mRNA_Ecto-sp6_S_contig82.17417.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17417.1
Unique NamemRNA_Ecto-sp6_S_contig82.17417.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: D8LEK2_ECTSI (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK2_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 4.130e-121
Identity = 193/245 (78.78%), Postives = 206/245 (84.08%), Query Frame = 2 
Query:  452 ATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            ATCCTSDITLA+FRTLCGKMDASDASATTVE +   TA +   L S C G+ + HA     I        P ++  S E PFEGDYTQENYAQQMIDEYKASG+EPAKV AQSFNLADVEY IAAEPE GEQAVFLEDRFDEG+EDP DPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVI PSNYAHEAN AG+DIITWTLERSG+LTDGGG+YYQSV DAILKDAD LTMLDVLAR+VGVI
Sbjct:  151 ATCCTSDITLAEFRTLCGKMDASDASATTVEEYLGGTANFRTDLYSSC-GTLMTHAESIKLIDGLGAKFTPELKSPSVEMPFEGDYTQENYAQQMIDEYKASGIEPAKVWAQSFNLADVEYWIAAEPEFGEQAVFLEDRFDEGVEDPNDPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVIVPSNYAHEANAAGLDIITWTLERSGLLTDGGGYYYQSVADAILKDADMLTMLDVLARDVGVI 394
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BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: D0LU08_HALO1 (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) TaxID=502025 RepID=D0LU08_HALO1)

HSP 1 Score: 257 bits (656), Expect = 3.690e-78
Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 2 
Query:  452 ATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGV 1183
            A CCTSDITLA+F++LCGKMDASD +ATTVE +   TA W   L + C G+ + HA          + + P ++  S E PFEG+YTQE YAQQMIDEYK +GV  + V AQSF + DV Y IA EP  G QAV+L+DR +    D  DP +WS  M +L A+GV+++APP+W LVTLEDG I PS+YA  A  AG+DIITWTLERSG L++ GG YYQSVT+AI  D D + +LDVLA++VGV
Sbjct:  162 AMCCTSDITLAEFKSLCGKMDASDPAATTVEEYLGGTAPWRTDLYATC-GTVLSHAESIKLFQSLEVKMTPELKTPSVEMPFEGEYTQEMYAQQMIDEYKQAGVPASDVFAQSFLIDDVRYWIANEPAFGNQAVYLDDRNERPGFDIDDPASWSPSMEELAAEGVKIIAPPLWFLVTLEDGAIVPSDYAKMAKAAGLDIITWTLERSGPLSERGGWYYQSVTEAIDNDGDMMVLLDVLAKDVGV 404
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BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: C6C1N6_MARSD (Glycerophosphoryl diester phosphodiesterase n=2 Tax=Bacteria TaxID=2 RepID=C6C1N6_MARSD)

HSP 1 Score: 256 bits (655), Expect = 4.390e-78
Identity = 134/253 (52.96%), Postives = 177/253 (69.96%), Query Frame = 2 
Query:  431 RLRGPTHATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKW-SDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            +L  P  A CCTSDITLA+F+ L GKMDAS+  A +V  F   T  W +DR +   +G+ + HA       +  + + P ++  S   PF+GDYTQ+ YAQQMIDEYKA+GVEP  V AQSFNL DV+Y +  +P+ G+QAVFL+DR+D+   D ++P TWS  M DLVA GV ++APP+W+LVT+E+G I PS YA EA  AG+D+I W+ ERSG+L +GGG YYQSV D + KDAD L +L+VLA +VGVI
Sbjct:  148 KLIKPASAKCCTSDITLAEFKQLQGKMDASNPKARSVAEFLDATPSWRTDRYSG--TGTLMTHAESIELFKKLGMKMTPELKEPSVAMPFQGDYTQQQYAQQMIDEYKAAGVEPKNVFAQSFNLEDVKYWLKNDPDFGKQAVFLDDRYDDKGFDYQNPATWSPSMKDLVADGVRIIAPPLWMLVTVENGKIVPSVYAKEAKAAGLDLIAWSFERSGLLKNGGGWYYQSVKDIVTKDADTLVVLNVLAEDVGVI 398
