mRNA_Ecto-sp6_S_contig82.17412.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig82.17412.1
Unique NamemRNA_Ecto-sp6_S_contig82.17412.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig82.17412.1 vs. uniprot
Match: D8LEK5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK5_ECTSI)

HSP 1 Score: 622 bits (1603), Expect = 1.320e-221
Identity = 368/390 (94.36%), Postives = 369/390 (94.62%), Query Frame = 1 
Query:  166 EDNYADSRNGTTRPGELLVADGSMLSPPAVLDMCALYGRSNPSLVVGLLRSLGELDGGAAGVSSLAEGLEKAVLAAAGALAEVHAKMAGAQDGLGLGPPIDHTEASDILSYVTDVAVSVGSLLQASSGVRAVGSGXXXXXXXXXXXXXXXXXXXXXXXIGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALEGFLLAPTSSGKVGAPDYESVRARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSGDGDGAGDAGVADGLFSFVTSVTAASGHLAPTGYAGSLLGEYNRRFRLADALDQAQALGTQPIPPHXXXXXSEKQRTPRVGLAPGLVLGPERTEYLTGVLRALPVSEEGVSKEAEXXXXXXXXXXX-RAMSAALDMG 1332
            EDNYADSRN  TRP ELLVADGSMLSPPAVLDMCALYGRSNPSLVVGLLRSLGELDGGAAGVSSLAEGLEKAVLAAAGALAEVHAKMAGAQDGLGLGPPIDHTEASD+LSYVTDVAVSVGSLLQASSGVRAVGS  XXXXXXXXX             IGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALEGFLLAPTSSGKVGAPD ESVRARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSGDGDGAGDAGVADGLFSFVTSVTAASGHLAPTGYAGSLLGEYNRRFRLADALDQAQALGTQPIPPHXXXXXSEKQRTPRVGLAPGLVLGPERTEYLTGVLRALPVSEEGVSKEA XXXXXXXXXXX RAMSAALDMG
Sbjct:    5 EDNYADSRNSATRPAELLVADGSMLSPPAVLDMCALYGRSNPSLVVGLLRSLGELDGGAAGVSSLAEGLEKAVLAAAGALAEVHAKMAGAQDGLGLGPPIDHTEASDVLSYVTDVAVSVGSLLQASSGVRAVGSSGXXXXXXXXXG------------IGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALEGFLLAPTSSGKVGAPDSESVRARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSGDGDGAGDAGVADGLFSFVTSVTAASGHLAPTGYAGSLLGEYNRRFRLADALDQAQALGTQPIPPHXXXXXSEKQRTPRVGLAPGLVLGPERTEYLTGVLRALPVSEEGVSKEAXXXXXXXXXXXXXRAMSAALDMG 382
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BLAST of mRNA_Ecto-sp6_S_contig82.17412.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 495 bits (1275), Expect = 4.620e-168
Identity = 277/318 (87.11%), Postives = 280/318 (88.05%), Query Frame = 1 
Query:  316 SLGELDGGAAGVSSLAEGLEKAVLAAAGALAEVHAKMAGAQDGLGLGPPIDHTEASDILSYVTDVAVSVGSLLQASSGVRAVGSGXXXXXXXXXXXXXXXXXXXXXXXIGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALEGFLLAPTSSGKVGAPDYESVRARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSGDGDGAGDAGVADGLFSFVTSVTAASGHLAPTGYAGSLLGEYNRRFRLADALDQAQALGTQPIPPHXXXXXSEKQRTPRVGLAPGLVLGPERTEYLTGVLRALPVSEEGVSKEAE 1269
