mRNA_Ecto-sp6_S_contig8.17044.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17044.1
Unique NamemRNA_Ecto-sp6_S_contig8.17044.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig8.17044.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 1.980e-156
Identity = 301/311 (96.78%), Postives = 301/311 (96.78%), Query Frame = 3
Query:    3 LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDGXXXXXXXXGAAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 935
            LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDG        G AVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER
Sbjct:  894 LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDGGGGDSDDDGPAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1204          
BLAST of mRNA_Ecto-sp6_S_contig8.17044.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE)

HSP 1 Score: 454 bits (1168), Expect = 6.340e-144
Identity = 244/312 (78.21%), Postives = 250/312 (80.13%), Query Frame = 3
Query:    3 LDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPE-LPPSSVSQLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYTVSLKRQFDVTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVLFGGPATDGXXXXXXXXGAAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 935
            LDAATACDVLWSFAT+GHPAHSLCEAMARDL++ V   L   +V + A                                           GYTVSLKRQFD+TKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGV FGGPATDG        G AVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER
Sbjct:  804 LDAATACDVLWSFATLGHPAHSLCEAMARDLLSVVERRLDEFTVEEAASALWALGAL----------------------------------GYTVSLKRQFDLTKDDLTSLSPSASANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALGRLGLGGVFFGGPATDGGGGDSDDDGPAVDGGCELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1081          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYY5_ECTSI1.980e-15696.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR07_9PHAE6.340e-14478.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:1083202..1088136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1885
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002960.1
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17044.1prot_Ecto-sp6_S_contig8.17044.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 1083249..1087189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350412.8301063-UTR-Ecto-sp6_S_contig8:1083201..10832481682350412.8301063-UTR-Ecto-sp6_S_contig8:1083201..1083248Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 1083202..1083248 +
1682350412.899273-UTR-Ecto-sp6_S_contig8:1087189..10881361682350412.899273-UTR-Ecto-sp6_S_contig8:1087189..1088136Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 1087190..1088136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350412.8388374-CDS-Ecto-sp6_S_contig8:1083248..10833051682350412.8388374-CDS-Ecto-sp6_S_contig8:1083248..1083305Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1083249..1083305 +
1682350412.8472052-CDS-Ecto-sp6_S_contig8:1083916..10840061682350412.8472052-CDS-Ecto-sp6_S_contig8:1083916..1084006Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1083917..1084006 +