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BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: L0RA75_9DELT (Glycerophosphoryl diester phosphodiesterase n=1 Tax=Maridesulfovibrio hydrothermalis AM13 = DSM 14728 TaxID=1121451 RepID=L0RA75_9DELT)

HSP 1 Score: 250 bits (638), Expect = 1.510e-75
Identity = 129/249 (51.81%), Postives = 177/249 (71.08%), Query Frame = 2 
Query:  443 PTHATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKW-SDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            P  A CCTSDITLA+F+ L GKMDAS+  A TVE F   T  W +DR +   +G+ + HA       +  + + P ++  S   PF+GDYTQ+ +AQQMIDEYKA+GV+P  V AQSFNL DV++ +  +P  G+QAVFL+DR+++   D ++P TWS  M +LVA GV+++APP+W+LVT+++G I PS YA +A +AG+DII W+LERSG+L +GGG YYQSV D I KD D + +L+VLA +VGVI
Sbjct:  152 PASAKCCTSDITLAEFKQLQGKMDASNPRARTVEEFIDATPGWRTDRYSG--TGTLMTHAESIELFKKLGMKMTPELKTPSVSMPFQGDYTQQQFAQQMIDEYKAAGVDPENVFAQSFNLEDVKFWLKNDPAFGKQAVFLDDRYEDKNFDFQNPETWSPSMEELVADGVKIIAPPLWMLVTVDNGKIVPSVYAKKAKEAGLDIIAWSLERSGLLKNGGGWYYQSVKDVITKDGDTMVLLNVLADDVGVI 398
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BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: A0A509E1J8_9HYPH (Putative glycerophosphodiester phosphodiesterase 1 n=1 Tax=Thalassocella blandensis TaxID=2584524 RepID=A0A509E1J8_9HYPH)

HSP 1 Score: 244 bits (622), Expect = 5.670e-73
Identity = 128/249 (51.41%), Postives = 166/249 (66.67%), Query Frame = 2 
Query:  443 PTHATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTL-EDGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            P  A CCTSDITLA+F+TLCGKMDA++ +ATTV  +   TA W     + C G+ + H        +  +   P ++  S   P+EGDYTQ  YAQQMIDEYK + V P KV AQSFNLADV+Y I  EP  G QAVFL+DR+D+   DP+ P TW   MA LVA GVE++APP+WVL+ + E+  I PS YA  A  AG+DIITW+LER G L +GGG Y+QS+T+ +  D D + ++  LA++VGVI
Sbjct:  167 PAQARCCTSDITLAEFKTLCGKMDAANPNATTVAEYLNGTANWRTDWYAQC-GTVLSHKESIELFQQLGVKFTPELKAPSVAMPYEGDYTQAQYAQQMIDEYKQARVSPRKVYAQSFNLADVQYWIENEPRFGRQAVFLDDRYDDPTFDPELPATWQPSMAALVADGVEIIAPPIWVLLKVSENNTIVPSTYAQHARAAGLDIITWSLERDGPLANGGGWYHQSITELMNNDGDTMNVVHALAKDVGVI 414
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BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: A0A443YLL4_9DELT (Glycerophosphodiester phosphodiesterase n=1 Tax=Pseudodesulfovibrio sp. S3 TaxID=2283629 RepID=A0A443YLL4_9DELT)

HSP 1 Score: 243 bits (619), Expect = 9.160e-73
Identity = 128/248 (51.61%), Postives = 171/248 (68.95%), Query Frame = 2 
Query:  443 PTHATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            P  A CCTSD+T+ +F+ L GKMDASD +ATTVE F   T  W   L +  +G+ + HA       +  + + P ++  S + P++GDYTQE YAQQMIDEYKA+GV+ + V AQSF L D+ Y +  EPE G QAVFL++   EG ++ K P TWS  + +L A+GV++VAPP+W LVT+E+G I PS YA +A  AG+ IITW+LERSG+L DGGG YYQS+ D I K  D +T++DVLA+ VGVI
