYAWDRSTAGKHGA-APGEVKTLDFLRVVEWMLNEPEQTRLVGFHASTQAQEYVE 370
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FZH1_ECTSI2.080e-23196.92Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5L2Q1_9PHAE3.350e-12095.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2U4_9PHAE2.150e-9295.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8Y7_9STRA3.100e-4638.15Tic22-like protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A0G4ED78_VITBC1.510e-2934.72Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
R7QF31_CHOCR3.270e-2734.10Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7J7IP27_9RHOD3.200e-2531.08Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1URJ3_CYAM11.010e-2429.37Similar to chloroplast inner membrane protein Tic2... [more]
A0A4D9CLW8_9STRA2.170e-2132.91Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TG29_9STRA9.600e-2132.91Tic22-like protein n=1 Tax=Nannochloropsis gaditan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:338730..344742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score649.4
Seed ortholog evalue1e-183
Seed eggNOG ortholog2880.D7FZH1
Model size1195
Hectar predicted targeting categorychloroplast
Exons5
EggNOG free text desc.Tic22-like family
EggNOG OGs2DZXZ@1,2S7E9@2759
Ec32 ortholog descriptionTic22-like
Ec32 orthologEc-23_002870.1
Cds size1164
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17426.1prot_Ecto-sp6_S_contig82.17426.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 338761..344742 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.8472445-UTR-Ecto-sp6_S_contig82:338729..3387601682350455.8472445-UTR-Ecto-sp6_S_contig82:338729..338760Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 338730..338760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.8563764-CDS-Ecto-sp6_S_contig82:338760..3393451682350455.8563764-CDS-Ecto-sp6_S_contig82:338760..339345Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 338761..339345 +
1682350455.86773-CDS-Ecto-sp6_S_contig82:341068..3412171682350455.86773-CDS-Ecto-sp6_S_contig82:341068..341217Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 341069..341217 +
1682350455.8764358-CDS-Ecto-sp6_S_contig82:342127..3422781682350455.8764358-CDS-Ecto-sp6_S_contig82:342127..342278Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 342128..342278 +