            SLGELDGGAAGVSSLAEGLEKAV AAAGALAEVHAKMAGAQDGLGLGPPIDHTEASD+LSYVTDVAVSVGSLLQAS GVRAVGSG                       IGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALE FLLAPTSSGKVGAPD ESVRARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGS DGDGAG AGVADGLFSFVTSVTAASGHLAPTGYAG+LLGEYNR F LADALDQAQALGTQPIPP      SEKQRTPRVGL+PG VLGPERTEYLTGVLRALPVSEEGVSKEAE
Sbjct:    2 SLGELDGGAAGVSSLAEGLEKAVFAAAGALAEVHAKMAGAQDGLGLGPPIDHTEASDVLSYVTDVAVSVGSLLQASCGVRAVGSGAGGG-------------------IGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALESFLLAPTSSGKVGAPDSESVRARGRVARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSWDGDGAGHAGVADGLFSFVTSVTAASGHLAPTGYAGALLGEYNRCFHLADALDQAQALGTQPIPPQSP---SEKQRTPRVGLSPGAVLGPERTEYLTGVLRALPVSEEGVSKEAE 297
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BLAST of mRNA_Ecto-sp6_S_contig82.17412.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.090e-7
Identity = 112/417 (26.86%), Postives = 153/417 (36.69%), Query Frame = 1 
Query:   91 LQELGRRVFLVLLRAVGPEHASLAKEDNYADSRNGTTRPGELLVADGSMLSPPAVLDMCALYGRSNPSLVVGLLRSLG----ELDGGAAG--------------------VSSLAEGLEKAVLAAA-------------------------------------GALAEVHAKMAGAQ---------------DGLGLGPPIDHTEASDILSYVTDVAVSVGSLLQASSGVRAVGSGXXXXXXXXXXXXXXXXXXXXXXXIGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALEGFLLAPTSSGKVGAPDYESVRARGR----VARQWLLRCLHGLIGPVFLQPLGLQEASPSVAGSGDGDGAGDAGVADGLFSFVTSVTAASGHLAPTGYAGSLLGEYNRRFRLADALDQAQALG 1101
            L +L RRV  +LLR VGPE A+L ++ +           G  L   G +LS PA+LD+CA+YG +N +L+ GL  +L     EL   AA                     V+      E+ + AAA                                      A AEVHA+ +                               A+D+  YV DVA ++  L +    + A                              L  +L+G       EGL AALALT+EATLPALE   LA TS             ARGR    VAR+ LL+ +  L+  + L P+   E    VA +           ++GL +F          +A  G  G+LLG Y   F LA  L  A A+G
Sbjct:  296 LVQLTRRVLALLLRLVGPEVAALEQQLHVTPGAPAARAYGGALTQSG-LLSVPALLDVCAIYGVANANLLRGLFAALAALRPELPAEAAAXXXXXXXXXXXXXXXXXXXVVADANLSSERKLPAAAVXXXXXXXXXXXXAEALRARARPRRAGCAGPAAPRRAAAAAEVHAQCSALSAPXXXXXXXXXXXXXXXXXXXXXXXXDTAADLAMYVVDVAATLLQLARCGGALAARA----------------------------LQAKLEG-------EGLCAALALTYEATLPALER-ALAVTSV----TXXXXXXAARGRRACLVARRQLLQLVGELVETLNLAPMDSVEVDVEVAEA----------ASEGLLAFALXXXXXXXXVAEGGRVGALLGGYASFFGLAKRLRAAAAVG 661
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig82.17412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEK5_ECTSI1.320e-22194.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6J2_9PHAE4.620e-16887.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBT6_9STRA1.090e-726.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig82contigEcto-sp6_S_contig82:128259..131514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1332
