mRNA_Ecto-sp6_S_contig81.17401.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig81.17401.1
Unique NamemRNA_Ecto-sp6_S_contig81.17401.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig81.17401.1 vs. uniprot
Match: D7G1Q6_ECTSI (EF hand family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q6_ECTSI)

HSP 1 Score: 917 bits (2371), Expect = 0.000e+0
Identity = 470/484 (97.11%), Postives = 474/484 (97.93%), Query Frame = 1
Query:    1 MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFNATDVRVLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPRAARSRQAAKEIVQAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQAPAPTTKDFKNSMTRGGDVISEIGEVGHYSTGTTVTLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVWPDPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKIGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVHMLFRGLDSANTGAVPLSSIRAACNFSSSPAVTEGKACEEEITTEFLQHLQNNEQEGLGESRSMVTAEHFQDAFRDIGTACTSLLAACSWEAASLQEEKKDRGHLDTDADGDVGEALFMGVVSSVGG 1452
            MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFNATDVRVLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPRA RSRQAAKEIVQAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQAPAPTTK FKNSM R GDV+SEIGEVGHYSTGTTVTLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVW DPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGK+GPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVH LFRGLDSANTGAVPLSSIRAAC+FSSSPAV EGKACEEEITTEFLQHLQNNEQEGLGES SMVTAEHFQDAFRDIGTACTSL AACSWEAASLQEEKKDRGHLDTDADG+ GEALFMGVVSSVGG
Sbjct:    1 MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFNATDVRVLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPRAVRSRQAAKEIVQAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQAPAPTTKAFKNSMRRSGDVMSEIGEVGHYSTGTTVTLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVWRDPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKVGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVHKLFRGLDSANTGAVPLSSIRAACDFSSSPAVIEGKACEEEITTEFLQHLQNNEQEGLGESSSMVTAEHFQDAFRDIGTACTSL-AACSWEAASLQEEKKDRGHLDTDADGNAGEALFMGVVSSVGG 483          
BLAST of mRNA_Ecto-sp6_S_contig81.17401.1 vs. uniprot
Match: A0A6H5L3H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H9_9PHAE)

HSP 1 Score: 661 bits (1706), Expect = 2.070e-235
Identity = 360/457 (78.77%), Postives = 367/457 (80.31%), Query Frame = 1
Query:    1 MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFNATDVRVLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPRAARSRQAAKEIVQAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQ----------------------------------------APAPTTKDFKNSMTRGGDVISEIGEVGHYSTGTTVTLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVWPDPGPHHASLPRGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKIGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQ-------------------------ICLDKLMHFFRAGGLSEARRKVVHMLFRGLDSANTGAVPLSSIRAACNFSSSPAVTEG 1176
            MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRN+AVFNATDVRVLYHADKPGAKDAGRG SESHTSYIHPEKVAATKERSAYIRPGPRA RSR AAKEIV AEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQ                                        APAP+TK  KN MTRGGD +SEIGE GHYSTGTTVTLWNTGGMA GG ADRAS GRTSRFTEPGVHPSF QEVWPD GPHHASLPRGLSDLEARSLMFLK RVIERAQEKPLPS+RGLW    PRTY DAVGKIGPAEFREGMAEFEVPVTKCEVW VTTAFDT+NRGQ                         ICLDKL+HFFRAGGLSEARRKVVH LFRGLDSANTGAVPLSSIRA C+FSSSPAV  G
Sbjct:    1 MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNKAVFNATDVRVLYHADKPGAKDAGRGTSESHTSYIHPEKVAATKERSAYIRPGPRAVRSRLAAKEIVLAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRAAKQDSVKPQPENAPQGNHPTDIFKPTWQPIPKLPADLFVTKYLCSGHAARAVPTKAPAPSTKVLKNGMTRGGDAMSEIGEGGHYSTGTTVTLWNTGGMARGGKADRASLGRTSRFTEPGVHPSFSQEVWPDAGPHHASLPRGLSDLEARSLMFLKKRVIERAQEKPLPSMRGLW----PRTYADAVGKIGPAEFREGMAEFEVPVTKCEVWVVTTAFDTNNRGQEDAQRHGLHRSFKTKATNDFPVILQICLDKLIHFFRAGGLSEARRKVVHELFRGLDSANTGAVPLSSIRAVCDFSSSPAVIRG 453          
BLAST of mRNA_Ecto-sp6_S_contig81.17401.1 vs. uniprot
Match: A0A078A8P8_STYLE (Calcyphosin-like protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A8P8_STYLE)

HSP 1 Score: 59.3 bits (142), Expect = 9.490e-6
Identity = 44/179 (24.58%), Postives = 85/179 (47.49%), Query Frame = 1
Query:  790 LKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGK--IGPAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLSEARRKVVHMLFRGLDSANTGAVPLSSIRAACNFSSSPAVTEGKACEEEITTEFLQHLQNNEQEGLGESRSMVTAEHFQDAFRDIGTACTS 1320
            +K +++ER+       +RG+ R+      +D  G   +   +FR G+ ++ + ++K E   V   FD D  GQ+  ++ +   + G L+  R++ + M +  LD    G V L  I    + S  P V +GK   +++  EF++     E++G+      VT + F D + D+  +  S
Sbjct:  308 IKQKIVERSAN----GIRGIARIF---KAMDENGSKTLDVDDFRWGLKDYGITISKEEAQQVMEHFDRDGNGQVDFNEFLRAMK-GDLNTFRKRYIKMAYDKLDINKDGLVKLDDISKIYDASRHPDVLQGKKTPDQVFVEFMKLWDTQEKDGI------VTFDEFCDYYSDVSASIDS 472          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig81.17401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G1Q6_ECTSI0.000e+097.11EF hand family protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3H9_9PHAE2.070e-23578.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A078A8P8_STYLE9.490e-624.58Calcyphosin-like protein n=1 Tax=Stylonychia lemna... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig81contigEcto-sp6_S_contig81:744055..751304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score69.3
