mRNA_Ecto-sp6_S_contig82.17419.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17419.1
Unique NamemRNA_Ecto-sp6_S_contig82.17419.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:272906..273634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size729
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350453.8216944-UTR-Ecto-sp6_S_contig82:272905..2730241682350453.8216944-UTR-Ecto-sp6_S_contig82:272905..273024Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 272906..273024 +
1682350453.8420303-UTR-Ecto-sp6_S_contig82:273447..2736341682350453.8420303-UTR-Ecto-sp6_S_contig82:273447..273634Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 273448..273634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350453.8323817-CDS-Ecto-sp6_S_contig82:273024..2734471682350453.8323817-CDS-Ecto-sp6_S_contig82:273024..273447Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 273025..273447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17419.1prot_Ecto-sp6_S_contig82.17419.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 273025..273447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17419.1

>prot_Ecto-sp6_S_contig82.17419.1 ID=prot_Ecto-sp6_S_contig82.17419.1|Name=mRNA_Ecto-sp6_S_contig82.17419.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=141bp
MAPPCIEGAVTWRRERHSGHQTRCPQVSPVATLPEKRSSTREEKVFGVYF
APLLYSLAHLIISPLSQLAPVRIPKYDNIESILIYFVTQRAKQAPPPSYG
TTLMIKKYLTTTLAPPNPVLETGVIGYREYKRDKLASLRI*
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mRNA from alignment at Ecto-sp6_S_contig82:272906..273634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17419.1 ID=mRNA_Ecto-sp6_S_contig82.17419.1|Name=mRNA_Ecto-sp6_S_contig82.17419.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=729bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:272906..273634+ (Ectocarpus species6 EcLAC_371)
CCCACTGTCTCTCTCAGTTTTCCATTAGTATCATGGCTCACACGCCCATC
CAGACGCAACGAACGTAATAACGAGCGTAGGAGTAGGAGTGCTGCCGCGC
CACGCCGTTTTCTTCGTGCATGGCACCCCCATGCATCGAGGGGGCGGTGA
CATGGCGTCGAGAACGCCATTCGGGCCACCAAACCCGGTGCCCGCAAGTA
AGCCCGGTCGCGACTCTTCCCGAGAAGCGGTCGTCAACACGTGAAGAAAA
AGTGTTCGGTGTATACTTCGCACCTCTCTTATACTCTCTCGCACACTTAA
TCATCTCTCCCCTCTCGCAACTTGCTCCTGTGCGCATCCCCAAATACGAT
AATATCGAATCAATCTTGATCTACTTTGTTACGCAAAGGGCAAAACAAGC
CCCCCCCCCCAGTTACGGCACCACATTAATGATAAAAAAATATCTCACGA
CGACATTAGCGCCCCCGAATCCCGTATTAGAAACGGGCGTCATAGGATAC
AGAGAATACAAAAGGGACAAATTGGCTTCACTACGGATTTGATCAAAATG
CACACGCGTCAATGTCTCGATATCCGCCATCCCGGCTACACGCCAAGCCC
GGGCCAGGCCGCCTGCGGACATAGCTCTTAGGGAGCACTAGCCCTGAACA
GCGGCACGATCCCTTCTGCTGCTTTGCGGACCGCGAAATATTGCGCAAAA
GAAGGGAGGGGGGGGGCAAAACAAGAAAT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:272906..273634+

>mRNA_Ecto-sp6_S_contig82.17419.1 ID=mRNA_Ecto-sp6_S_contig82.17419.1|Name=mRNA_Ecto-sp6_S_contig82.17419.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:272906..273634+ (Ectocarpus species6 EcLAC_371)
ATGGCACCCCCATGCATCGAGGGGGCGGTGACATGGCGTCGAGAACGCCA
TTCGGGCCACCAAACCCGGTGCCCGCAAGTAAGCCCGGTCGCGACTCTTC
CCGAGAAGCGGTCGTCAACACGTGAAGAAAAAGTGTTCGGTGTATACTTC
GCACCTCTCTTATACTCTCTCGCACACTTAATCATCTCTCCCCTCTCGCA
ACTTGCTCCTGTGCGCATCCCCAAATACGATAATATCGAATCAATCTTGA
TCTACTTTGTTACGCAAAGGGCAAAACAAGCCCCCCCCCCCAGTTACGGC
ACCACATTAATGATAAAAAAATATCTCACGACGACATTAGCGCCCCCGAA
TCCCGTATTAGAAACGGGCGTCATAGGATACAGAGAATACAAAAGGGACA
AATTGGCTTCACTACGGATTTGA
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