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002690.1
Cds size1332
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350454.609842-CDS-Ecto-sp6_S_contig82:128258..1286291682350454.609842-CDS-Ecto-sp6_S_contig82:128258..128629Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 128259..128629 -
1682350454.6186733-CDS-Ecto-sp6_S_contig82:129008..1291891682350454.6186733-CDS-Ecto-sp6_S_contig82:129008..129189Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 129009..129189 -
1682350454.6268358-CDS-Ecto-sp6_S_contig82:129541..1298981682350454.6268358-CDS-Ecto-sp6_S_contig82:129541..129898Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 129542..129898 -
1682350454.6347952-CDS-Ecto-sp6_S_contig82:130168..1304261682350454.6347952-CDS-Ecto-sp6_S_contig82:130168..130426Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 130169..130426 -
1682350454.6427038-CDS-Ecto-sp6_S_contig82:131349..1315141682350454.6427038-CDS-Ecto-sp6_S_contig82:131349..131514Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig82 131350..131514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig82.17412.1prot_Ecto-sp6_S_contig82.17412.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig82 128259..131514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig82.17412.1

>prot_Ecto-sp6_S_contig82.17412.1 ID=prot_Ecto-sp6_S_contig82.17412.1|Name=mRNA_Ecto-sp6_S_contig82.17412.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=444bp
RFRRRHYESTAVGQQQQQEQQQQPSEEPAPLQELGRRVFLVLLRAVGPEH
ASLAKEDNYADSRNGTTRPGELLVADGSMLSPPAVLDMCALYGRSNPSLV
VGLLRSLGELDGGAAGVSSLAEGLEKAVLAAAGALAEVHAKMAGAQDGLG
LGPPIDHTEASDILSYVTDVAVSVGSLLQASSGVRAVGSGGGGGGGGGGG
GGGSGGGGGSGGGIGLLAQRLQGSDGEVSPEGLAAALALTFEATLPALEG
FLLAPTSSGKVGAPDYESVRARGRVARQWLLRCLHGLIGPVFLQPLGLQE
ASPSVAGSGDGDGAGDAGVADGLFSFVTSVTAASGHLAPTGYAGSLLGEY
NRRFRLADALDQAQALGTQPIPPHPPHPPSEKQRTPRVGLAPGLVLGPER
TEYLTGVLRALPVSEEGVSKEAEAAAAAAAAAGARAMSAALDMG
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mRNA from alignment at Ecto-sp6_S_contig82:128259..131514-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig82.17412.1 ID=mRNA_Ecto-sp6_S_contig82.17412.1|Name=mRNA_Ecto-sp6_S_contig82.17412.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3256bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:128259..131514- (Ectocarpus species6 EcLAC_371)
AGGTTTCGTAGGCGACATTACGAATCTACTGCTGTAGGGCAGCAGCAGCA