Seed ortholog evalue5.5e-09
Seed eggNOG ortholog5911.EAR84492
Preferred nameCAPSL
Model size1455
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0035556,GO:0043167,GO:0043169,GO:0044424,GO:0044464,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007
Exons12
EggNOG free text desc.EF-hand domain pair
EggNOG OGs3ZE82@5878,KOG0032@1,KOG0032@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-11_000040.1
Cds size1455
COG Functional cat.T
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig81.17401.1prot_Ecto-sp6_S_contig81.17401.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig81 744055..751304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350452.9752815-CDS-Ecto-sp6_S_contig81:744054..7442181682350452.9752815-CDS-Ecto-sp6_S_contig81:744054..744218Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 744055..744218 +
1682350452.9846144-CDS-Ecto-sp6_S_contig81:744808..7448961682350452.9846144-CDS-Ecto-sp6_S_contig81:744808..744896Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 744809..744896 +
1682350452.992522-CDS-Ecto-sp6_S_contig81:745153..7452271682350452.992522-CDS-Ecto-sp6_S_contig81:745153..745227Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 745154..745227 +
1682350453.0002654-CDS-Ecto-sp6_S_contig81:745865..7459531682350453.0002654-CDS-Ecto-sp6_S_contig81:745865..745953Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 745866..745953 +
1682350453.0080183-CDS-Ecto-sp6_S_contig81:746330..7464111682350453.0080183-CDS-Ecto-sp6_S_contig81:746330..746411Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 746331..746411 +
1682350453.0158315-CDS-Ecto-sp6_S_contig81:747161..7473321682350453.0158315-CDS-Ecto-sp6_S_contig81:747161..747332Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 747162..747332 +
1682350453.0235455-CDS-Ecto-sp6_S_contig81:747981..7481781682350453.0235455-CDS-Ecto-sp6_S_contig81:747981..748178Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 747982..748178 +
1682350453.031087-CDS-Ecto-sp6_S_contig81:749131..7491871682350453.031087-CDS-Ecto-sp6_S_contig81:749131..749187Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 749132..749187 +
1682350453.038652-CDS-Ecto-sp6_S_contig81:749624..7497071682350453.038652-CDS-Ecto-sp6_S_contig81:749624..749707Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 749625..749707 +
1682350453.046052-CDS-Ecto-sp6_S_contig81:750241..7504141682350453.046052-CDS-Ecto-sp6_S_contig81:750241..750414Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 750242..750414 +
1682350453.0538273-CDS-Ecto-sp6_S_contig81:750721..7507871682350453.0538273-CDS-Ecto-sp6_S_contig81:750721..750787Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 750722..750787 +
