mRNA_Ecto-sp6_S_contig81.17400.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig81.17400.1
Unique NamemRNA_Ecto-sp6_S_contig81.17400.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig81.17400.1 vs. uniprot
Match: D7G1Q7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q7_ECTSI)

HSP 1 Score: 542 bits (1397), Expect = 7.620e-192
Identity = 323/350 (92.29%), Postives = 326/350 (93.14%), Query Frame = 1 
Query:   28 MSPPPDTIDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHGHSQETDVHQQQQQQRFAEGAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNTRAVELDKELQLQRRSFTRVLKSDRDVYEARTETAEANAERRQAACHSYGILKIFSGGRELKRLMTWVEKAESKFAEALRKLSAQAEDLGAANLGDLEGFAKDMSEDVSKLRQGVADSMRSRXXXXXXXXXXXXXXXXXEENGKGKPKEKTKKNKTRKTGSKGDGASVTDADDSKACSSGGERQDKGHVDHSSLERPMAKV 1077
            MSPPPDTIDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHGHSQETDVH+QQQQQRFAEGAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNTRAVELDKELQLQR+SFTRVLKSDRDVYE RTE AEANAERR               GRELKRLMTWVEKAESKFAEALRKLSAQAEDLGAANLGDLEGFAKDMSEDVSKLRQGVADSMRSRXXXXXXXXXXXXXXXXX EN KGK KEKTKK KTRKTGSKGDGASVTDADDSKA S GGERQDKGHVD +SLERPMAKV
Sbjct:    1 MSPPPDTIDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHGHSQETDVHEQQQQQRFAEGAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNTRAVELDKELQLQRKSFTRVLKSDRDVYETRTEAAEANAERR---------------GRELKRLMTWVEKAESKFAEALRKLSAQAEDLGAANLGDLEGFAKDMSEDVSKLRQGVADSMRSRXXXXXXXXXXXXXXXXXXENDKGKAKEKTKKTKTRKTGSKGDGASVTDADDSKARSDGGERQDKGHVDDNSLERPMAKV 335
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BLAST of mRNA_Ecto-sp6_S_contig81.17400.1 vs. uniprot
Match: A0A6H5L251_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L251_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 9.500e-135
Identity = 226/265 (85.28%), Postives = 235/265 (88.68%), Query Frame = 1 
Query:   46 TIDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQVKQMAQQLHHGHSQETDVHQQQQQQRFAEGAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNTRAVELDKELQLQRRSFTRVLKSDRDVYEARTETAEANAERRQAACHSYGILKIFSGGRELKRLMTWVEKAESKFAEALRKLSAQAEDLGAANLGDLEGFAKDMSEDVSKLRQGVADSMRSR 840
            T DSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANL AYQV+QMAQQLHHG ++ETDVH  QQQQR AE AAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLL+KAKRERKSHDGKVQRLEKSIATSN RAVEL      QRRSFTRVLKSDRDVYEARTE AEANAERR               G+ELKRLMTWVEKAESK+AEALRKLSAQA+DLGAANLGDLEGFAKDMSE+VSKLRQGVADS+RSR