Sbjct:  150 PATAMCCTSDLTVEEFKRLKGKMDASDPAATTVEAFMKGTPAWRTDLYT-ATGTVLTHAESIELFKKLGVKMTPELKTPSVDMPYQGDYTQEKYAQQMIDEYKAAGVDASMVYAQSFKLDDILYWLRNEPEFGRQAVFLDEDGLEGFDNNK-PETWSPTIDELKAEGVKIVAPPLWFLVTVENGKIRPSEYARQAKAAGLGIITWSLERSGLLADGGGWYYQSIKDVIRKPGDMMTLVDVLAQQVGVI 395
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BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: A0A545U658_9GAMM (Glycerophosphodiester phosphodiesterase n=1 Tax=Aliikangiella coralliicola TaxID=2592383 RepID=A0A545U658_9GAMM)

HSP 1 Score: 243 bits (619), Expect = 1.630e-72
Identity = 131/252 (51.98%), Postives = 167/252 (66.27%), Query Frame = 2 
Query:  434 LRGPTHATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLE-DGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            L  P    CC SDITLA+F+TL GKMDA ++ AT VE +   TA W   L +  +G+ + HA          + + P ++  S E P+EGDYTQE YAQQMI+EYK + V+P  V  QSFNL DV+Y I  EP  G+QAV+L+DR+D+   D +DP TWS  M +L A GV++VAPPMW+L+ L  +  I PS YA  A +AG+DIITWTLERSG L  GGG YYQSVT  I  D D L +LDVLA++VGV+
Sbjct:  165 LLSPASVRCCASDITLAEFKTLKGKMDAGNSQATNVEEYMDATAGWRTDLYTQ-NGTLLSHAESIELFKSLGVKMTPELKSPSVEMPYEGDYTQEEYAQQMINEYKLARVKPKNVFPQSFNLDDVKYWIENEPRFGKQAVYLDDRYDDPTFDFRDPATWSPTMEELAADGVQIVAPPMWMLIDLNSNNKIVPSAYAKSAKNAGLDIITWTLERSGPLASGGGWYYQSVTPVINNDGDMLKVLDVLAKDVGVL 415
[Close]
BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: UPI000367C8C5 (hypothetical protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI000367C8C5)

HSP 1 Score: 242 bits (618), Expect = 1.750e-72
Identity = 132/246 (53.66%), Postives = 165/246 (67.07%), Query Frame = 2 
Query:  452 ATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLED-GVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            A CCTSDITLA+F+TL GKMDA + +ATTVE +   TA W   L    +G+ + H           +   P ++  S E P+EGDYTQE YAQQMIDEY+A+G+ P KV AQSFNL D+ Y I   P  G QAV+L+ R+D    +P DP TW+ +M +LV KGV+V+APP WVLV L+  G I  S YA  ANDAG+ IITWTLERSG L  GGG YYQS+TDAI  D D + ++ VLA++VGVI
Sbjct:  161 AMCCTSDITLAEFKTLKGKMDAFNPNATTVEEYMDATADWRTDLYDQ-NGTLLSHVESIELFKSLGVKYTPELKSPSVEMPYEGDYTQEAYAQQMIDEYQAAGIHPKKVWAQSFNLNDILYWIENTPRFGRQAVYLDGRYDNPDFNPNDPETWNPKMRELVEKGVKVIAPPAWVLVKLDQQGKIASSAYAKAANDAGLKIITWTLERSGPLASGGGWYYQSITDAIDNDGDVMNLMHVLAQDVGVI 405
[Close]
BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: A0A1J5MVY0_9DELT (Putative glycerophosphoryl diester phosphodiesterase 1 n=1 Tax=Pseudodesulfovibrio hydrargyri TaxID=2125990 RepID=A0A1J5MVY0_9DELT)

HSP 1 Score: 241 bits (616), Expect = 2.420e-72
Identity = 131/248 (52.82%), Postives = 166/248 (66.94%), Query Frame = 2 
Query:  443 PTHATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLEDGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            P  A CCTSD+T+ +F+ L GKMDAS+ +ATT E F   T  W   L +  +G+ + H        +  + + P ++  S   PF+GDYTQE YAQQM+DEYK +GV P+ V AQSF LADV Y +  +PE GEQAVFL++   +G    K P TWS   A+L A GV +VAPP+WVLVT++DG I PS YA  A DAG+ IITW+LERSG+L DGGG YYQSV D + K  D LT++DVLAR VGVI