1682350453.0613453-CDS-Ecto-sp6_S_contig81:751090..7513041682350453.0613453-CDS-Ecto-sp6_S_contig81:751090..751304Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 751091..751304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig81.17401.1

>prot_Ecto-sp6_S_contig81.17401.1 ID=prot_Ecto-sp6_S_contig81.17401.1|Name=mRNA_Ecto-sp6_S_contig81.17401.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=485bp
MASLRSAMFAGYNKFDDAKVRIGSWREELAMKELTGVTRLANPRNRAVFN
ATDVRVLYHADKPGAKDAGRGKSESHTSYIHPEKVAATKERSAYIRPGPR
AARSRQAAKEIVQAEEAEREALEREKKKDGDFDTTFRQSYKRYSDEASRA
AKQDSVKPQPENAPQAPAPTTKDFKNSMTRGGDVISEIGEVGHYSTGTTV
TLWNTGGMAPGGTADRASFGRTSRFTEPGVHPSFFQEVWPDPGPHHASLP
RGLSDLEARSLMFLKNRVIERAQEKPLPSVRGLWRLLWPRTYVDAVGKIG
PAEFREGMAEFEVPVTKCEVWAVTTAFDTDNRGQICLDKLMHFFRAGGLS
EARRKVVHMLFRGLDSANTGAVPLSSIRAACNFSSSPAVTEGKACEEEIT
TEFLQHLQNNEQEGLGESRSMVTAEHFQDAFRDIGTACTSLLAACSWEAA
SLQEEKKDRGHLDTDADGDVGEALFMGVVSSVGG*
back to top

mRNA from alignment at Ecto-sp6_S_contig81:744055..751304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig81.17401.1 ID=mRNA_Ecto-sp6_S_contig81.17401.1|Name=mRNA_Ecto-sp6_S_contig81.17401.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7250bp|location=Sequence derived from alignment at Ecto-sp6_S_contig81:744055..751304+ (Ectocarpus species6 EcLAC_371)
ATGGCGTCGTTGAGGTCGGCAATGTTTGCCGGCTACAACAAGTTCGACGA TGCCAAAGTTCGAATCGGGTCCTGGCGTGAGGAGCTGGCCATGAAAGAGC TCACAGGGGTGACTCGCCTCGCGAACCCGCGGAATAGAGCTGTTTTCAAC GCAACTGATGTAAGGTGAGACGGAAAGATTTTCGCCTCCGAACGACCTGC GCAAGTGCCAAGGTCATTGGTGTACTGAAAACCCCCAGCAGTACTTGTAC GGGCTTTGGTGTAGTCTAAAGACTTGTACGTGCCTGCGTCCAAAGCTCAC ATAGCCTGGGGACACTCTCTCCAGCCACCACTTTTATGAATTCTTCATGT ATCATACAGTAGTCACTACGCCGTAGAGTAGCATCACGCTAGCTAGCGCT GCTAGTACGTGTGTCGCACAAGTCGCTCTTATCCCTCATAGCGCCCGGAC GGAAGAGAGTATGGGAGCCCTCTCGAAGCTACCCGTACGCTATATGCTCA CCAACCGGTGATTCCGTTTTTGTTTCCTCCGGCGCAATTGATCATGAAGA CCTGTCGAGAACCATGCCGCCCCAAACATACATGCGCGAGTTCATGCATA TTGTAGAAACGTGTTGTCTCGCTTACAATAGCTACCGAAGAGCAAACACG AAGTGGCGGAGCGCCTTCACAACCATGACACTTGATATTTAACACTCTTT ACAACAGCAAGTCGAGGATCAAGGTCCGACGCTCAGTTTACATTTTTAAT GCAGGGTGCTGTATCATGCAGACAAGCCGGGCGCCAAGGACGCTGGGAGG GGAAAAAGCGAATCGCATACCTCTTACATTCATCCGGAGAAGGTGAGCTG TTGTATGTAAAGTAGCTCGTTCATCAAACCACTGTTCCGCAGCGTCCAGA GGAAAGAACCTGCTACGCCTGAAATTCCCTGAAGTACACGGTACCAGCAG GAGTGGATCAGAGCGCACCACTTTCAAGTCTTAAGGAGAGTTAGTTCTGA AATTGTGCAACATTGGTATAGTTTCCGGATTGGACACTCTGTCGACCACC ATGCGGTTGGCGCATTGTCTATTCTCGTTGACGTCCTACTTGGTTGCAGG TTGCTGCGACGAAGGAAAGGTCGGCATACATCAGGCCAGGGCCTCGTGCG GCACGTTCGCGACAAGCAGCAAAGTGAGTGAATGGCATCGTACATTATCT GTAAATGGCCAACACAGTTGGTATGGACTGGTGTAGCATTCTGTCGTTGT GTGCGTGGCTTTGGGCAGATGAATACCGCTAGAACGTAAACCTAAGCAAC