mRNA_Ecto-sp6_S_contig8.17111.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17111.1
Unique NamemRNA_Ecto-sp6_S_contig8.17111.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig8.17111.1 vs. uniprot
Match: D7G8D6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D6_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 4.740e-84
Identity = 141/151 (93.38%), Postives = 142/151 (94.04%), Query Frame = 1 
Query:   49 MPEPRVPRFRVPAALVSPASLFLVGGIAYYFSLDKPSEDELNSNIGKEFPDVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFISKPAGTSSSQTAPAAXXXXT--IAPLAENKRPPAPTNKTI 495
            MPEPRVPRFRVPAALVSPASLFLVGGI YYFSLDKPSEDELNSNIGKEFPDVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFISKPAGTSSSQTAP  XXXX   IAPLAENKRPP   +KTI
Sbjct:    1 MPEPRVPRFRVPAALVSPASLFLVGGIVYYFSLDKPSEDELNSNIGKEFPDVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFISKPAGTSSSQTAPXXXXXXXXXIAPLAENKRPPGWGSKTI 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8D6_ECTSI4.740e-8493.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:1763215..1765508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size800
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_004060.1
Cds size525
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17111.1prot_Ecto-sp6_S_contig8.17111.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 1763263..1765281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350420.5056634-UTR-Ecto-sp6_S_contig8:1763214..17632621682350420.5056634-UTR-Ecto-sp6_S_contig8:1763214..1763262Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 1763215..1763262 +
1682350420.5449946-UTR-Ecto-sp6_S_contig8:1765281..17655081682350420.5449946-UTR-Ecto-sp6_S_contig8:1765281..1765508Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 1765282..1765508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350420.514134-CDS-Ecto-sp6_S_contig8:1763262..17634151682350420.514134-CDS-Ecto-sp6_S_contig8:1763262..1763415Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1763263..1763415 +
1682350420.5218246-CDS-Ecto-sp6_S_contig8:1764330..17644081682350420.5218246-CDS-Ecto-sp6_S_contig8:1764330..1764408Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1764331..1764408 +
1682350420.5296085-CDS-Ecto-sp6_S_contig8:1764890..17650861682350420.5296085-CDS-Ecto-sp6_S_contig8:1764890..1765086Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1764891..1765086 +
1682350420.5373566-CDS-Ecto-sp6_S_contig8:1765183..17652811682350420.5373566-CDS-Ecto-sp6_S_contig8:1765183..1765281Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1765184..1765281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17111.1

>prot_Ecto-sp6_S_contig8.17111.1 ID=prot_Ecto-sp6_S_contig8.17111.1|Name=mRNA_Ecto-sp6_S_contig8.17111.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=175bp
MPEPRVPRFRVPAALVSPASLFLVGGIAYYFSLDKPSEDELNSNIGKEFP
DVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHA
TTKDIEEFGFISKPAGTSSSQTAPAATTTTTIAPLAENKRPPAPTNKTIA
IYCGVCATAAFPQMNRVSNFSTRS*
back to top