Sbjct:  148 PATAMCCTSDLTVDEFKRLKGKMDASNPAATTPEEFLGGTPSWRTDLYT-ATGTVMTHKESIALFKKLGVKMTPELKTPSVPMPFDGDYTQERYAQQMLDEYKEAGVAPSDVFAQSFRLADVLYWLKNDPEFGEQAVFLDEDGLDGFNQDK-PETWSPTPAELKADGVRIVAPPLWVLVTVQDGRIVPSAYARAAQDAGLKIITWSLERSGLLADGGGWYYQSVKDVVRKPGDMLTLVDVLARQVGVI 393
[Close]
BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Match: A0A1S6HUW0_9GAMM (Glycerophosphoryl diester phosphodiesterase family n=5 Tax=Shewanella TaxID=22 RepID=A0A1S6HUW0_9GAMM)

HSP 1 Score: 241 bits (614), Expect = 6.000e-72
Identity = 121/246 (49.19%), Postives = 178/246 (72.36%), Query Frame = 2 
Query:  452 ATCCTSDITLAQFRTLCGKMDASDASATTVEYFAPETAKWSDRLTSPCSGSRVLHAAETNGILRQTLLLRPRVRPSSFEQPFEGDYTQENYAQQMIDEYKASGVEPAKVLAQSFNLADVEYCIAAEPELGEQAVFLEDRFDEGMEDPKDPTTWSVQMADLVAKGVEVVAPPMWVLVTLE-DGVIEPSNYAHEANDAGVDIITWTLERSGVLTDGGGHYYQSVTDAILKDADKLTMLDVLARNVGVI 1186
            A CCTSDITLA+F+TL GKMD ++ +AT+VE +   TA W   L S  +G+ + H        +  + + P ++ +  + PF+G ++Q++YAQ+M+DEY A+G++PA+V  QSF+L D++Y IA+ PE   QAVFL+DR+D+   DP+  T+W+  M DL A+GVE++APP+WVLVTL+ +G + PS YA+ ANDAG+ II W+LERSG+L DGGG YYQS++DAI  + D   +LDVLA+++GV+
Sbjct:  158 AQCCTSDITLAEFKTLRGKMDGANPNATSVEEYMAGTANWRTDLYSG-NGTLMTHLESIEMFDKAGIKMTPELKEAMVQMPFDG-FSQQDYAQKMLDEYTAAGIDPARVYPQSFHLEDIQYWIASAPEFASQAVFLDDRYDDAGFDPQSETSWAPSMPDLKAQGVEIIAPPLWVLVTLDNEGKLIPSEYANAANDAGLKIIAWSLERSGLLADGGGWYYQSISDAIDNEGDVFELLDVLAKDIGVM 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK2_ECTSI4.130e-12178.78Glycerophosphoryl diester phosphodiesterase n=1 Ta... [more]
D0LU08_HALO13.690e-7855.74Glycerophosphoryl diester phosphodiesterase n=1 Ta... [more]
C6C1N6_MARSD4.390e-7852.96Glycerophosphoryl diester phosphodiesterase n=2 Ta... [more]
L0RA75_9DELT1.510e-7551.81Glycerophosphoryl diester phosphodiesterase n=1 Ta... [more]
A0A509E1J8_9HYPH5.670e-7351.41Putative glycerophosphodiester phosphodiesterase 1... [more]
A0A443YLL4_9DELT9.160e-7351.61Glycerophosphodiester phosphodiesterase n=1 Tax=Ps... [more]
A0A545U658_9GAMM1.630e-7251.98Glycerophosphodiester phosphodiesterase n=1 Tax=Al... [more]
UPI000367C8C51.750e-7253.66hypothetical protein n=1 Tax=Hahella ganghwensis T... [more]
A0A1J5MVY0_9DELT2.420e-7252.82Putative glycerophosphoryl diester phosphodiestera... [more]
A0A1S6HUW0_9GAMM6.000e-7249.19Glycerophosphoryl diester phosphodiesterase family... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:221985..230120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score267.3
Seed ortholog evalue5.3e-69
Seed eggNOG ortholog2880.D8LEK2
Model size1242
KEGG rclassRC00017,RC00425
KEGG koko:K01126
KEGG ReactionR01030,R01470
KEGG Pathwayko00564,map00564
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.Glycerophosphoryl diester phosphodiesterase family
EggNOG OGs2CNH4@1,2QW99@2759
Ec32 ortholog descriptionglycerophosphoryl diester phosphodiesterase
Ec32 orthologEc-23_002720.1
EC3.1.4.46
Cds size558
