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Homology
BLAST of mRNA_Ecto-sp6_S_contig8.17044.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI) HSP 1 Score: 490 bits (1261), Expect = 1.980e-156 Identity = 301/311 (96.78%), Postives = 301/311 (96.78%), Query Frame = 3
Query: 3 LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDGXXXXXXXXGAAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 935
LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDG G AVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER
Sbjct: 894 LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDGGGGDSDDDGPAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1204
BLAST of mRNA_Ecto-sp6_S_contig8.17044.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE) HSP 1 Score: 454 bits (1168), Expect = 6.340e-144 Identity = 244/312 (78.21%), Postives = 250/312 (80.13%), Query Frame = 3
Query: 3 LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPE-LPPSSVSQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDGXXXXXXXXGAAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 935
LDAATACDVLWSFAT+GHPAHSLCEAMARDL++ V L +V + A GYTVSLKRQFD+TKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGV FGGPATDG G AVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER
Sbjct: 804 LDAATACDVLWSFATLGHPAHSLCEAMARDLLSVVERRLDEFTVEEAASALWALGAL----------------------------------GYTVSLKRQFDLTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVFFGGPATDGGGGDSDDDGPAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1081
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1885 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-19_002960.1 |
| Cds size | 891 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350412.8301063-UTR-Ecto-sp6_S_contig8:1083201..1083248 | 1682350412.8301063-UTR-Ecto-sp6_S_contig8:1083201..1083248 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig8 1083202..1083248 + |
| 1682350412.899273-UTR-Ecto-sp6_S_contig8:1087189..1088136 | 1682350412.899273-UTR-Ecto-sp6_S_contig8:1087189..1088136 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig8 1087190..1088136 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682350412.8388374-CDS-Ecto-sp6_S_contig8:1083248..1083305 | 1682350412.8388374-CDS-Ecto-sp6_S_contig8:1083248..1083305 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig8 1083249..1083305 + |
| 1682350412.8472052-CDS-Ecto-sp6_S_contig8:1083916..1084006 | 1682350412.8472052-CDS-Ecto-sp6_S_contig8:1083916..1084006 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig8 1083917..1084006 + |
| 1682350412.8582225-CDS-Ecto-sp6_S_contig8:1084405..1084504 | 1682350412.8582225-CDS-Ecto-sp6_S_contig8:1084405..1084504 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig8 1084406..1084504 + |