GTAGCAAAGGTTAGTTCGCGTGAGGTCGGAACCGCGAAAATCCATTCCTT TCAACCTCAACTCTCTGACCCGGTGAATGCGGAGGCATACGTTACCGCCG TTCACAAAGGTAGCTCAACGGCGAGTTGAAGGTTGGCCGGCTAGATCACC AGACTTCATGCACGCCGAAAAGGTTGTCTAGATTTCGGAAAGAGGGATAC CCTCTACGTAGTTCCTCGATCGCTCATCTTCCTGAAGGCATGCCCCATTC CCGCGTACACGCTACCGAATCAAAGAGCATGGCGAGCATTGAAGAAAATT CTGCGAACATTACTTGAGTGGCGCTATGTTCGCTGCGCTCCGCATGGAGG AAAAGGACACTATACCCAGCTCTGACAGCAGCCATCCAGGGCGATGGTCA TCACAGAGATAAACAGCACTAGAGTTACCACGTGACGAGAACCAAACGTT CGCCTCACTTGCGACTTCGATTGTGTATCGTTCGGTGATGCATTCCTGCA CCTGTTGGCAGAGAAATTGTCCAGGCGGAGGAAGCGGAACGCGAAGCCCT CGAGAGGGAGAAGAAGAAAGATGGGGATTTCGATACAACCTTCAGACAGG TATGCGCCCGTGATGTGTGTAGCGTGCATAAATATGCAAAGGTTTGCCGT GTGTGATATGGGCGCTGCAAAGCAGTTTTTCAGCCGGTTGAGATTGCTAT TCCAAATGCCATCATAGGTCTATCGTGGCCATGCACAACAAGATGTGGCT GCAGCGAGCAGCGGGAGGAAGCCTTTGTCATCCACGTGGCAAAACATGTA GAGCACCAATGATCAATCTACGCTTCGTTTTTCGTAGTAACAGTGTGATA CAACCACTGACATCCTCCTCCATGGTCGTGTACGATGCGCGTTCTATAAG AACAATCCCAGCCACGAACAACAGAGAGGTTGGACAACACCAACACCCCC TTATACAAATTGACTGTCCTCGTCAGTCCTACAAGAGGTATTCGGACGAA GCATCAAGAGCAGCGAAGCAGGACAGCGTCAAGCCCCAGCCAGAGAATGC TCCGCAGGTGAGGTTTGGACCACATCTCAGCTACCTTCATGTCGGGGCTT TGGAGATGCGTCTATTAGTCACTCTGGGTGTCGGCATGGTGACCCGTTTA GAGGTGGACATGCTTAGCTGTCTGACATCCTGCCTTCGGCAAATTCCTCG AAACGTAGGCGTCGATACCGCTGGGCAGCCTCTTCTTTTCTGGCCAAATT TCATGCCACACCAAACAAATTTCCACCGCTATATGTTTAGGTTCATCTCC GAATGGATTCGAACAGGAGCTTACCACAGAGACACATGAATATCCAAGAA ACTCGTTGTGCAGCGAAATAGACTCAGATGGTGTATTAGCAGAAGAATCG ACTACTGACCTCACCAACTTTGTATTCTCCATGAACTGTCGATTCCTAAA GTACAGGTCACCTCTATCCGCGCTCTGCGAACTACGATTTTATTCAGGTT GTATTATATTTCTATTTTGCTCCACCGCACGTGTACACGTAGCAGCGAGA GATGCCATATTAACCTAACTTCGAAAGAAAGCGATGGCATTCTTCAGCGC CCCCCACACACCCTCCGTTTGTAGGTATCAACCCTGAGAGCTTGTTTGGT AGAGTTCGTACGTGTGGTCCAGCTCAATCTCTTGCACCGTCCTGCAGGGA AATTGCCCCACAGACATCGTCAAACGCTAACATACCAGTTTTCTTGCAAT CTGGTTGTAACAAAATACTTGTGATCTGGGCATGTCGCGCGGGTGGTGCC AACGAAGGCACCTGCGCCTACCACCAAGGACTTCAAGAACAGCATGACCA GGGGTGGTGACGTGATATCGGAGATTGGAGAGGTGGGTCACTACTCCACC GGGACGACGGTCACCCTGTGGAACACGGGAGGAATGGCGCCCGGGGGCAC GGCAGATAGGGCCTCGTTCGGCCGTACGGTGGGTGCTCACTGAACGCCAA GGGAACAAAGGGAAATATATCTGTCTTGATGTTGAGAGTTGCTTTCCAAG TATTTGCCGAGTGGAACCGCTGCTCTTGACACTCTAAACGCTATAGAACC GAAGAGCACCCCCCATCGGGGAGAAAAATTGGTCGGACGAAGAACGTAGC CAAGGGGCATATCCACAATAGGTCCCCTTAGCCGCTGGGAGCCAGAGCAG CATCTCAACTGCTACTGCTGCTAGGGTACTTTACTTGACGTGTCGTCATC ACCACGAAGCGAAAAAGCTCTTTCGACGCCGGCCGATCGCGACCATTGGA CGGTGGTTGTGGGTACAGAACTATAGCACACTGCAACACAAGAAACACGA CAGAAACACGAGATGAAATCAAATCGTCTTACCCATGAACGTAACCCACT CTGCCGTTACTTCACGTGGTTTCTGGTTGATCGATACGCCGAGAAGCGGT GGCCTTGCACACCACACCGTCTACACATTGGCGTTTCTTTACAAGGCGAT GTTCGAACTCGTATGCAAGGACAAACTGGGCTAACGACAAGCCGAAAATG