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17417.1prot_Ecto-sp6_S_contig82.17417.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 224889..230120 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.0092509-UTR-Ecto-sp6_S_contig82:221984..2221181682350455.0092509-UTR-Ecto-sp6_S_contig82:221984..222118Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 221985..222118 -
1682350455.019473-UTR-Ecto-sp6_S_contig82:222405..2228811682350455.019473-UTR-Ecto-sp6_S_contig82:222405..222881Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 222406..222881 -
1682350455.0277774-UTR-Ecto-sp6_S_contig82:224814..2248881682350455.0277774-UTR-Ecto-sp6_S_contig82:224814..224888Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig82 224815..224888 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350455.035614-CDS-Ecto-sp6_S_contig82:224888..2248961682350455.035614-CDS-Ecto-sp6_S_contig82:224888..224896Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 224889..224896 -
1682350455.0435355-CDS-Ecto-sp6_S_contig82:226125..2262941682350455.0435355-CDS-Ecto-sp6_S_contig82:226125..226294Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 226126..226294 -
1682350455.051424-CDS-Ecto-sp6_S_contig82:228053..2281041682350455.051424-CDS-Ecto-sp6_S_contig82:228053..228104Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 228054..228104 -
1682350455.0593836-CDS-Ecto-sp6_S_contig82:229790..2301201682350455.0593836-CDS-Ecto-sp6_S_contig82:229790..230120Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 229791..230120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17417.1

>prot_Ecto-sp6_S_contig82.17417.1 ID=prot_Ecto-sp6_S_contig82.17417.1|Name=mRNA_Ecto-sp6_S_contig82.17417.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=186bp
MAAARLILFISLLALAAPAAAGYSKGRHRWRNDAEVGYRPEFLVSRMDDS
DLKTELEACDVDMTQHKFFIGHRGACLQYPEHTKESYEAAAKQGAGIIEC
DVSFCATYLLLVCRHAQCDLHTTTNILTTDLAAKCTSPFVPADAAAGTDA
RHVLHQRHYPRPVPHPLWKDGRLRRLRHHGRVLRS*
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mRNA from alignment at Ecto-sp6_S_contig82:221985..230120-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17417.1 ID=mRNA_Ecto-sp6_S_contig82.17417.1|Name=mRNA_Ecto-sp6_S_contig82.17417.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8136bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:221985..230120- (Ectocarpus species6 EcLAC_371)
ATGGCTGCCGCTCGCTTGATCCTGTTTATATCCCTGTTAGCCCTCGCGGC
CCCGGCCGCCGCCGGCTACAGCAAGGGGCGGCACAGATGGAGAAATGATG
CCGAAGTTGGTTATCGGCCGGAGTTCTTGGTTTCCCGCATGGACGACAGC
GATCTCAAGACCGAGTTGGAGGCGTGCGACGTCGACATGACCCAGCACAA
GTTCTTCATCGGCCACCGCGGGGCGTGCCTGCAGTACCCCGAGCACACGA
AGGAGTCGTACGAGGCCGCGGCAAAGCAGGGCGCGGGCATCATCGAGTGC
GACGTGAGTTTTTGCGCGACATATCTGCTGGTGTGATTCAGGATGCTGTG
TTCACTATCCAGGGTCAAATTGAGGAGCTTGATGAGAAACGAAAGGCAAC
AAAGATATGAAAAACAGAAAGGAGAGGTACGCTAACATGCAGTCAGATAC
ACAAGATGGCCACCCAACTACCTTGAGCCTGTTACCCACAAGGGAGATGT
CGCTGTGTGCTGATCGGGAAACGGTAGTCTTCGCTGACGCTATAATATGA