1682350412.8582225-CDS-Ecto-sp6_S_contig8:1084405..10845041682350412.8582225-CDS-Ecto-sp6_S_contig8:1084405..1084504Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1084406..1084504 +
1682350412.8669643-CDS-Ecto-sp6_S_contig8:1084759..10849331682350412.8669643-CDS-Ecto-sp6_S_contig8:1084759..1084933Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1084760..1084933 +
1682350412.8753264-CDS-Ecto-sp6_S_contig8:1085351..10855461682350412.8753264-CDS-Ecto-sp6_S_contig8:1085351..1085546Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1085352..1085546 +
1682350412.8835783-CDS-Ecto-sp6_S_contig8:1086181..10862591682350412.8835783-CDS-Ecto-sp6_S_contig8:1086181..1086259Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1086182..1086259 +
1682350412.8915076-CDS-Ecto-sp6_S_contig8:1086991..10871891682350412.8915076-CDS-Ecto-sp6_S_contig8:1086991..1087189Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 1086992..1087189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17044.1

>prot_Ecto-sp6_S_contig8.17044.1 ID=prot_Ecto-sp6_S_contig8.17044.1|Name=mRNA_Ecto-sp6_S_contig8.17044.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=297bp
MGHPAHSLCEAMARDLVNKVPELPPSSVSQLAWAYAKMGHPSAELMERVL
SVVERRLDEFTVEEAASALWALGALGYTVSLKRQFDVTKDDLTSLSPSAS
ANLLWGLVKTEAAFADGFDRECLEAVAADMGPKLLSFSPRELCRTAWALG
RLGLGGVLFGGPATDGGGGDSDDDGAAVDGGCELSGLMDKLLGECSKWIE
MFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSA
ARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER*
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mRNA from alignment at Ecto-sp6_S_contig8:1083202..1088136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17044.1 ID=mRNA_Ecto-sp6_S_contig8.17044.1|Name=mRNA_Ecto-sp6_S_contig8.17044.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4935bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1083202..1088136+ (Ectocarpus species6 EcLAC_371)
GCCTGGACGCGGCGACGGCGTGCGACGTGCTCTGGTCGTTCGCGACGATG GGCCACCCGGCCCACAGCCTGTGCGAGGCGATGGCCAGGGACCTCGTCAA CAAGGCGAGGCAAAGAACAAAATGATACAAGATGCACGCCATCTTGGTTT GTCCCGCATCTCGCCGTCGTTGCTTGGGAATCGCGAGCCGCTGCTGAGAT TGGAGGTGTTGGGTTGCTTGTTATAACGTCGAGGAAAAAAGGGGGCTGGG TTGCCTGAGAGAGAAGGGCGGCAGGCAACGGGTAAAAGGAGGATATCGTT GATTCTGTAGCTTTTTTGCCGGTGAAGTTCGATGGGGTGCGCGGGGTCTC ATCCGTGTTGGTTTGGAGACAGCCGGAAATTTATTGCCTGGTTGTGACGT ACATCTGACCGAGAGGGAACGGGGCACGAAGGGAGAAAATAAAAAACAAG AACACGGAACCACGAAAGGGAGGGAACAAAACATGGAATCGTGTCTATTG CTGATGCGACTGGCGTCTCGCTCTCAAAGTTTGTTTTATCGTGCTGGCGG CCCCCTCCATTTTTTTTTTTAATGCTTCTGAGCACTGCTCGCATGAAGCT CGCTGCAGAGAGGAGCGGCGCGTTTTTTTTTCGTTGCCCCTTGTTGATCG AGCTTTCGGATGTGCGGCGGCGTGTGCGCCCGCCCACCCGTCCCGCGCAT GCATGCACACGCCAGGTGCCGGAGCTTCCGCCTTCGTCGGTGTCGCAGCT GGCGTGGGCATACGCCAAGATGGGGCATCCTTCCGCGGAGCTCATGGAAC GCGTGGTGGGCTATGAAGGGCACGGGGGTTTGGGGGACTGCATATACGTA ACAGGCACACCTGTAGAGTATGAAACACCGGAGGGTGGGGACGAATGTAA AACACAGGCACATCTGTACAAAGATTGCTTTTTTCTGGTGCTTGGCTGTG GTTTTGTAGCTCTGCATGACGCGTGTTGCGTTGCGCTACGCAAGTATGCA CACGAGTCGTCCCGTTCTGTGGTGCGTGAGTCGGTCCCCCACCCATACTT GGTGTTCCCCTGGCTTTCGCTTGCACTTCCCTCCGGTCGGTGGTTCGCCC AACCCGCTCTCTCGCACTCCTCGCTTGCAATTCCGCCGCACGTATCGACG