mRNA from alignment at Ecto-sp6_S_contig8:1763215..1765508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17111.1 ID=mRNA_Ecto-sp6_S_contig8.17111.1|Name=mRNA_Ecto-sp6_S_contig8.17111.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2294bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1763215..1765508+ (Ectocarpus species6 EcLAC_371)
GCAGAGGGGGTGAGTAGGGGCGGCAGGAACGACGGGTGGGAGAGGACGAT
GCCGGAGCCGAGAGTGCCACGATTCAGGGTGCCCGCGGCATTGGTGTCGC
CCGCGTCGCTGTTTCTCGTCGGCGGCATCGCGTACTACTTTTCCTTGGAC
AAGCCTTCCGAAGACGAGCTCAACAGCAACATTGGCAAGGAGTTTCCCGA
CGTGAGTTGTTCGCTTCGTGGATGCCGCTGGCTTGTAGGCTTAGGGTTAC
CACCAATCTCCGGCGCGCGCGCATGGCCGGCCGGCCACTCGGTTGCTGCG
TTTGTGCGAGGGGGCTTTTGTGGTTCTGCCGCGTTTTTGACGCGGAGTAA
CGTATACAGCTATTATAGCGCCCGCACTTACGGACTGGGCCGCCAAGAAA
TTGAGCCTCGAAAAATGCAAGATATGAGAACTTGAGCACCGTGGGTGAGC
GCGGTTAAGAACCTCTACACTAAAACCTGTATAGCGGTCATTGTAGCATA
TCACCATGAACTCCTACTGTAAGAACCCCACCCTCGGCCAATAGTAGAGG
TTCATAGGTTCGGGCGCTAGCTGCAGGCATTTGTTTGGACATTTCGAGCA
GTGAAGCGTTTGTTGCGACAGGGGGGGGAGTGTTTCTCGAAAGCAATGAC
GGTGTGCGTGATCATGGTAATTGGCTGAGAAGCAGACTTCGCGCGGGTCG
CGGCAAAGAGTTCAGTTACCGCGGAAGCCGAACTTGCAAGCCGGAAAGAG
TTCGCACCCCCCCTCCTCCTCTCCCCACACCACCCCGCTGTATTGCAGGC
ACGCAGACGAGGCGATTAGGGTGATGGGATCCAATATCGCCGGGGTCATT
TTTCCAACACGGTGCAACGATTTTGTGGGATGGTTAAAGCGACGTAGAGT
GACAAGCTAAATATTGCCTTGCTTGCAGGGCGTTGTTCCTGTGGGGTAAG
AAGTTGTTCCGGGCACCGAAAGATAAGGGATTCGGGAGGGGACTAAAGCA
ACGTCATTCGACGACGGCATCTCTGTTTTTTTAATATATAATACAGTCAA
GAAGGAAAACGCAGAAGCACAAGAGTCGGCGACTATTTTGAGTTTTCTGT
TTCTTTTGGGCGTCAGGTGGTTCGTGGCCGCCATGAAGTGGACGACCGAA
TGAAGGAGTTCTTCAAACGGGTCAACAACAACGACCCCAGAGAGGTGAGA
GACAATTCGGCCTCAACGTCACGGGCGCGGATGGCGGCGCCGCTGCTGCT
TGCTCAGACTACAACAATTCAACATGTAGAAATGCTTGCTCCTTAAGAAT
CACACCTTTAGTCTCGCCGGCGCTGGCTAGGGCTAGACTATGGTTTTTGA
TTTCGGCTTGTATTATATGGCCGTGAGGTGGGTCCTGATGACCCGACGAT
TTCACTTCAAGGAGGGTGACTCCCCTCGCCACCAGCTCCTCGGAGTTGAC
CCTTCGCGGTTTAGAGTTCAACTCGCACGCCGACGACGTGGAAGCAACCG
CCGCATGACAGATGTAGGTCCTGTGTGGAGAGGGTATGGTCGCTTTTGCG
CTTGTTTTTCCCCGCGAGTTGGTTGACTTCTCTCCGATCCCAGAACCGTT
TCGAACAAGTAAGCCCAATTATGCGACTTGTTTTCGTGATTGAAACCTTC
GCGTACACCCCCGCCGCCTTGAAAAGGAGGAGCGCATGCGAGACCTCCTC
AACAAGGGGAAAGGGTCCCACTACAGCGCCAAGCGTCGGCACGCCACGAC
CAAGGACATCGAGGAGTTCGGCTTCATCTCCAAGCCTGCCGGCACTTCCT
CCTCTCAGACGGCGCCGGCGGCGACAACGACAACAACAATCGCCCCGTTG
GCCGAGAACAAGCGACCACCAGGTTGGGGGTCGAAGACCATCCCGTCGCA
GAGGCCGGCGGTTGAGGAGGAGGGGGGGACGCCCAGACGACGATGGTGGA
GATTCTGGTGATAAATTAGCACCAACGAACAAAACAATCGCTATTTATTG
TGGTGTATGCGCCACGGCTGCTTTTCCCCAAATGAATCGAGTTTCAAATT
TCTCGACGAGAAGCTAGTGCGCGTCCTGCCCCGGTACAGGGAGGGTCACG
CGCGGTTACCGCCAAAAGACGAACACGGCTCGGGATTTCATCGGCAGAGA
GGAAATCATGGTCTGGGATTTCGTGAGCAGAGAGGAAATCACAGTCACTT
CGCGCTAGGGAGATTGCCCCGAACTGACGGTGGGTCTATATTGCGTGGTG
TATTCGTAGATGGTCTGAACCAACTTAGCGTGTGTGTGGAGTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:1763215..1765508+

>mRNA_Ecto-sp6_S_contig8.17111.1 ID=mRNA_Ecto-sp6_S_contig8.17111.1|Name=mRNA_Ecto-sp6_S_contig8.17111.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1763215..1765508+ (Ectocarpus species6 EcLAC_371)
ATGCCGGAGCCGAGAGTGCCACGATTCAGGGTGCCCGCGGCATTGGTGTC
GCCCGCGTCGCTGTTTCTCGTCGGCGGCATCGCGTACTACTTTTCCTTGG
ACAAGCCTTCCGAAGACGAGCTCAACAGCAACATTGGCAAGGAGTTTCCC
GACGTGGTTCGTGGCCGCCATGAAGTGGACGACCGAATGAAGGAGTTCTT
CAAACGGGTCAACAACAACGACCCCAGAGAGGAGGAGCGCATGCGAGACC
TCCTCAACAAGGGGAAAGGGTCCCACTACAGCGCCAAGCGTCGGCACGCC
ACGACCAAGGACATCGAGGAGTTCGGCTTCATCTCCAAGCCTGCCGGCAC
TTCCTCCTCTCAGACGGCGCCGGCGGCGACAACGACAACAACAATCGCCC
CGTTGGCCGAGAACAAGCGACCACCAGCACCAACGAACAAAACAATCGCT
ATTTATTGTGGTGTATGCGCCACGGCTGCTTTTCCCCAAATGAATCGAGT
TTCAAATTTCTCGACGAGAAGCTAG
back to top