AGGGATTTCTTTCAATCGAGAGTCTGAGCGCCTCCCCCCACCCCTGCGTG ACGTCGCATGCTTTGTCCAAACAACAGTCGAGGTTCACCGAACCCGGCGT CCACCCTTCGTTTTTCCAAGAGGTTTGGCCGGACCCTGGCCCTCATCATG CCTCTCTTCCCCGAGGCCTCAGCGACCTGGAAGCCCGGAGTTTGATGTTC CTCAAGAACCGGGTCATCGAGAGGGCACAGGAGAAGCCGCTGCCGTCAGT GCGCGGGCTGTGGCGCTTGCTGTGGTGGGTTTGCGTGAAATTATTATCGT GACGCTGTCCGTCGTGTTCAGTTGGTTCCTGATTGAGTTTGCGTTTGAGC GTTGCTAAACATATATTCTTCTCTGAAAGGTCGCAACCCTACTCAACAAT GTTCGCCACAATCATTTTCAAATATATTACTGTTGCGTCCGACAACTACT ACTTCGTACGAAGTCTTGTCTCTGAAACTGGGGTCCCCCGGGAATTGTTC CCGGGGTCACACCGACAAATCCTTTGCCGTTGCAGTTCCTTAACTCCAGT GTCCTCAAGCCCACCTGCACTCCTTTGCACGAAAGAGAGAAAACCATCTC TTTGTTGTGCGCGTGATGGATCTCCCGAGCTACCGGTAGTGAGAAGCCGG GTTCGAGGTTACCGACTACTGTAGGCCATCGAGGCCGCCGAGAATGGCCT TCTTAGAAAGCTAATTTCGAAGCGTCTGGACAACGAATTCCAGGGTTGTT TAAACCGGACATGAAGCGATAAATGTCACCAATTATGTTGTTGAGAATAA ACAAAGTTCTACATGCAATGGAGGCGGAGGGTCGCTGTGCCCTCTGTTGG CAGTCAGAGTCCAATGCATGGATCGCAGAAATAATCCTTTCTTCATGGCC CGGCTGGGCTTCCCAGAACCAAGTAGAAAAACGTTAGCTCAAGAGGCCCC TAGACAAGATGGGGTGGACTGGGTAGACAGAAGTACGTGTGGGTCCTTTC ACCGTCCTTTTAACGAGGCACGCCATCGGAGGCCGTTGGAGAACATGTCG TCGTTCGTCTGAATGCTACACTATTCCTGCAAGACATGGGGATGACTGCT TGAGGCACAAGAGGCACAATATGAACCTGGCGAATAACAAACAGACCTTC CCTCTTCGCCGGTCTTGCTGTCATCGCTCTATACCTAACTCATCGTGTGT TATCGTGTGCATTCGAGCGTTTGGTAGGCCCCGGACCTACGTGGATGCTG TGGGGAAAATCGGCCCTGCGGAGTTCCGAGAGGGTGAGTCAGACGCCCTC GTGACTTTGCTCTATGGTACTGGATTGGTTGATTAAGGGTACAGTGCGCA CTATCGCAATCGGTTCTGGCTAGTTCAGGAACGAACGGTGTCGATGCTGT TATCGTCGTCTTCGTCAGTGTTGTAGCTGTTCCGTCCCTTGTTGGTCGTT GGAGATGTTGATCGTGTTGTGTTTTGGTCTCGCCGCACAGCTAGATCATG TCTCTTGAAGGGTAGCAGGCCAACCACAAAAATTGTACTCAGGATTGTTC TCGTCAGCTTGTTGTGTGTTGCATGGCAATAGCGCAGTTCCTGTCGTTGC GGGGGACATAGCGCAGCAGATGTCGTTTTGGTATCGCGTACCTCAAGTGA TTTTGCAGAATCATTTTGTACAATTGGTGTCAGGCCACCGCCGTCCCTCA CAAACAATTCCCGACGGCAGGGATGGCCGAGTTTGAGGTCCCCGTGACCA AGTGCGAGGTTTGGGCCGTTACAACTGCGTTCGACACAGACAACCGTGGC CAGGTAGGACGTGGAGGAAAGCACACACTGCTAACGCAGTGAGCTGGAGT CACCTATTCGTATGTCGAAACATTGACCGGAGGGATCTCGTGGGGTTACC TAACGCCACATACATGTGGAGAGCACGGTATTTAGTGGTGCATCACCTGT ATTGGCACGAGGAGGCCTCACCAAATCCAACGCTTCCATCAAATGATCCA TTCCGAGGGAGAGAATACCTTCTTAATTTTCGACAGCAGGACAGCCGTGG TATTGCAATTTCCCGACGATGAGCCTGAACCGTAAAACCTGTTTGTTAGA GACCTGGTTAGTCTTGGCACCCTGTTTCTTGCTTACATTGGTAGCGGCAG GTCTTCTGCGACAAACGGACCAGTTCTTTCCGTTTGTTTCCTCCAGCCCT AACCCTGTTAGTTAGAATATGGCTTTCGTAACCAAGTGTCCTAGTGTTGA CGTTTTCTTCAGGAGCACGCCCAACGCCATGGTCTACACCCTCCGTTCAA AACCAAGGCCACAAATGATTTCCCGGATATTTTACAGATCTGTTTGGACA AGCTGATGCACTTCTTTCGGGCAGGAGGGCTGTCTGAGGCTCGCCGCAAG GTTGTCCACATGCTGTTCCGGGGCCTTGATTCCGCAAATACAGGAGCAGT ACCGCTGAGCAGCATTCGAGCGGCGTGCAACTTTTCAAGCTCGCCGGCTG TCACCGAAGGGTACGTAGGGTGACTTTGTCCGTTCACAGGGACCCAATAC ATTGGGTGGACTAGGAGGCGCCTCCAAACAGAGTGATGTGTGACCCAACG