| 1682350412.8669643-CDS-Ecto-sp6_S_contig8:1084759..1084933 | 1682350412.8669643-CDS-Ecto-sp6_S_contig8:1084759..1084933 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig8 1084760..1084933 + |
| 1682350412.8753264-CDS-Ecto-sp6_S_contig8:1085351..1085546 | 1682350412.8753264-CDS-Ecto-sp6_S_contig8:1085351..1085546 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig8 1085352..1085546 + |
| 1682350412.8835783-CDS-Ecto-sp6_S_contig8:1086181..1086259 | 1682350412.8835783-CDS-Ecto-sp6_S_contig8:1086181..1086259 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig8 1086182..1086259 + |
| 1682350412.8915076-CDS-Ecto-sp6_S_contig8:1086991..1087189 | 1682350412.8915076-CDS-Ecto-sp6_S_contig8:1086991..1087189 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig8 1086992..1087189 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig8.17044.1 >prot_Ecto-sp6_S_contig8.17044.1 ID=prot_Ecto-sp6_S_contig8.17044.1|Name=mRNA_Ecto-sp6_S_contig8.17044.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=297bp
MGHPAHSLCEAMARDLVNKVPELPPSSVSQLAWAYAKMGHPSAELMERVL SVVERRLDEFTVEEAASALWALGALGYTVSLKRQFDVTKDDLTSLSPSAS ANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALG RLGLGGVLFGGPATDGGGGDSDDDGAAVDGGCELSGLMDKLLGECSKWIE MFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSA ARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER* back to topmRNA from alignment at Ecto-sp6_S_contig8:1083202..1088136+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig8.17044.1 ID=mRNA_Ecto-sp6_S_contig8.17044.1|Name=mRNA_Ecto-sp6_S_contig8.17044.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4935bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1083202..1088136+ (Ectocarpus species6 EcLAC_371) GCCTGGACGCGGCGACGGCGTGCGACGTGCTCTGGTCGTTCGCGACGATG
GGCCACCCGGCCCACAGCCTGTGCGAGGCGATGGCCAGGGACCTCGTCAA
CAAGGCGAGGCAAAGAACAAAATGATACAAGATGCACGCCATCTTGGTTT
GTCCCGCATCTCGCCGTCGTTGCTTGGGAATCGCGAGCCGCTGCTGAGAT
TGGAGGTGTTGGGTTGCTTGTTATAACGTCGAGGAAAAAAGGGGGCTGGG
TTGCCTGAGAGAGAAGGGCGGCAGGCAACGGGTAAAAGGAGGATATCGTT
GATTCTGTAGCTTTTTTGCCGGTGAAGTTCGATGGGGTGCGCGGGGTCTC
ATCCGTGTTGGTTTGGAGACAGCCGGAAATTTATTGCCTGGTTGTGACGT
ACATCTGACCGAGAGGGAACGGGGCACGAAGGGAGAAAATAAAAAACAAG
AACACGGAACCACGAAAGGGAGGGAACAAAACATGGAATCGTGTCTATTG
CTGATGCGACTGGCGTCTCGCTCTCAAAGTTTGTTTTATCGTGCTGGCGG
CCCCCTCCATTTTTTTTTTTAATGCTTCTGAGCACTGCTCGCATGAAGCT
CGCTGCAGAGAGGAGCGGCGCGTTTTTTTTTCGTTGCCCCTTGTTGATCG
AGCTTTCGGATGTGCGGCGGCGTGTGCGCCCGCCCACCCGTCCCGCGCAT
GCATGCACACGCCAGGTGCCGGAGCTTCCGCCTTCGTCGGTGTCGCAGCT
GGCGTGGGCATACGCCAAGATGGGGCATCCTTCCGCGGAGCTCATGGAAC
GCGTGGTGGGCTATGAAGGGCACGGGGGTTTGGGGGACTGCATATACGTA
ACAGGCACACCTGTAGAGTATGAAACACCGGAGGGTGGGGACGAATGTAA