TTTCATCGCTATCTTACGTACATGTACACTATTTTCTATGTAAGAGATGG
ATCTGTTGTGCCATACTAAGAAAAAAAAAAAGGTGCGCGGAAACACGATC
AGTCGGATTCCACGAACAAGATAGACTGTTTAAACAGACCCGGTTTCTAA
TGTGAAGACAACAACAACAACAACAAAAACAAGAACAACCTCAACAACAA
TAAACAAAAAAGCAATATAGGACGGCCACAAATTCAGATTCAAGCCCAGC
TGGGAAACACTCCACATGGATGGCCGCTCGTGAGAATAGCGTCAAAAGTG
CTAACACCAAGCGATCAGCTCGTCCTCTCACCCTGAAGAGCCCAGACTAC
AGCAGTGCACTCTAGGATACCCTCGTCTACAAGCTAAGGTCATCGAGAAA
ATATGAAACTGGGTTCGAACTCCTGTCCTTCGTAAAGACAATCGTTCATC
ATGCACCCTATATACAAACTACCAAACGTGACGGGATTATATGGCGGTGT
GGCGACATGGCTGTACTGTAGTATGGCGGTACTTTTTCGGCGGTACGGCG
ATATTTCGATACTTTTTTGGAGGTTTCCGGTACGTTCTTTGGTGGTACTT
TGTGGGCAGTCACGCACTATGACGACGGTACGTTTTCGGCGGGAGGTGGT
ATTTCGTTTTTCGGCGCGTTCGCCGGTTCCTTGTACCACTGAAAGGTGGG
GTTGAAATGACCGCCGGTACCGGGGCCATCCATAACGGCAGGAACTTTCC
GGAGGTGTACTCTGAAAATTCGCCCAGTCGTGACTCCGAGCGTTCAGTTG
ATGGTACGACGGTGATGTGTGTTTGGGAGGGTGTTTTCGTTTGGGTTGTG
TGTGTTTGTTGGTAACTTCGTGCATCAGATCTACCCCATGATATCAGCCC
CACTCTAATGCAGACGGCCGGAAATGGTGGCGGGGGCCCCGGGCAAGGCA
GTTAGGGGCCCCGTGCATATGTCGTCCCCTTACCGTCCCTTCAGTCCCCG
ATCGGATTTCCAAGTACAACGCTCCCTCCATCTATCTCTCTCTTCAAGTG
ACATTTGATGGGCAGCGAAACGCCCAGTACATTGTAGGGTTTTGGGGTGA
CTTTTCTTTTCGCTTGTGGGTTGGTTGAGATTGCAACTGGTTTGGCGGAA
AAAGAACAAGCACGAGGGAGAGAGACAGAGACAGGGACACAGGAGGACCG
AAAGTAGCAGAGGAATATTGAGAGTATGTGTCGATATTCTTCGGGCTGAA
AAATTGAAACACAATAATTTCCCAGTCTTGAAAGGGTTAGATGTTGACGT
TTACTTGAAAGTGCACATGGTACGCAACAACTCTCTGAACGTCGCATAGA
CGCTGCATAAAAGCTGCTGCTGATGATTATGATGATGATTCTTATGCTGA
TGCTGCTGTCCACTCCTCTCTTTTCAATCGATGTCCCCGTAGCACAAGTC
ACCTTCACCAAGGGAGCTCGTGTGTCGCCACGCCCAGTGCGATCTTCACA
CCACCACCAACATCTTGGTGGGTGAGGCCGGAAAACACAAATATGCTGGA
GAGTTTGCGATAGTCAAAAATTCGTCAAATAAATCGTCGAAAGTAGGGGG
AATAGAAACCGACGGCAAAAAAATATTTGATTCCCAAATTTTTCCACATG
TGGGTTGCTTGGTTGGTAAGATTGGCATCAATATTTAATAGTGTCCAGCC
ACTGTTGGTCATACCTCCGTCTCGCTGTGGTTGATCAAGGCGTTCCGACA
GTACTCCAGTTGGTCGAAAACACATCAATTCAACCCTTCCCGAGAGAGCA
ATCATACACACACAGCAGGTCGGCACGTTCAATTTATTTGGTGAAGGCCC
CCGCACACCCCGCAGATAGATTCAGTTGATAGGCGAGAGGAGAGCGCGCT
ATTTTGTGAGGAGGCCCAGGTCGATCACAAGCATACCCCAATACGAAGCA
GCAGTGGCTGTGCCGGGGGCGCGGAAAAAAGAAGGAACGGATGAATGCGG
CTCTGGGGTCAGGATGATGCCTAATCTACGCACTTTGCCATTAATGTCCG
CGCCACAATGCATCCGAAGAAGACAACAACCAGTCAGCCGTCCTGCTAGC
CCATGTTGTTGATGATGGGCGGATCGTAACGAACTGTTGTCAACATCCCT
GTGTGCAGCGAGAAAAGGATTTACGCCACGACCGCAACAGCAAAACATGA
AAGGAGAACACGAACAACTTGCATTACAACCATATTTGAATCCTCGTCAT
CGCACGGCAGAATCGCTTCACATCTATAAAATGGGATCGACTTGCCAAGA
TTTCACCACTTATTAACAAAGGCAAGCACTAGATGCGGCTGTTTTATAAA
GCATTACATCCTGCGATACTTTTCCGGATGATGAAACTGGTTGCCGTCGC
GACCATCTTACCTGTTTGTTGGAGGAAGAGACGTGCTCACCCCGTTGGCG
AGTGAAGGCAGTTGTCGGAACGTTCTCGGTACGCGAAGGAGTTTCAGCCT
TCTCAGAGGCACCTCGGTTTTTCTCGAAGTTCCTTTGAATGTTATTCACG
AATCGGTGGGGGGGAAGCGATCGACAATAGCGGGCCAACCTGGTCTGCTG
TTTGCAGGGTTGCGGACTTCCGGGTAGGGGGCTTTGAGTGTGCCGTAAAA
CTCCCACATACGTATTGGGTAGGGCTTTGGTAGGGTTACAAAGCTAGAAT
GTGAAGTCGCACGTGCGTATCTCACCGGCATTCTTCGGGTTCTGTCTTAA
ACGTTTATTGTGCCCCTGGGTATTGGGCATGCCAAGTGTCAGAAGGAAGG