GCAGGAGCAGCAGCAGCAGCCGTCGGAAGAACCCGCCCCCCTGCAAGAAC
TCGGGAGGCGTGTTTTTCTGGTGCTGCTGCGAGCGGTTGGGCCGGAACAC
GCATCGCTGGCCAAGGTATTCTATAAGAATCAAACTCCACCACGAACCAA
CGACTGCCGTCGCCTTGGCACGGTTTTTCGATCAAGTTGCACATGTTGGA
TAAAATCGTACAATCGGGTAAGTATTTTCGATCAAGTTATACATGTTGGA
TAAAGCATACAATCGGGCAAGTTGGGTTATAGGGTTAGGGGTAGCGAAAT
AAGGTCTGCGTACCCCCTCCCGGTTTAACCACCGGCGGTTTGGTCGAGCA
TGCCGCAGAACCAACCCACCGCACACCCTGGACCCCAATACGGGCAGGCA
GTTCATGCTTGCACCACGTAGCGGTACAGCATGTTTTGCAACGCAAGGGT
CTGCTATCGTATGCATAGCTGCGGGTGGTTGGATTTCTCGGCATATGTCG
CTGAAGACGGAGCCTATGGATAAAAACGTGCTTCAGTGTTTCGAAGGGGA
TGTGCCACTGCTGGCCTGTCGGTGTGTGTGTATGAACATTGGCGCGACAC
AGTCGACACGGCAGAGCGCTCACGCGCAGGGGGCGTTTTCGATATCTCCG
CGACATATCTTCCAAGACACAATTTACGGCTTGAGTCCGGCAGCCTCCAC
CTCTCCACTTCCCTTGCATGATACACGAAAACAACAACATCCGGAAGTGA
TATCGAGAACTAGGTAGGGTTGAGAAAACATTTTTGAGCCACCTTTGACC
AAGTAGGAACGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAACAATG
CTCCGTCCTCTCGAGGTCGCGTGGTCAACGGCCTAACCGCTACAATGCAC
CATGCAAAACACAACATTACCCCCCCCCCTCCGGCAAGGTCAACGGTCTA
ACGACTACCGCATGCACGGCTATCAGTGCACCCCCAACCCACCCCCCGCC
TATGCCACCTCGAAAACCCGCTTCCTGCTCCGCGGCAGGAGGACAACTAC
GCCGACTCCAGGAACGGCACAACGCGGCCGGGAGAGTTGCTAGTCGCCGA
CGGGAGCATGCTTAGTCCCCCCGCCGTCCTAGACATGTGCGCGCTTTACG
GCAGATCCAATCCTTCCCTGGTGGTTGGGTTGCTCAGGTCGCTGGGGGAG
TTGGATGGCGGAGCTGCAGGCGTGTCTTCCCTGGCTGAGGGTCTCGAGAA
GGCCGTGCTGGCAGCGGCCGGCGCGCTGGCGGAAGTCCACGCGAAGGTAG
AGTGTTTAGGGTTCGGAGTCTATGGCGTTGTCTTGCGTGCGCTTTTCGTT
TGTCTCTTGTAGACCGTGGCAGGAGCAGCAGCAAACAACGACGACGACAA
CAACAACAGTAGCAACGGCAGCACTAACAACAACAAATTCAACAACAGCA
AACGGCAGCAAAAAACGCAGGAGCAACAGTGTAAAGAACGTAAAATCCGG
CACCATCACCAACGACATCCGTTGTGCCTGCGCCTGCACGTATACCGCAT
ATAACCCTCACGGCAGATGGCCGGCGCCCAAGATGGCCTCGGTCTCGGAC
CTCCGATCGACCACACGGAGGCCTCCGATATCCTGTCCTACGTGACCGAC
GTCGCCGTCAGCGTTGGCTCTCTCCTCCAAGCCTCCAGTGGTGTCCGTGC
TGTCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
GCAGTGGCGGCGGTGGCGGTAGCGGTGGAGGAATCGGGCTGCTGGCGCAG
CGGCTTCAAGGGTCTGACGGCGAGGTTTCCCCCGAGGGGCTGGCGGCAGC
GCTGGCCCTGACTTTCGAGGCCACGCTGCCCGCCCTGGAAGGCTTTCTGC
TGGCGCCGACCTCCTCCGGCAAGGTGTGACTCGAATGTTTTGCGGAGGGG
GCTTTGTTGTTGTTGTTGGTGTTGGTGTTGTTGTTGTTGACGTGTGCATT
GTGGATATTGTTGTTGTTGGTGATGATGTTGTTGTTGCGGTTATGTCCCT
GAGAGTTGGCCATGTGTTCCGTACATACGCAAGGGCAGAGAGGCGTTTTG
GGCACGACGGTTGGTCGTTTCAGGCCTCCCGAAACCAACAAGCAGAGATA
ACAATCAGGTTCGTGTGAAGGGGCAGCACTCTTTCCCTGGCGACACGCCC
ACAGATCGATTCCGTTAGTTCGCCTCCCATAAATCACCCGTGTCAATGCT
TCGCGTTCGTCTTTGCTGGTCACAGGTCGGGGCACCTGACTATGAGAGCG
TGAGGGCGAGGGGACGCGTGGCGAGGCAGTGGCTCCTCCGGTGCCTCCAC
GGGCTGATAGGGCCGGTCTTTCTGCAGCCGCTAGGCCTGCAGGAGGCGTC
GCCATCTGTAGCGGGGAGCGGGGACGGAGACGGGGCAGGAGATGCCGGGG