Sbjct:   39 TTDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLPAYQVQQMAQQLHHGPTEETDVH-LQQQQRLAESAAPLEVRHLHGILQWLHQAKADMVENDRSKVQLEGDVRLLYNLLQKAKRERKSHDGKVQRLEKSIATSNARAVEL------QRRSFTRVLKSDRDVYEARTEAAEANAERR---------------GQELKRLMTWVEKAESKYAEALRKLSAQADDLGAANLGDLEGFAKDMSEEVSKLRQGVADSVRSR 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig81.17400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1Q7_ECTSI7.620e-19292.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L251_9PHAE9.500e-13585.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig81contigEcto-sp6_S_contig81:739054..743624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1184
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000050.1
Cds size1053
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig81.17400.1prot_Ecto-sp6_S_contig81.17400.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig81 739158..743597 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350452.8869307-UTR-Ecto-sp6_S_contig81:739053..7391571682350452.8869307-UTR-Ecto-sp6_S_contig81:739053..739157Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig81 739054..739157 -
1682350452.95232-UTR-Ecto-sp6_S_contig81:743597..7436241682350452.95232-UTR-Ecto-sp6_S_contig81:743597..743624Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig81 743598..743624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350452.8953416-CDS-Ecto-sp6_S_contig81:739157..7394241682350452.8953416-CDS-Ecto-sp6_S_contig81:739157..739424Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 739158..739424 -
1682350452.9029355-CDS-Ecto-sp6_S_contig81:739651..7397591682350452.9029355-CDS-Ecto-sp6_S_contig81:739651..739759Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 739652..739759 -
1682350452.9132798-CDS-Ecto-sp6_S_contig81:740004..7400651682350452.9132798-CDS-Ecto-sp6_S_contig81:740004..740065Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 740005..740065 -
1682350452.9210835-CDS-Ecto-sp6_S_contig81:740797..7409521682350452.9210835-CDS-Ecto-sp6_S_contig81:740797..740952Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 740798..740952 -
1682350452.9290361-CDS-Ecto-sp6_S_contig81:741309..7414801682350452.9290361-CDS-Ecto-sp6_S_contig81:741309..741480Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 741310..741480 -
1682350452.9367926-CDS-Ecto-sp6_S_contig81:742536..7428021682350452.9367926-CDS-Ecto-sp6_S_contig81:742536..742802Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 742537..742802 -