TTCGGGTTCAGAAGTTTTAAGTGGTGGGGTGTAAACTGCCCATGCATTCA
GAACTCGGTGCATACCGGGACAATAGGGCGTTGAATGTGTTGCAGAACCC
TTTCGTGTTCAGGCACAGGAGGGCGCCCCGAAAAAATACTCCCGGTTGCG
GCTGGAGGCACCATTGAAACGTATTCGTCATCGTCTGTGCGAAGCGATTC
ATGGTGAAGCACAACTTACGCGTCAAAGCCTCGCCCCAACCATCTCAACG
ATGTTTTTATCGGCGGAATCGGCGCAACAATGTCTCCTAATCTCACCTGC
ACGATGTAATGGTGGCATGCACAGCACCAGCAGCTGTCTCTCACGATATG
CGTACGGAATGAACATACCCCTCCCCAACCCCCCCTACACATCCCTCCTA
AGCAAGATTGAATCACGGCGCTTTTCCTCCTTCCTCCCGCACAAACATCT
GTCCAACCCCGAACCTTCTCGTCCAGACCACGGACCTCGCCGCCAAGTGC
ACCTCCCCGTTCGTGCCCGCCGACGCGGCTGCGGGGACCGACGCACGCCA
CGTGCTGCACCAGCGACATTACCCTCGCCCAGTTCCGCACCCTTTGTGGA
AAGATGGACGCCTCAGACGCCTCCGCCACCACGGTCGAGTACTTCGTGTG
CAAGTACTATCGTCAGTAAAATACTGAAGTATACCGCATTTCTACTACTT
GATCATGGAATAGATATCGGAAAGGTAAATTTCAACTCGATGGATCTTCA
ACACTAGCAGTCAGTATGCCCATTTCATACATGAAATCAACCGTTTGTTG
TTTATGTGGTTTGTCATGCAGACCATTTGCTTGTCACAAGAAAGCGTAAA
CTATGAACAAAGAATGCTTGCAGCAAACTCTGCAAGGTCAAAGCGAAAAA
TTCAAAACAGTCAGCTTGTTAACTCGCTGCTGCTGCAGTTGCTACGTGCC
CATGCGTATACATGCCGCAGTCTGAAAAATTCAAGACAAACAAACACCTC
GTATGTCTATACAGCCAGGAGTCGACGAGAACTCCAAAGTAGCTGCGATC
CAGGGCCAGTAACATTCGCAACCCCACTAAACTAATTGTTTTTAGCTCCT
CCTCATCAGGCTGGTCCTCCCCGCCGTCGCTGTCGACGAAGGCCAATCGG
CGCCGTTTCTTGCCCTTGCCTGAGAAGCGGCGAAATCAGGGTCATGGCAA
AACCGATGCGTAGAGGAAAAAATAGGATTTTGAAGCTGATGTACCGGGAA
AACTCACATGAACGGTGTCTTATCAGCACAGATGACGCCCGAACCTAAAG
AACCGCCTATTTTGCCGAGGCTCGATGCCTATTGGCTGCCTCAAATTGAG
CACCTGTTCTTATTTTCAATGCCGTATGATAAACAGGGTTCTTGTTCTTA
TTTCTACTCCGAGGGCCCCATTCAGAGGACACCAGGTTCTTGTTTCCTGA
GTGGATTCAACCTGACAATTGAGAGAAGGGTGTTCACAAAACAAAGTTAC
AATAGAACGTCGCTCAACAAAGACCTCTTGACCCGACGTACGGAGCTTCC
GTGATCACGATAGGGTAGAAATACAGACGCGGCATCGCCTAAATACTGAA
ACATCTGAGCAAACATTGAACCATTTAGAGGTTCACAAGGGTCACATTCG
GCGTGATCGTCCTCCCCGCTCTACGAACGCCCGTCATAGCTACACTGCGA
CATCACCCTGTTGTTCGATGGCCGGACCTCCTCCCTGCTCTACGGCGCTC
TCCTCAAGCAAGCCCACGGCCCTACCACCGCACCCACCCGCATCTCCACT
GTACTCGTCAAAAGGCAATTTCATTCGGGGCTCGAAATGCACACGGTAGT
GGTAGTCGTAAAGGTGGCGGGTAGGCTCCTGAGACTGCCAAATGGTCAGA
TCGCCTAACCAGCCCATGCTCAGGTTCACGAGTACTCCACGCTGCAGAAA
CGAACGGTCAAGAGCAGCGAGTTTAGACGCTTGACTTCGACAACCGGTGG
GTGCAACGAAGGAAGAGGCGTCGGTAAGCATTCGTCGCCCCCACATCGAC
TCGATAGCCTCCCAATCTAACTTCGTGGGCAGTTACCAGCAAAAACCGTT
ATTTGATGGCCTCGAAGAAAGTGTCGGTCAAGAATGACACCCATTCTTTT
CAACTTAGACAGTCGCCCGAGCCCCTTCAATATTTTGAAGGGGTACGGAC
GTGGCTCTCGTGCATGGCACGCAGCGTGGCAGGCACCCCAGTGTCACGAG
ACAGGGATATCCTTGTTCAACAAAGCTAACCACCATCCCCACCCCCCCTT
CCCCCTCGGCACTGACCAAGGTAATATGTGAAGGCGGCTCCGAGTACAAA
GACCGGGTTTATGTGTACTGTAGTTGCGGAGTGTCTGTTGTACAAGGAGA
GGAAATTGTACATAACTAAGCGGGGAAAAGTAGAAGGAAAATACAGGGAG
ATGTTTGAGGCATGGAATAGCCGGGAGAAGACGGTAGCTGTACTGCGGCA
TAGAGAGTGGGTTGAAGAGGCGGGAAGTGATGTCGATAGGAGAGATACGC
TAGGGAAAACATGTTTTAGACACTTTTAGCAAAGTGGTAAGAAGGAACTA
TTGGCCATCGGTCTTCGGTCCTGTTGGAACAGTTCTCCGTCCTCTCGAGG
ACGCGTGGTCAATGATGTAGCCGCTAAGGTATGCAAAACAAAAGAGCGCC
CCCCTCCCCCCCCCTCCGCACCAGTGATACTTGAAACGGAGTTCCCCTCC
TCGCAGCTGATCTGAAACCGCCGGTGGGTGGGATCACCGTGCCCCCCATG
AGCAACCCCTCACCACCTTCATGGGTTCTTATGAAGCTGCCGCGCTTTTT