1682350455.885225-CDS-Ecto-sp6_S_contig82:343296..3434131682350455.885225-CDS-Ecto-sp6_S_contig82:343296..343413Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 343297..343413 +
1682350455.8962553-CDS-Ecto-sp6_S_contig82:344580..3447421682350455.8962553-CDS-Ecto-sp6_S_contig82:344580..344742Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 344581..344742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17426.1

>prot_Ecto-sp6_S_contig82.17426.1 ID=prot_Ecto-sp6_S_contig82.17426.1|Name=mRNA_Ecto-sp6_S_contig82.17426.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=388bp
MRPTGRALAAVATAVVAAKGAQAFVAPSGASCPSSLRAGATSRQQQQQPY
TCSATNNRRSRRAPPPPLAAAAAAAARGAGEDDHCPPADAAREGKGRWAG
ARRSLARGAASLATFTVGATALSGLSADVQHRLNSRDGAAVVVSIPAAME
LAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPTEPGEPQMAVFF
TNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTGYQNDE
GVDERMDFKLEPDMHSFQKARRLGLDVSPAAANIDVPVFYAEGLEVKRDG
GLVKPLFMDPADLVEAWKKAAASNPDMPAEPTVKVFNMPDVIVAMELTDE
FNQFGFFASTEGAEFIKQARDARKPFPKPRLGRMWAF*
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mRNA from alignment at Ecto-sp6_S_contig82:338730..344742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17426.1 ID=mRNA_Ecto-sp6_S_contig82.17426.1|Name=mRNA_Ecto-sp6_S_contig82.17426.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6013bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:338730..344742+ (Ectocarpus species6 EcLAC_371)
CAACAGCAGTCAGCAGTGCGAAAGATAGATCATGAGGCCCACCGGAAGAG
CGCTCGCCGCCGTGGCCACGGCGGTAGTAGCAGCAAAGGGAGCTCAGGCC
TTCGTGGCGCCAAGTGGCGCCTCCTGTCCTTCTTCCTTGCGAGCAGGAGC
GACCTCTCGACAGCAACAGCAACAACCGTACACGTGCTCGGCTACGAACA
ACCGACGGTCTCGACGAGCCCCTCCGCCGCCGTTAGCAGCGGCGGCGGCG
GCAGCAGCAAGAGGGGCGGGAGAGGATGACCATTGTCCTCCTGCCGATGC
CGCACGGGAGGGTAAGGGGCGGTGGGCAGGGGCCCGCAGGTCTCTCGCGC
GCGGGGCAGCCTCCCTTGCGACTTTCACAGTCGGGGCGACCGCGCTGTCG
GGCTTGTCTGCCGATGTGCAGCACAGGCTCAACAGCCGCGATGGCGCTGC
GGTAGTGGTGTCGATTCCGGCCGCTATGGAGTTAGCGGAAGCCTCTGTGC
TCAGGCCGTTCGAGAAGCGCACCGTGGAGGAGAAGCTGGCAAACCTCCCG
GCCTTCATGGTGACCAACAAGAAGGGCTCGCCCTACCTTTCGCCCACGGA
ACCGGGCGAACCGCAGGTATGTTCAAGCTCCGAGCAGGGGCGGAGCGAAA
GGTGCCGCATCGCCGCATCCATCATGTTTGGAGCGGAGGATGAGTTCATG
ATTGTGATTGGCATTGATCTGGCCGGTGTTGTGTGGGCGTCTACTGCTGC
TATGCGGCTCACAAATCGTTCGGTTGATCCCATCCCTTGCTACATGTACT