1682350452.944655-CDS-Ecto-sp6_S_contig81:743572..7435971682350452.944655-CDS-Ecto-sp6_S_contig81:743572..743597Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig81 743573..743597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig81.17400.1

>prot_Ecto-sp6_S_contig81.17400.1 ID=prot_Ecto-sp6_S_contig81.17400.1|Name=mRNA_Ecto-sp6_S_contig81.17400.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=351bp
MSPPPDTIDSDERTELDALRLENDTLRRHLGRLEDKVQRAEESANLQAYQ
VKQMAQQLHHGHSQETDVHQQQQQQRFAEGAAPLEVRHLHGILQWLHQAK
ADMVENDRSKVQLEGDVRLLYNLLEKAKRERKSHDGKVQRLEKSIATSNT
RAVELDKELQLQRRSFTRVLKSDRDVYEARTETAEANAERRQAACHSYGI
LKIFSGGRELKRLMTWVEKAESKFAEALRKLSAQAEDLGAANLGDLEGFA
KDMSEDVSKLRQGVADSMRSRSRSKSKGRSCGREEGTQEENGKGKPKEKT
KKNKTRKTGSKGDGASVTDADDSKACSSGGERQDKGHVDHSSLERPMAKV
*
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mRNA from alignment at Ecto-sp6_S_contig81:739054..743624-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig81.17400.1 ID=mRNA_Ecto-sp6_S_contig81.17400.1|Name=mRNA_Ecto-sp6_S_contig81.17400.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4571bp|location=Sequence derived from alignment at Ecto-sp6_S_contig81:739054..743624- (Ectocarpus species6 EcLAC_371)
AAAATTTGCCGCCTGGTACACCTCGACATGTCGCCGCCGCCAGATACAAT
AGGTAACGCGCGCGCCTGGCTTCACTAGCAGTAGCTCTGCGATGTGGAGT
GTTACGCTCGTGTTGCCCGGTGGACCCCACGAATGAGACCCCCCTCCAAG
GATGTCGCTGTTACATTGTATGATATTGCTGTACGTTGGAGCCAAGGGTT
CCCTCCAAGAAACGCCCCATGCTTTCAACTAACCTTGGATGTGTTGCTGG
ACTACACAGTACTGCTGTACAGTACAGTATCGCTTGGTCCTTGAACCTGT
TGAGGGTGTGGTTTGGTGTTTGGTGCTTGGTGTGTACAGCGAACACTGTT
GGGATCACCGCCCCAACAACGCCTCTTGTACGGTGGATCTCCATCCTTTG
ACTTTCTCTGTGTTGTTGTATTGGAATCGTTCGGTGCAGACGATAGACGG
AGAAGTGGCGTTTCCATGGCCTAGTCTATGCATTACACGTACCTAGACAA
TGTCACTGATCTCCATAAGACAAAAGTTCATTCTGTGCATTGCACAATAT
AAATCTACTTGTGCAGTACGCTAGAGGACGGGTAGTCTTTCAGTGATGGT
GTGAATATTTGCTAGTACGACGCCATGCTGCCTCGTGCGATGACAGAGTG
TTGCCCCTATTTTTCTCTGTAGCACAAAAGTGGCGTAGAACTTCGGCATC
TATGCGACGTCTGCGCTTCGTCGTCAAGGTTCAGCTGCCAATGTCTTGGT
ATGGAACAGCGAGTCCTAACTTTCACTTGTGTGCGCGGTGACTGTGTTGC
CTCTTCCGCACCTTCGCAACAGATTCGGACGAAAGGACCGAGCTCGATGC
CCTCCGGCTAGAAAATGACACGCTGAGAAGACACCTTGGAAGGCTGGAAG
ACAAGGTTCAGAGAGCGGAGGAGAGTGCTAACCTGCAGGCGTACCAGGTA
AAACAGATGGCCCAGCAGTTGCATCATGGGCATTCGCAGGAGACAGACGT
CCATCAGCAGCAGCAGCAGCAGAGGTTCGCAGAAGGTGCTGCCCCTCTCG
AGGTCCGCCACCTTCACGGCATCCTTCAATGGCTTCACGTGAGTTGCACC
AACGAGACAGTTGTCTCGACAAGTGTTATTGTAATTCGTTGAACAGTAGT
GCGGTTCGCGCCTGTGGTCGGGAGATACCCTCGTAATTCTGGAGGGCTTA
AGTTCGGATTGAAATGCCACCCGCCACTCTGCTGTTGAGAGAGTGCTTGC