TGGCAGGTGACGGCTCGTTTTGTTCATGCGTTTTCGTTAGTCCTGTTCGG
CGCAAGCATTGCCTGAGAATTTGCGCGTTGTTTTCGTATTTTTCCGGCTG
TAACATGACCAAAGCTCCAGTTGCAGCAGGTTCAATTTCATCGGTAGCCC
TACCTTGATCTCCTTGCGCCCACTCCCCCGGTGTTTGTCACGTCTCCTCG
TTATTTGCACAACCCATCATGTATCTCGTCGTTCGCGGTCTTAACGCTAC
AAAAAAAAAAAAAACACCGGACCCCGAACACGCCACTCCAACGACAACGA
CAACGACAACGACAACGACAACAACAACAACGCGATGGGCTAATAAAAAC
ACACTACGCCGTACACGCACCCCCCATGTCTCAAGACGGCCTGTTCAGCT
TCGTCACCTCCGTCACCGCCGCCTCCGGCCACCTCGCGCCCACCGGCTAT
GCGGGGTCCCTCCTCGGGGAGTACAACCGCCGCTTCCGCCTCGCCGACGC
CCTCGACCAAGCCCAGGCCCTCGGAACGCAACCAATCCCGCCGCATCCGC
CGCATCCGCCGTCGGAGAAGCAACGGACACCACGGGTGGGCCTAGCGCCG
GGCCTAGTCCTCGGTCCCGAGCGCACGGAGTACCTGACGGGGGTCCTCCG
CGCCCTACCCGTTTCGGAGGAAGGGGTTTCGAAGGAGGCAGAGGCGGCGG
CGGCGGCGGCGGCGGCGGCGGGGGCGAGGGCCATGTCGGCGGCGTTGGAC
ATGGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig82:128259..131514-

>mRNA_Ecto-sp6_S_contig82.17412.1 ID=mRNA_Ecto-sp6_S_contig82.17412.1|Name=mRNA_Ecto-sp6_S_contig82.17412.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp6_S_contig82:128259..131514- (Ectocarpus species6 EcLAC_371)
AGGTTTCGTAGGCGACATTACGAATCTACTGCTGTAGGGCAGCAGCAGCA
GCAGGAGCAGCAGCAGCAGCCGTCGGAAGAACCCGCCCCCCTGCAAGAAC
TCGGGAGGCGTGTTTTTCTGGTGCTGCTGCGAGCGGTTGGGCCGGAACAC
GCATCGCTGGCCAAGGAGGACAACTACGCCGACTCCAGGAACGGCACAAC
GCGGCCGGGAGAGTTGCTAGTCGCCGACGGGAGCATGCTTAGTCCCCCCG
CCGTCCTAGACATGTGCGCGCTTTACGGCAGATCCAATCCTTCCCTGGTG
GTTGGGTTGCTCAGGTCGCTGGGGGAGTTGGATGGCGGAGCTGCAGGCGT
GTCTTCCCTGGCTGAGGGTCTCGAGAAGGCCGTGCTGGCAGCGGCCGGCG
CGCTGGCGGAAGTCCACGCGAAGATGGCCGGCGCCCAAGATGGCCTCGGT
CTCGGACCTCCGATCGACCACACGGAGGCCTCCGATATCCTGTCCTACGT
GACCGACGTCGCCGTCAGCGTTGGCTCTCTCCTCCAAGCCTCCAGTGGTG
TCCGTGCTGTCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCAGTGGCGGCGGTGGCGGTAGCGGTGGAGGAATCGGGCTGCT
GGCGCAGCGGCTTCAAGGGTCTGACGGCGAGGTTTCCCCCGAGGGGCTGG
CGGCAGCGCTGGCCCTGACTTTCGAGGCCACGCTGCCCGCCCTGGAAGGC
TTTCTGCTGGCGCCGACCTCCTCCGGCAAGGTCGGGGCACCTGACTATGA
GAGCGTGAGGGCGAGGGGACGCGTGGCGAGGCAGTGGCTCCTCCGGTGCC
TCCACGGGCTGATAGGGCCGGTCTTTCTGCAGCCGCTAGGCCTGCAGGAG
GCGTCGCCATCTGTAGCGGGGAGCGGGGACGGAGACGGGGCAGGAGATGC
CGGGGTGGCAGACGGCCTGTTCAGCTTCGTCACCTCCGTCACCGCCGCCT
CCGGCCACCTCGCGCCCACCGGCTATGCGGGGTCCCTCCTCGGGGAGTAC
AACCGCCGCTTCCGCCTCGCCGACGCCCTCGACCAAGCCCAGGCCCTCGG
AACGCAACCAATCCCGCCGCATCCGCCGCATCCGCCGTCGGAGAAGCAAC
GGACACCACGGGTGGGCCTAGCGCCGGGCCTAGTCCTCGGTCCCGAGCGC
ACGGAGTACCTGACGGGGGTCCTCCGCGCCCTACCCGTTTCGGAGGAAGG
GGTTTCGAAGGAGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGG
CGAGGGCCATGTCGGCGGCGTTGGACATGGGG
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