CCCAGAATAGCACACGTCCAACACACAGAGATGGACGGTGGCAGCACTTG
CAATGCCTACCTACTACGGCGGTGTATCAGCACAGCCGTTGCACTCGACG
ATGCACGCATCGCGCAGATTTCTCGGTGAAAATCTGATGCGGTGTCAATC
ATGTCGTGTACACAAGAGGTTTACAACGATTGCCAGCGCTGAATGTGCGG
CAGTGAAACAGAGCTGGATCTATCTGTGCGCCTTCAAAGGCTGCCTGCCC
CCACACAGGCATGGTGGTTGCAGCTCTGCATCCCGTTCATGATCCGTTTA
CCCTCCACATTGTGCTGTTGCGATGTGCTCCAAGAGGCATGTAGCACCGA
TGAAACGGCTGTTAACAGTAGTAGTATTTGGCCGCTTCGTGCTGGCAGCG
TACCCTCCGACGTTGAGTTTCGTGCGAGCATATGCGGCTGACCCGACTCT
CGACTCCATCGCAAAGAAGCATCCTCTATTTTGCAGTTTGAGCTTGGCGT
GAATATTTTCAATCCAACAGCACACTTTTGAACTAATTTCATGACACCCG
CGCTACACATATCACCTTTAAGCGTATGCTCGCTGTTTGGCAGACCGCAT
AGCAAACCAAGATGCCGAACCGGAAACGCACTTCCTTGTTGTCGAATCAA
ATCCTTCCAGCAAGTGACCACCCTGTCCTACTACCGGGTTGTGAACCATT
TACCATGGTGGTATGCATATGTAGCATCGCATTTCCTCAGGGCGCGAGAT
TCTGCCACCCGACCTCTACCGCAGTATTTGGCGCGTGACCCATTTTCGTT
GAAAGTACTTCGACCTCGGTGGATGGTGCTGAGTCTTTTGTTGTTGTTGT
CTTCACATTAGTACCTTCTTCTGTCCGTACTAGTCAACACTTGACAGGGT
CGTCCCGTGGGTCACAGGCTAACGTACCAACGTACCCAAGCGAAAATATG
GATCCGAAGGGCCCGCAAGCCAATAGAAGTCAACGACAGATAGTCTAGGC
CACTCCTTCTGTGGACAGGGCTAATAAGTCTTGTCCAACCCTATTTACGA
TATCACCGACAACAAAGGGGTGCCGGTATAGGGATTGGCAGCCGAGAACA
CTGCACAACCAGGACACAGAAAGACCATCGAAGTTTACCCGGCGCCTGCC
TCCCCAACACCTTTTATGAAACTTCCTGTTCATAGCTATGGTACTTGCTC
AGGACACCCCAAGCAATGATTTGTGGTTGCTGTTGCGACAACGAGTACAA
CGAACTGACACATCCCACCAAAGGAACGATTGTGTTATTGCTGGAGCAGC
TGGAAGCTTGACGCGGATACTGATAGCTCCGATCTATACGGCATGATTGG
AGGAGCGTGATTTTAGTCGATCAAGGAGGAAGAAAAATGTTGCCGTCGGC
ACACATCGATTTTGCATCCGTTTGCTTGGAGTCGTTACCATTGACTGCAT
CTGTCGGTTGCACACATGTTCCGGGAAGCATTTTGTAACTAATTTTTCGC
TTTTTCCCCGAACACTCCCTTGCGTTTTGCCTCTCTTAGATGGCTGTTTT
CTTTACGAACGTCGACGATGCGAAGGAGATGCTTATGGAGATGGTGCAGG
AATCGACTTACCAGAACGAAGCACGCATTCTTGTTGTGAGCATGGAGAAG
GCCTACGGCATGGTGAAGGCGGGTCCGAAGCTGACCGGGTGAGTTGCCGG
CGCGATGCTAATGCTGTTGTTGTTGTTGGCGTTGGGTTTTGGTGCCACCG
CTTCTTCTGTTGTATTCCACGCGCTCAAGTCCAGTCTGGTGGTGGTGTTT
TTTTTCGCCGCTGGCTCCCACGGGGGGTGCAAGCGTCGATGGGGTTGGAG
ATGTCTCTTTGGGGACTATCCGTGATCGTGCCGTATGTTGTTGGAGCTCT
TTTGCGCCGAAGAATAAGCTTTGGATTTGGGTTCGCAGGGAGGTAGGTCC
CAAATCCATAGTACGTTTCGGTAGTTGGCGTTCCCAGCAGACGAAAAAGG
TCGGCAGGGCGAGTTAAGTCCCATCTCGGTGCCGTCACTTTGATCCCTAG
GAACAACCTAACCCTCTATCCTCTATCAGGGCTTTTCCCCCGTTTTTGAT
GGCGTGGATTAGGTACGTGTGTTGGGTACGGGACCCCCTAGTGCAAATCC
CCGCTTCAGAAGCACCGACAACGGCCCCGTAGTGCGGCTAGTCTATTGTA
GTAGTGCTGCATGCACCCGAGAGACGAGAGCTAGGAGTTCCAACCAACAC