GTTGAGATAGTGTTTGCGCATCAATACAGGCAACCCTATTCCGGTGTTGA
CAACGGGATTTCTGGGCCTCTCCCAAGGGGTGGACAGTGAGGGCGTGAAC
CACGGGAGGAAGTCCTTCAGAGAGTATGATCTCGACTCCGGCTCACCAAA
CGTTTTCATAGACGTTTAGATGCGGAGTCCAGAATACAGAGGATGGGCAA
ACAAACGTGGAACACACGAGAGGCCACATAACTTCTCCATCTAATGAGTG
CAACGCCAAGCAAATGTGTATGTATTTGTTTTGTACAGCTTTCACCTAAA
AAGTAGCATTTTACCTGAAGGCATGTACCGAGAGCAAAGAGGATGTTTAC
TCTGCAAATGTCCATCGTGGAAAGGCCAATGTTCATGATGGATATCAAGG
CTGTTCTCTTGCGGTGTATCGGTGACTATTGGTTGGAATTTCCAAGCCTG
GCGAACAGTACTCTTGGTGCCAGCGAATGCTTTTCCTATTACCACTTCTC
TGCGAAAGTCCCCTCTCTCCGTTTGCAGCGGGTTCTCGCCGACGAACAGC
TGAATCTCGGTTGTTGGGGGCACGAGTGGGCCGGATCCCCCAAAATTTGG
AAAGGTATCCCGTGACCCCAGGAATTACCTGTGCGACCTCCATCAAAGGT
CGAAAACAGTGCGTTCAAGACCCGGCAACAGCAGTGTTACGTCTCCCGCA
TTGGCGTGCTGTCGCCTACGTTCTTTCGGGCACCATGAACAGCACTGAGG
TGGACAAGCACGCTTAATTTTTTCTTCATCTTCGGGGGCATTTGGATACG
TTCAACGATCCTTTTATTTACACATGTGATTGCATGTTCTCCGCCCCCAA
TTCCCAACATGGCCATTTGTCCAACTCGAAACCACCCGAGGCAGCAAGCA
AAGGCGGACATGGTGGAGAATGACCGAAGCAAAGTCCAGCTGGAGGGCGA
CGTGCGGCTGTTGTACAACCTCTTGGAGAAGGCAAAGCGAGAAAGGAAGT
CACACGACGGGAAGGTCCAGCGCCTCGAGAAATCCATCGCGACCTCAAAC
ACCAGAGCAGTGGAGGTAAACTCGATGGCCACAGAACACTGCCCCCTCCT
CCATACGATTGTTGCCTCCAATGTTCAAGCGAAGAGTACAGTTTTATCGT
CGACCGCATGACCTTTATCGATGTACCCGCTGGCTGGATACAAAGCCATG
GGAGTATCTCGGGAATATATACTTGGAGGAGTTGCAACACACACGCGTCA
TAGCGTCATTTTTGAGCGCTACCATATTCATTTGTACACCGCTCGCTGTC
AGCCTTGTGTCCGCAGCCACCGAAAAAAGCCTTCAAACACGACCACAATC
ACCAAACACGACCACAATCAAACCCCCTTCTCGTCCGGCATGCTGTCATC
GCGCCTTATCCGACACAAAAAGCTGGACAAGGAGCTCCAGCTCCAGCGGC
GGTCGTTCACGCGAGTCCTAAAGTCGGACAGAGACGTTTACGAGGCCAGG
ACTGAAACGGCCGAGGCTAACGCAGAGCGCAGGCAAGCGGCATGCCACTC
TTATGGGATCCTCAAGATTTTCTCCGGGTGTAGCCGCGGGTTTCCGCGTG
CGCTACCATGAACCATAACCTTCCTTCTGTTTGAAGGGCTGGATGCATGC
TCAATGCTACTGTAGTTTGAACCAATAGGCGCGAGAGTCAAGGCAACACC
TCCCCAGGACAGGTGTTAGGTGCCCATGGGACGTTGTACCCATGGGACGT
CGCCCAGCTGTTGAACAAGTTGTGGCAACTGGGAGAGCATACATGCTGTA
GCAGAGGGATTAGAGCCGAAAGCCTGTAGACGTTGCTCCTTTACCACGTG
CCACGTGTCCGTCTGCCACATTGTTGCACGAAACGCGAATCGTAGGCACG
GGTGCGAGTCTTGTCATGCTGCAACACGGCCTCTGAAGCGTGTGCTGCAT
GATACCTTCTGCTCACAATTGTGTTCAGCGCTTGCCGTATGTTCGTTGTG
ATGATCGTAACCTAATGGTGCCCCTGAATAGTCTTGAGCGTCTCGAGTTG
CGACGTTTCGCCGATCCGTGTACAGCCGTCCCTCAGTTAAGGACACAAAT
GATTTTTCGGTGAAACAGCAGTTGCCCTTATGCCGAGCAAGTGTCCTTAG
GATTGATACCCCCCATTATGTTGTACATCTCGAGGGACACCGCGCCCAGG
AAAAGAATATGTCCTTACGGGGTGTCCTTATAAATGGTATATTTTAGCGA
GGGACGACTGTACTGAGGTAGTAACCCGGCCGAATGATCTAATGTGGCTG
TAACCGCAGGGGCCGGGAACTGAAGCGCCTGATGACCTGGGTAGAGAAAG