AACACAGGCACATCTGTACAAAGATTGCTTTTTTCTGGTGCTTGGCTGTG
GTTTTGTAGCTCTGCATGACGCGTGTTGCGTTGCGCTACGCAAGTATGCA
CACGAGTCGTCCCGTTCTGTGGTGCGTGAGTCGGTCCCCCACCCATACTT
GGTGTTCCCCTGGCTTTCGCTTGCACTTCCCTCCGGTCGGTGGTTCGCCC
AACCCGCTCTCTCGCACTCCTCGCTTGCAATTCCGCCGCACGTATCGACG
GACGACGGTCTTGGTTGGTTGGTTGCTTTGCTGCGTGACGCGGTGGGGTC
TCAGCTGAGCGTGGTGGAGAGAAGGCTGGACGAGTTTACCGTGGAGGAAG
CGGCGAGCGCGCTCTGGGCTCTTGGTGCCCTCGGGTACACGGTGTCCCTC
AAGGTATGAAAATGTACCCTGTTCCGTGAGACCGCCGTCGGATACGGGGG
GGCTCTCTCTACGCGCCCTCGCAGGCCTTCCTGCAGATGCTGGTTGGATG
AAGCACGAAAGCGCTGCAAACAGCTACCACTCTGTTCACTAATATTCGAG
CCATTCGGATACAAGCCCGAATACCGCAATGGTCCCTATATTTCCAACCG
GAGTGGGATTAGCGATCACACTCCTCTTTCTCCCTTCGAATTTTTGGCAT
CGTAACAGCGCCAGTTCGACGTCACGAAGGACGACCTCACCTCGCTCAGC
CCGTCCGCATCAGCGAACCTGTTGTGGGGCTTGGTCAAGACGGAGGCGGC
GTTCGCCGACGGCTTCGACCGGGAGTGCCTCGAGGCTGTCGCGGCAGACA
TGGGACCCAAGCTGCTCAGCTTCTCGCCCAGGGTAAAGCAAAGCTCACCG
ACGAGGCTGTGTTGAGCTTTTTCGGGGTGTGGGAGAGGTCGTAGAGAGAG
ATTCGAATACACAAGAATACGGCCCCCCCGTCCCCCAGCTGAGGAGCGAC
GTGTCCCACCCCCCACTCGTTCCGTGTGGGACCCCAACAATTCGTTCAGC
TGCGCGAACTCCGGTGCGCATTATACCGCTCTCTATTCATTATTGATGCC
GGCGTACCGCACCAAGCGTCTCCAAAACTCCGTTCTCATTCCTCTTGCGT
TGGCTTTGAGTCGATGACGACTCCGTCCCGGTGGAGGAAAGGGGGCCTCT
CCGGACACATCTATCACGCCACCCTCCCAAGCCCATCACGCTCTCACGCA
ACCCAGCGCTGCCGTCCTCTCTCTTTATACTTCCATTCGGCTCCGCGCAG
GAGCTTTGCCGCACTGCTTGGGCCTTGGGGCGGCTGGGTCTGGGAGGAGT
TTTGTTCGGGGGCCCCGCGACGGACGGCGGGGGGGGAGATTCGGACGATG
ATGGCGCTGCGGTAGATGGGGGGTGCGAGTTGTCGGGGCTGATGGACAAG
CTCTTGGGGGAGTGCTCGAAGTGGATCGAGATGTTCACGCCGCAGGTGCC
GCACTTACCCCAAGAGTAGCTTCATAGGCCTTGGGGTTGGCGTCTGTGTA
TGGGACTGTTGGCAACAGCAGCGGTGTTCTTTGTGGGGGGACTAGGAATA
ACAGAGTTTTGTTTTTGTTTTTCTAGGCCGTTGAGAAGATGCCGGTGCAG
ATACACAAGCCCCGGGGAAGGATTGGAGTCTCTGCCGGGATGCATGTTGA
CGCGGCAGGTGCAAGCAGAGGCAGCGAACCTTGTTGGTACCATATGGACG
TGTTGTTCCGTTGTAGACCTTTCTTACGGAGGTTTTCATACAGTGATGTC
CTTCGACTCTCCCCCATGTCACCGTGGATCAGTTGCGAAGAGGAATTTCA
CACCCAACGCTTGCACCAGCACCAACCTCGCCGCAAGGCGAGAATTCGAC
GTACGTGCCACAATCTAGCCCCGCCCACGCGCTCGCTCGCCCGGTGCCGG
TGCAGCAAACAGCGTGGCCTGTTCAGGAGGGTACGCAAATGCGACGGCCC
TCCGTCTCTGCAGTCCGCCGTTCCCCGATGGTCAATTCTGTATAGACATG
TTGAACTAGTTGGAGCGCTCCTGACCTCCCCCCACTCGCGCGTATGCCAC
CCCCGTGCACGCCCGCAAACGCCCGCTTAGGAATTGGAAACCTTGCTGTG
GGCCGTCTGCCGTCTGGAGCACAGAGCGGACGACCTGGTGGCCGACATGG
CGGCGGAGGTACGCGCAACCAATCACTTGTTTTGTGTTCTGAAAAGTTTT
CTCGCGCAATGAGAGTTGATCGGTGCAACCAAGAGGCGTTTTTGAGATAT
GGGCTATACCATTTCACTGGGCTTGTCGGTAGAAAGTGTTTCGTTTGTTT
GTTTCACCTTTCCTTCTGTTTTTGGGTCTTTAAGGCTAGAAATATTTTCC
GCTGATACGATGAGTTCTTGATGAACGTGCCCAAAGGGCATTTTCACTCC
TGCTACCTGTCCCAGGAAAGTGAATTCTCAAGTGTCTTTTGCGCGGGACC
CTTCTGTTTTGGCGCCGTTCGGGGTTTTGCGTTTTTTGTCGTTTATTGTT
GGAGTTGATGTCTTCCCGATCGGTGTCCGGAGCCCAGTCTTGAAGGAAGT
TTTCGTGAGAACGATCTGCACCTCTGTACCAAGATCGGTTGCTATGCGAA
TCTCTCCTCTTCGTAATACCGCCCGCACGGATGTAGCAGTCAGGTGAATT