TCAAGGTTCGTACACCCGGGGTGCAGTTTAACTTACGGTATCCCGCGAAA
AGGCGGCCTCCCGTTCGACGACTCTCCCACATCTTGCGATCTACCGCTGG
AAAGGCCAACTTCTTCGAAATAATGCAACAACTGTGTCCATCCGGGGGCG
CTCCCTTGTCGTGTCCGGCTCCCGAAAAATTCAATGCACGTGTTAGGGGC
GCGTTCCCACTCTCCGTTCCTGTGGCGAGCACAATTCCACGATTTGTGGC
CGCATGCATGACTATGAGTACCCCCCCCCCCTCAATCTTGGCGGGGCTTA
TGAACAGTTCACCTCCCTAAAGGTTTCGACCCGCGGCCGTACCCCCAGGT
ACCAGAATGACGAGGGGGTGGACGAAAGGATGGACTTTAAGCTAGAGCCG
GACATGCACTCGTTCCAGAAGGCGAGAAGGCTGGGGTTGGACGTCAGCCC
CGCCGCCGCGAACATCGACGTCCCGGTGTTCTACGCAGAGGGTTTGGAGG
TGGGGGTGGTACGCTTGGGGTTTCATCCTGAAGCTGTCGTGTGGCGTTTC
TTCCCCGGAAGGCGTGGGGGCAACAGTTCCCCGGAACCACACTCCTTCGC
CGCCGGTGTTTTTGCTGAGTTTGTTGGTTGGGAGTGACGCCCCCCATGTA
AGGGGGCCCACCGCAGGGGGGGGAGGGTGCACTCATAGCCGTGCATGGTA
GTCGTTAGACCATTGACCTCGCATCCCTTCAAACCGGGGACGGAGCGCGC
CGGGTTTTCACCGGACGAGAGTAGCACATCACCAAGCGCGAAGTGCTGCG
AGGTGTTCGGCAACTCGCAAGTGGGGAGGGGGGTTGGTGAACCCCCCCGT
CTTCCCTTCGCGGTGTTGCAGGGGTTGGTTTGAGTGTCTGAGTGCGTCGC
GATACTGTTACTGTACCCCGTGGGTTAACTTTCCCGCAGGTGGCCTCGCT
TTTTTTCTTCATTTTTCTGACATTGTCGAGACAAATCTGCGGCTCACCTT
GAAGCATGGGCGTGTAGTGACTGCTGTAGCGGTTGGAATCAATCGCCCCA
CCCTCGAAAACACATCACGGGGCGGGCCaccgtttttttttacgcctTTG
GCTTGTTGCTGCGGAGTTTTCAGAAGGGAAACAGGCACACGCGATCGCTT
GCTTCCCGGCCCCTACGCCTCGTCCACTGATGTGTGGGTCGTTGCAATTC
GCCTGTTTCGTATCCGCACCCACCCCCTCTGCTTCACTCTTTGAGTGTGC
ATCTGGGCCGATCGACTTGACGTATCATTGGAAGAAACAAACCCCTTTGG
CTTCGACCTCGAGAACCTTGTATACCCTCTTGAGAACAGAAcGTAAAATA
ACTCCAGTGGTTACCTTGCTCCAGTGTGACCTTGGCCGGTGTGTCAAGCA
CGCACAGAAGGGCGTGGACTATTAACAGCACCAGAAACGAACCACGTGGA
AATCATCTCCCGACCGTCTGGCCACCATCTCCTGCGACCGTCTTTGTTCT
TGCGCTGACGGGGACAGGTTAAGCGGGATGGAGGGTTGGTGAAGCCGCTC
TTCATGGACCCGGCCGACCTGGTTGAGGCTTGGAAGAAGGCGGCCGCTTC
GAACCCAGATATGCCCGCAGAGCCGACGGTCAAGGTGCGCCTTACTCCCT
CCTATTGCTCCCGTTGCTGTCGATTGTTTCCAACGCCTTGGCCATGCCGG
AAGCAACGTTTGCGAGAAAGTTAACTCGGAGGGTGACCGCTGTCAAGTGT
CGTCCATCTTCGTAGTGTTACGAAGAACCAAGCCCTTTTTGTTGCCTCGT
GATGTTGATAGTTTTTTTGTTTTCAGCCCCTCCCAAGTCATTGGTTATGT
TTTCCCACCGGCGTTTGGATGGGGGCCACTTGCGCCGGACCGCTCGGCCT
CTCACCAAGTGAACCGTCCAACCGGTTCGCAAGCATCAACTGCGTCACGT
GCGGCGGTACGCATCGCATGCCCGGGGCGGGGGCGAGTCAGTTGTCTTGG
ACAAGCCGGGAGGTACTGCCCGCCTCTCTTCAAACATGGTGGACGTCGTT
GTATACGTGTGTCGTGTGACGTTTGCCCAAGAAGTGTGGCTTGGTGCGAA
ATTCGTGGCACGATCTGATGAATGGTTGCGGTGAGGGGCCTAACCCTAAG
ACCGAGAGTCGCTCCGGTAGAAGTACCTGTTTTCTCCCCCGCAGTAAATT