CGGAGTCAAAATTCGCCGAGGTGATGACAGTCTGCACTAGACGTGCTTCG
AGTTTCTCACTCGCACTAGTACGGTGAACGCACCGTTCGATGTTGCGGAA
GGTTGATCTGAGTATGCATACGTCTTCAGCCACACCTGAGATAGCCGTAT
GTGGCGGTGGTAGATGGTTCAATGGGAACAAGCCTCCGATATGCTAGGCG
TGGCAAAAACAACAGCATCAACATCAACAACATCAAACACCACCGCATTG
AACACTATTCCGCAGGCGCTACGCAAGTTGTCCGCACAGGCGGAGGATTT
GGGAGCAGCTAATCTCGGAGATCTAGAGGGCTTCGCCAAAGACATGTCGG
AAGACGTCTCCAAACTACGACAGGTGAGCGAAGTAGCAGTAATTCTGGGG
GCACTGTACACCCGTTTCTGTTCTTGAATTACCACGTTTAGTCCATGCTG
GCAATCTCAGTTCTAGCACAACACCACTTTGAGCGTCTCTGTGATCCAAC
AAGTGGCATGCGTACGAGGCAGGGTTGGCTCGTGACGGTCTAATGCCGTT
CCTGCCGGCTCGTCGATGAATGAATGCGATTTTTTGCGACGTCCCGACAG
GGTGTGGCAGATTCCATGCGATCGAGGTCGAGATCGAAATCGAAGGGCCG
GTCCTGCGGGCGAGAAGAGGGCACTCAAGAGGAGAACGGCAAGGGTAAAC
CCAAGGAAAAGACGAAAAAGAACAAGACCCGAAAAACGGGGAGCAAGGGT
GATGGTGCCTCGGTTACTGACGCCGACGACTCCAAGGCTTGTTCTAGCGG
TGGAGAACGGCAGGACAAGGGACACGTCGACCATAGTAGTCTCGAGCGGC
CGATGGCGAAGGTCTAAAGCGAGCAGCGAGCAAGTCCTAGGAGGGAACGT
GTCAGAAAGTACATCGGGTTCAGGGTTCAGCTGACCCCATTAGTGCTGCA
CCTTAAGGGAAGAGATCCGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig81:739054..743624-

>mRNA_Ecto-sp6_S_contig81.17400.1 ID=mRNA_Ecto-sp6_S_contig81.17400.1|Name=mRNA_Ecto-sp6_S_contig81.17400.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1053bp|location=Sequence derived from alignment at Ecto-sp6_S_contig81:739054..743624- (Ectocarpus species6 EcLAC_371)
ATGTCGCCGCCGCCAGATACAATAGATTCGGACGAAAGGACCGAGCTCGA
TGCCCTCCGGCTAGAAAATGACACGCTGAGAAGACACCTTGGAAGGCTGG
AAGACAAGGTTCAGAGAGCGGAGGAGAGTGCTAACCTGCAGGCGTACCAG
GTAAAACAGATGGCCCAGCAGTTGCATCATGGGCATTCGCAGGAGACAGA
CGTCCATCAGCAGCAGCAGCAGCAGAGGTTCGCAGAAGGTGCTGCCCCTC
TCGAGGTCCGCCACCTTCACGGCATCCTTCAATGGCTTCACCAAGCAAAG
GCGGACATGGTGGAGAATGACCGAAGCAAAGTCCAGCTGGAGGGCGACGT
GCGGCTGTTGTACAACCTCTTGGAGAAGGCAAAGCGAGAAAGGAAGTCAC
ACGACGGGAAGGTCCAGCGCCTCGAGAAATCCATCGCGACCTCAAACACC
AGAGCAGTGGAGCTGGACAAGGAGCTCCAGCTCCAGCGGCGGTCGTTCAC
GCGAGTCCTAAAGTCGGACAGAGACGTTTACGAGGCCAGGACTGAAACGG
CCGAGGCTAACGCAGAGCGCAGGCAAGCGGCATGCCACTCTTATGGGATC
CTCAAGATTTTCTCCGGGGGCCGGGAACTGAAGCGCCTGATGACCTGGGT
AGAGAAAGCGGAGTCAAAATTCGCCGAGGCGCTACGCAAGTTGTCCGCAC
AGGCGGAGGATTTGGGAGCAGCTAATCTCGGAGATCTAGAGGGCTTCGCC
AAAGACATGTCGGAAGACGTCTCCAAACTACGACAGGGTGTGGCAGATTC
CATGCGATCGAGGTCGAGATCGAAATCGAAGGGCCGGTCCTGCGGGCGAG
AAGAGGGCACTCAAGAGGAGAACGGCAAGGGTAAACCCAAGGAAAAGACG
AAAAAGAACAAGACCCGAAAAACGGGGAGCAAGGGTGATGGTGCCTCGGT
TACTGACGCCGACGACTCCAAGGCTTGTTCTAGCGGTGGAGAACGGCAGG
ACAAGGGACACGTCGACCATAGTAGTCTCGAGCGGCCGATGGCGAAGGTC
TAA
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