TTGTCACCATGGAAGGCGTTTCTGGAATATCCATGGGTATGTAGCTCCTC
CTTGACACCCCTTTTTCTGCCCAGCTAAATTTTGCTCTCTTATTTCACAA
AAAAAGTTTGTGTGTATGTTGCGTCCCCAATACTGATAATTATTTAATAC
CCGTGTATCAGAAACAAAGCACACCCAATACACTGCATTGTCAGTTCTAC
ACGGCCTCAACCCTTATGAATAAACATGTACGTCCGGCAGGGAAAACGGC
GCCAGGAGGAACTGCCGAGCCTGCTGAAGCAGTCGGGGCCCTCGGCAGCG
CGCGACGCGGCCTTTCACCTGGGGGCATTTCGACACCTTCTCGCCAAGTA
CAGGGGGGTAGACTTCGACGGCCGGAGGGCGAGGGGGAGGTATCGCCGGG
GCAAGAGCATGATTTCTCGCATGTTTCGAGAGAGATGAATAAGTTCACCA
TTTCGAGAGAGAGACGAAATAGTTGTGCTTGGTGGAATGTGGATTTAGTG
TTGTCGAGTGTTGGTTGTTGTGTGGTGGCTGGTGACAAGAAGGCGTGTCG
CGATGCCCGTTGACTGTGACGTTTTCAAGTTGTGGGAACATGGGCTGTTG
GGGTTTTCGGGATTGATTTGGTCGCCGACCGCATGTCGCGAACAAGACCG
AAACTGTGGATGTTCAATATCACTACTTACGTTTTACACTGTTTCATGTG
CTCCTTTGCCGTGCTTGTTCGGAGATGCCGGTAGCTCTCCCCGTGGCGCA
GTTGGTTCTGCTCGTTCCCTGTTACTGTCAGCTCTCGCGGTCACACATGT
CTGATGCGGGTCGGCCGCAGACCCCGTCTCCGGACGGAAACATGTCATCA
ACATCCGGATGTCTTGTGCGACTGCTGTCGTATTTCACTCTCTCATTGCT
GGTATGGCGTTTTACCACCGTTAAGCCACGCCACAGAGTAGGCAGAATTC
GTGAGGAACCTTGGGGGGTCGGCAAACACCCCCGACAGGGACGTGGGCAC
GGTGAGGCCGTTGCGTTGTTGGCAGCCCCGATGTTGGTCACTCACTTTCC
CTCGCGCCAATATGTGGATATTCTGAACACCACAAGGGGAGAAAGCGAGG
AGGTGTGAAATCCGATGTTGTCTTGGTGTTACTCGCTTGAAGAGTTTTGG
ACGTGGAGCAGCGTTAGTCTAACGTGTGCAGTCTTAGTCTTGCCGGCACA
TTTTGCGAACAAACCTGGAAGGAGTTTTAAGAATATCCGGTGTATGAACT
GATCTGTAACGATACGTTTTGCAGAAATCTTCACCTACAACTGCTTCTTG
AGGCGGTGGTTACACGTTGCCTAGAGAGTGGTCGCTTGCAGCACAGTATC
GTTTCGGCGACAAGAAGCCGGGGGAGGAACCTGTG back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig8:1083202..1088136+ >mRNA_Ecto-sp6_S_contig8.17044.1 ID=mRNA_Ecto-sp6_S_contig8.17044.1|Name=mRNA_Ecto-sp6_S_contig8.17044.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1083202..1088136+ (Ectocarpus species6 EcLAC_371) ATGGGCCACCCGGCCCACAGCCTGTGCGAGGCGATGGCCAGGGACCTCGT CAACAAGGTGCCGGAGCTTCCGCCTTCGTCGGTGTCGCAGCTGGCGTGGG CATACGCCAAGATGGGGCATCCTTCCGCGGAGCTCATGGAACGCGTGCTG AGCGTGGTGGAGAGAAGGCTGGACGAGTTTACCGTGGAGGAAGCGGCGAG CGCGCTCTGGGCTCTTGGTGCCCTCGGGTACACGGTGTCCCTCAAGCGCC AGTTCGACGTCACGAAGGACGACCTCACCTCGCTCAGCCCGTCCGCATCA GCGAACCTGTTGTGGGGCTTGGTCAAGACGGAGGCGGCGTTCGCCGACGG CTTCGACCGGGAGTGCCTCGAGGCTGTCGCGGCAGACATGGGACCCAAGC TGCTCAGCTTCTCGCCCAGGGAGCTTTGCCGCACTGCTTGGGCCTTGGGG CGGCTGGGTCTGGGAGGAGTTTTGTTCGGGGGCCCCGCGACGGACGGCGG GGGGGGAGATTCGGACGATGATGGCGCTGCGGTAGATGGGGGGTGCGAGT TGTCGGGGCTGATGGACAAGCTCTTGGGGGAGTGCTCGAAGTGGATCGAG ATGTTCACGCCGCAGGAATTGGAAACCTTGCTGTGGGCCGTCTGCCGTCT GGAGCACAGAGCGGACGACCTGGTGGCCGACATGGCGGCGGAGGGAAAAC GGCGCCAGGAGGAACTGCCGAGCCTGCTGAAGCAGTCGGGGCCCTCGGCA GCGCGCGACGCGGCCTTTCACCTGGGGGCATTTCGACACCTTCTCGCCAA GTACAGGGGGGTAGACTTCGACGGCCGGAGGGCGAGGGGGAGGTATCGCC GGGGCAAGAGCATGATTTCTCGCATGTTTCGAGAGAGATGA back to top
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