TTCTGCTCAGGAATGTTCGCGATGTCATCCGTTGTCCGCTTGTCGGGGAG
GCGGTTATTCACTCCTTGTGGTTTTCGTTCGGTAGAAAGCCTGTTCCGTA
TTGCATTTGCGTTGTGTTTGCCGGTTTTTTCTTCGCCGCCTTCTGCCTGG
TGACCGCGTAAAATGGTGTCGTGTCAGCCTTTTGCTAGACCGGTCTGCGT
CTCACTCATGCCCATCCCGACCTACGCGCCCGCCTCGAGATATCGAGGTT
TTTCCGGCGTTCCATCGGATTGTATGGTCGTTGGCAGCCTTGGGAAAAAT
GTTGTTTGTGGATCTGATTCCTAGATTACGCTGGGCAGCGAGTACGTTTG
CCTGGGATGTCGGCCCATCCTCCTACTCTCCCTGCGGATTTCAGACTTCA
CCCCCCTAGAGCACGAGTATGTTTGCAGGCGTCGCACAGCTTCTTTGCGT
TGGAAGGACTCATGTCACTGGCACGTTTGCACTACAGTGTGATGATGCTT
GGCTGTATCGAGGCTTGTTTCACCCGTTGTTCTCCCTAATCCCAGCCCCT
GGCTTCCTGGACACAACCAACCGCTTGGCTTGTCGCGACTGGCACACCCA
GGTGTTCAACATGCCAGACGTCATCGTGGCCATGGAGCTGACGGACGAGT
TCAACCAGTTCGGGTTTTTCGCTTCGACGGAGGGCGCGGAGTTCATTAAG
CAGGCCCGAGACGCCAGGAAGCCTTTCCCGAAGCCACGACTAGGCAGAAT
GTGGGCCTTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:338730..344742+

>mRNA_Ecto-sp6_S_contig82.17426.1 ID=mRNA_Ecto-sp6_S_contig82.17426.1|Name=mRNA_Ecto-sp6_S_contig82.17426.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:338730..344742+ (Ectocarpus species6 EcLAC_371)
ATGAGGCCCACCGGAAGAGCGCTCGCCGCCGTGGCCACGGCGGTAGTAGC
AGCAAAGGGAGCTCAGGCCTTCGTGGCGCCAAGTGGCGCCTCCTGTCCTT
CTTCCTTGCGAGCAGGAGCGACCTCTCGACAGCAACAGCAACAACCGTAC
ACGTGCTCGGCTACGAACAACCGACGGTCTCGACGAGCCCCTCCGCCGCC
GTTAGCAGCGGCGGCGGCGGCAGCAGCAAGAGGGGCGGGAGAGGATGACC
ATTGTCCTCCTGCCGATGCCGCACGGGAGGGTAAGGGGCGGTGGGCAGGG
GCCCGCAGGTCTCTCGCGCGCGGGGCAGCCTCCCTTGCGACTTTCACAGT
CGGGGCGACCGCGCTGTCGGGCTTGTCTGCCGATGTGCAGCACAGGCTCA
ACAGCCGCGATGGCGCTGCGGTAGTGGTGTCGATTCCGGCCGCTATGGAG
TTAGCGGAAGCCTCTGTGCTCAGGCCGTTCGAGAAGCGCACCGTGGAGGA
GAAGCTGGCAAACCTCCCGGCCTTCATGGTGACCAACAAGAAGGGCTCGC
CCTACCTTTCGCCCACGGAACCGGGCGAACCGCAGATGGCTGTTTTCTTT
ACGAACGTCGACGATGCGAAGGAGATGCTTATGGAGATGGTGCAGGAATC
GACTTACCAGAACGAAGCACGCATTCTTGTTGTGAGCATGGAGAAGGCCT
ACGGCATGGTGAAGGCGGGTCCGAAGCTGACCGGGTACCAGAATGACGAG
GGGGTGGACGAAAGGATGGACTTTAAGCTAGAGCCGGACATGCACTCGTT
CCAGAAGGCGAGAAGGCTGGGGTTGGACGTCAGCCCCGCCGCCGCGAACA
TCGACGTCCCGGTGTTCTACGCAGAGGGTTTGGAGGTTAAGCGGGATGGA
GGGTTGGTGAAGCCGCTCTTCATGGACCCGGCCGACCTGGTTGAGGCTTG
GAAGAAGGCGGCCGCTTCGAACCCAGATATGCCCGCAGAGCCGACGGTCA
AGGTGTTCAACATGCCAGACGTCATCGTGGCCATGGAGCTGACGGACGAG
TTCAACCAGTTCGGGTTTTTCGCTTCGACGGAGGGCGCGGAGTTCATTAA
GCAGGCCCGAGACGCCAGGAAGCCTTTCCCGAAGCCACGACTAGGCAGAA
TGTGGGCCTTTTAA
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