GGGGTCTGTTTTTACCTGAATGCGCAATGTACACCACACACCACAATTGC
GGGTTCTTGTACTTTATTCCACGCCGGAACTGAGCGCGTGTTCTTATGGC
CAAGTTCTTATTTTTTTTATTTTTTTCCGGGGCTTCATTTCTCAACTGCT
ACGTCCTTAAGTGCGAACGCCACCTGTATGAGCCAAACTTGTCGACGTTG
ATCTGTGTTCGATTCTTGATATAGTTTGGATCTACAGGCTTGTCACGTAC
AACCGCAATGCGCGTTGCTATGATTTTACGGAGCCCCTCGCGAAGATCGG
AATTGAAGCGTGATTCAGCTGCGAGCATTCCCGCATTTCGGCTATGATTC
AGCGGTTGAGTCAAGAAAGTCCAGACGTTATTCTAAATCACTTATGTCAT
GTCCCCTTCGCATGCTAGTGAACGTAGTGAGTACATCAATGAGAGTACAG
TTGGGAAAGAGTGTCGTCACCAAACTTCAGGTGCTGCACAAATTCGTGCG
CGGCGTAAAAATCGATTTGCTTCGACTTGGGAACAAAAAACAATACGATA
CAACTAAAACACCCCCAGGTCTGCTCTGTTACATCGCGCGAATACAAACA
AGCTCTCACCCAGGGCTAGGTGAGCTCCCAATCTGAATCGCTGGCAGTTG
CAGATGACGATTCATCACTCGAAGACGTGATCATGTTCGTCACCTCCACC
CTCTCTGAGTTGTCCTGGCTCGCGAGCAGACCTGGGGGTGTTTTAGCCTT
GTCGTGTTTTTGGCTCCAAGTCGAAGCAAATCGATTTATTGCGCGGCCAT
ACCAAAACCTCCTCCGCATCAAGCATCTGTCTATGTCGGAGTCTTCGAGA
ACGTCACACCCCACAGCAGCAACCACATCAGCTGGCACTAAACATCCTCG
CCGAAAAACTGCGAAACGAACGTTTCTTCGCCTTTCCCATTCTTCAGCAT
TTGCAATGTCTATCGAAGTCGTTGTCTCTCAAGGCCTTTCGTCCCCGCCC
TACCTTGTTCTGTCCACACTTCCGTTCAACGAATTCTAGGTATCCTTCGT
CAAACGTTGTTGTTGCGTCCCCGCGTGCGTCCCTCTTCGTTTGAGCAGCC
CTTTGAGGGGGACTACACCCAAGAGAACTACGCCCAGCAGATGATCGACG
AGTACAAGGCGAGCGGCGTCGAGCCGGCCAAGGTTTTGGCGCAGAGCTTC
AACCTCGCGGACGTGGAGTACTGCATCGCGGCGGAGCCCGAACTCGGGGA
GCAGGCGGTCTTCCTCGAGGATCGGTTCGACGAGGGTATGGAGGATCCCA
AGGACCCCACGACGTGGTCCGTGCAGATGGCCGACCTGGTTGCCAAGGGT
GTGGAGGTGGTCGCTCCCCCGATGTGGGTCCTGGTGACCCTGGAGGACGG
AGTGATCGAGCCTTCGAACTACGCCCACGAGGCCAACGACGCCGGCGTTG
ACATCATCACGTGGACGCTCGAGCGCTCAGGTGTCCTGACGGACGGCGGC
GGTCACTACTACCAGGTTCGCAGGGATGTGTCATACGAGTGCAGGTTTGC
ATCATCCTCCGGAATATGTGCTTGTTCAGCAGCTTTTGTTGTCGTTGTTG
TTGGTGGTGATTGTTGTAGTTGTGGGGATGATCTTCTGTTCCTATTGTGC
TACTCATCCAGCCGCCATCTGAGAAATATAAAGGTGTCGGCATCGCGAAC
GAGTTTTTTTCGCGATAAAAAGATCTTGCCGACACTCACTCTCCGCTCCA
TCGGCGCTTTGGTTTTGTTTCGTGTCCTGCTTTCTTTCGCTGCTGCCTCC
AGTCCGTAACCGACGCCATCTTGAAGGACGCGGACAAGCTGACAATGTTG
GACGTGCTCGCCCGCAACGTCGGTGTGATCGCGACTGGCCAGCCACCGTC
ACCCGCTACGCCAACTGCGTCCTTGACTTCCTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:221985..230120-

>mRNA_Ecto-sp6_S_contig82.17417.1 ID=mRNA_Ecto-sp6_S_contig82.17417.1|Name=mRNA_Ecto-sp6_S_contig82.17417.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:221985..230120- (Ectocarpus species6 EcLAC_371)
ATGGCTGCCGCTCGCTTGATCCTGTTTATATCCCTGTTAGCCCTCGCGGC
CCCGGCCGCCGCCGGCTACAGCAAGGGGCGGCACAGATGGAGAAATGATG
CCGAAGTTGGTTATCGGCCGGAGTTCTTGGTTTCCCGCATGGACGACAGC
GATCTCAAGACCGAGTTGGAGGCGTGCGACGTCGACATGACCCAGCACAA
GTTCTTCATCGGCCACCGCGGGGCGTGCCTGCAGTACCCCGAGCACACGA
AGGAGTCGTACGAGGCCGCGGCAAAGCAGGGCGCGGGCATCATCGAGTGC
GACGTGAGTTTTTGCGCGACATATCTGCTGCTCGTGTGTCGCCACGCCCA
GTGCGATCTTCACACCACCACCAACATCTTGACCACGGACCTCGCCGCCA
AGTGCACCTCCCCGTTCGTGCCCGCCGACGCGGCTGCGGGGACCGACGCA
CGCCACGTGCTGCACCAGCGACATTACCCTCGCCCAGTTCCGCACCCTTT
GTGGAAAGATGGACGCCTCAGACGCCTCCGCCACCACGGTCGAGTACTTC
GCTCCTGA
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