ACCTAATTCGGAGCCCCGCTTCATCAAGATCGAGTCGTACACGGACATTC GTCGGCACCGGCTGGGTGTGATGGGGGGGGGGGTGGTTACGATGCCACCA TGTACGATTGGGGTCGGTTAGTGGAGTTGGCCATTTTTTCTACCCTGCCT GTACCTTCCCCAATGACAGTCTATCTGTCTTGACCCCCACTTGCTCACAT GTTTCGGCCTTGTCCAGGAAAGCATGCGAAGAGGAGATAACGACAGAGTT CCTACAACATCTCCAAAACAACGAACAAGAAGGGTGAGCGGATGACATGT TATGGTCAGGTTTTCACCCGCAAGGCGCGAAGTCGAGCTATCCTTCTCGA TCTACAGCCAATGTACGTTGCCGTTCGAACACGTACCACACATTCCGACG GCGATCACCCCAAAAAAGCCCACGTGGGTGGACACAACTGCGGGGAAACC TATCATACAGTTCGTAGGGGGGACTCTTTCCCCTGTTCCTCTTACGTATC ATCCGGCTACTGTTGTACTGTTCCCTCCCGAACCTCTCTCGCTCTCTCTG CGTGTGTCTCTGTGTCTCTCTCGACCATTCCCCCAGACTAGGAGAGTCCA GGTCCATGGTAACTGCGGAGCATTTCCAGGATGCATTTCGCGACATCGGA ACCGCCTGCACTTCGTTGTTGGCAGCGTGTTCATGGGAAGCTGCTTCCCT CCAAGAAGAGAAAAAGGACAGGGGGCACCTCGATACTGATGCCGATGGGG ATGTCGGCGAAGCGTTATTTATGGGAGTTGTATCGTCCGTTGGCGGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig81:744055..751304+

>mRNA_Ecto-sp6_S_contig81.17401.1 ID=mRNA_Ecto-sp6_S_contig81.17401.1|Name=mRNA_Ecto-sp6_S_contig81.17401.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1455bp|location=Sequence derived from alignment at Ecto-sp6_S_contig81:744055..751304+ (Ectocarpus species6 EcLAC_371)
ATGGCGTCGTTGAGGTCGGCAATGTTTGCCGGCTACAACAAGTTCGACGA
TGCCAAAGTTCGAATCGGGTCCTGGCGTGAGGAGCTGGCCATGAAAGAGC
TCACAGGGGTGACTCGCCTCGCGAACCCGCGGAATAGAGCTGTTTTCAAC
GCAACTGATGTAAGGGTGCTGTATCATGCAGACAAGCCGGGCGCCAAGGA
CGCTGGGAGGGGAAAAAGCGAATCGCATACCTCTTACATTCATCCGGAGA
AGGTTGCTGCGACGAAGGAAAGGTCGGCATACATCAGGCCAGGGCCTCGT
GCGGCACGTTCGCGACAAGCAGCAAAAGAAATTGTCCAGGCGGAGGAAGC
GGAACGCGAAGCCCTCGAGAGGGAGAAGAAGAAAGATGGGGATTTCGATA
CAACCTTCAGACAGTCCTACAAGAGGTATTCGGACGAAGCATCAAGAGCA
GCGAAGCAGGACAGCGTCAAGCCCCAGCCAGAGAATGCTCCGCAGGCACC
TGCGCCTACCACCAAGGACTTCAAGAACAGCATGACCAGGGGTGGTGACG
TGATATCGGAGATTGGAGAGGTGGGTCACTACTCCACCGGGACGACGGTC
ACCCTGTGGAACACGGGAGGAATGGCGCCCGGGGGCACGGCAGATAGGGC
CTCGTTCGGCCGTACGTCGAGGTTCACCGAACCCGGCGTCCACCCTTCGT
TTTTCCAAGAGGTTTGGCCGGACCCTGGCCCTCATCATGCCTCTCTTCCC
CGAGGCCTCAGCGACCTGGAAGCCCGGAGTTTGATGTTCCTCAAGAACCG
GGTCATCGAGAGGGCACAGGAGAAGCCGCTGCCGTCAGTGCGCGGGCTGT
GGCGCTTGCTGTGGCCCCGGACCTACGTGGATGCTGTGGGGAAAATCGGC
CCTGCGGAGTTCCGAGAGGGGATGGCCGAGTTTGAGGTCCCCGTGACCAA
GTGCGAGGTTTGGGCCGTTACAACTGCGTTCGACACAGACAACCGTGGCC
AGATCTGTTTGGACAAGCTGATGCACTTCTTTCGGGCAGGAGGGCTGTCT
GAGGCTCGCCGCAAGGTTGTCCACATGCTGTTCCGGGGCCTTGATTCCGC
AAATACAGGAGCAGTACCGCTGAGCAGCATTCGAGCGGCGTGCAACTTTT
CAAGCTCGCCGGCTGTCACCGAAGGGAAAGCATGCGAAGAGGAGATAACG
ACAGAGTTCCTACAACATCTCCAAAACAACGAACAAGAAGGACTAGGAGA
GTCCAGGTCCATGGTAACTGCGGAGCATTTCCAGGATGCATTTCGCGACA
TCGGAACCGCCTGCACTTCGTTGTTGGCAGCGTGTTCATGGGAAGCTGCT
TCCCTCCAAGAAGAGAAAAAGGACAGGGGGCACCTCGATACTGATGCCGA
TGGGGATGTCGGCGAAGCGTTATTTATGGGAGTTGTATCGTCCGTTGGCG
GGTAA
back to top