GACGACGGTCTTGGTTGGTTGGTTGCTTTGCTGCGTGACGCGGTGGGGTC TCAGCTGAGCGTGGTGGAGAGAAGGCTGGACGAGTTTACCGTGGAGGAAG CGGCGAGCGCGCTCTGGGCTCTTGGTGCCCTCGGGTACACGGTGTCCCTC AAGGTATGAAAATGTACCCTGTTCCGTGAGACCGCCGTCGGATACGGGGG GGCTCTCTCTACGCGCCCTCGCAGGCCTTCCTGCAGATGCTGGTTGGATG AAGCACGAAAGCGCTGCAAACAGCTACCACTCTGTTCACTAATATTCGAG CCATTCGGATACAAGCCCGAATACCGCAATGGTCCCTATATTTCCAACCG GAGTGGGATTAGCGATCACACTCCTCTTTCTCCCTTCGAATTTTTGGCAT CGTAACAGCGCCAGTTCGACGTCACGAAGGACGACCTCACCTCGCTCAGC CCGTCCGCATCAGCGAACCTGTTGTGGGGCTTGGTCAAGACGGAGGCGGC GTTCGCCGACGGCTTCGACCGGGAGTGCCTCGAGGCTGTCGCGGCAGACA TGGGACCCAAGCTGCTCAGCTTCTCGCCCAGGGTAAAGCAAAGCTCACCG ACGAGGCTGTGTTGAGCTTTTTCGGGGTGTGGGAGAGGTCGTAGAGAGAG ATTCGAATACACAAGAATACGGCCCCCCCGTCCCCCAGCTGAGGAGCGAC GTGTCCCACCCCCCACTCGTTCCGTGTGGGACCCCAACAATTCGTTCAGC TGCGCGAACTCCGGTGCGCATTATACCGCTCTCTATTCATTATTGATGCC GGCGTACCGCACCAAGCGTCTCCAAAACTCCGTTCTCATTCCTCTTGCGT TGGCTTTGAGTCGATGACGACTCCGTCCCGGTGGAGGAAAGGGGGCCTCT CCGGACACATCTATCACGCCACCCTCCCAAGCCCATCACGCTCTCACGCA ACCCAGCGCTGCCGTCCTCTCTCTTTATACTTCCATTCGGCTCCGCGCAG GAGCTTTGCCGCACTGCTTGGGCCTTGGGGCGGCTGGGTCTGGGAGGAGT TTTGTTCGGGGGCCCCGCGACGGACGGCGGGGGGGGAGATTCGGACGATG ATGGCGCTGCGGTAGATGGGGGGTGCGAGTTGTCGGGGCTGATGGACAAG CTCTTGGGGGAGTGCTCGAAGTGGATCGAGATGTTCACGCCGCAGGTGCC GCACTTACCCCAAGAGTAGCTTCATAGGCCTTGGGGTTGGCGTCTGTGTA TGGGACTGTTGGCAACAGCAGCGGTGTTCTTTGTGGGGGGACTAGGAATA ACAGAGTTTTGTTTTTGTTTTTCTAGGCCGTTGAGAAGATGCCGGTGCAG ATACACAAGCCCCGGGGAAGGATTGGAGTCTCTGCCGGGATGCATGTTGA CGCGGCAGGTGCAAGCAGAGGCAGCGAACCTTGTTGGTACCATATGGACG TGTTGTTCCGTTGTAGACCTTTCTTACGGAGGTTTTCATACAGTGATGTC CTTCGACTCTCCCCCATGTCACCGTGGATCAGTTGCGAAGAGGAATTTCA CACCCAACGCTTGCACCAGCACCAACCTCGCCGCAAGGCGAGAATTCGAC GTACGTGCCACAATCTAGCCCCGCCCACGCGCTCGCTCGCCCGGTGCCGG TGCAGCAAACAGCGTGGCCTGTTCAGGAGGGTACGCAAATGCGACGGCCC TCCGTCTCTGCAGTCCGCCGTTCCCCGATGGTCAATTCTGTATAGACATG TTGAACTAGTTGGAGCGCTCCTGACCTCCCCCCACTCGCGCGTATGCCAC CCCCGTGCACGCCCGCAAACGCCCGCTTAGGAATTGGAAACCTTGCTGTG GGCCGTCTGCCGTCTGGAGCACAGAGCGGACGACCTGGTGGCCGACATGG CGGCGGAGGTACGCGCAACCAATCACTTGTTTTGTGTTCTGAAAAGTTTT CTCGCGCAATGAGAGTTGATCGGTGCAACCAAGAGGCGTTTTTGAGATAT GGGCTATACCATTTCACTGGGCTTGTCGGTAGAAAGTGTTTCGTTTGTTT GTTTCACCTTTCCTTCTGTTTTTGGGTCTTTAAGGCTAGAAATATTTTCC GCTGATACGATGAGTTCTTGATGAACGTGCCCAAAGGGCATTTTCACTCC TGCTACCTGTCCCAGGAAAGTGAATTCTCAAGTGTCTTTTGCGCGGGACC CTTCTGTTTTGGCGCCGTTCGGGGTTTTGCGTTTTTTGTCGTTTATTGTT GGAGTTGATGTCTTCCCGATCGGTGTCCGGAGCCCAGTCTTGAAGGAAGT TTTCGTGAGAACGATCTGCACCTCTGTACCAAGATCGGTTGCTATGCGAA TCTCTCCTCTTCGTAATACCGCCCGCACGGATGTAGCAGTCAGGTGAATT TTGTCACCATGGAAGGCGTTTCTGGAATATCCATGGGTATGTAGCTCCTC CTTGACACCCCTTTTTCTGCCCAGCTAAATTTTGCTCTCTTATTTCACAA AAAAAGTTTGTGTGTATGTTGCGTCCCCAATACTGATAATTATTTAATAC CCGTGTATCAGAAACAAAGCACACCCAATACACTGCATTGTCAGTTCTAC ACGGCCTCAACCCTTATGAATAAACATGTACGTCCGGCAGGGAAAACGGC GCCAGGAGGAACTGCCGAGCCTGCTGAAGCAGTCGGGGCCCTCGGCAGCG CGCGACGCGGCCTTTCACCTGGGGGCATTTCGACACCTTCTCGCCAAGTA CAGGGGGGTAGACTTCGACGGCCGGAGGGCGAGGGGGAGGTATCGCCGGG GCAAGAGCATGATTTCTCGCATGTTTCGAGAGAGATGAATAAGTTCACCA TTTCGAGAGAGAGACGAAATAGTTGTGCTTGGTGGAATGTGGATTTAGTG TTGTCGAGTGTTGGTTGTTGTGTGGTGGCTGGTGACAAGAAGGCGTGTCG CGATGCCCGTTGACTGTGACGTTTTCAAGTTGTGGGAACATGGGCTGTTG GGGTTTTCGGGATTGATTTGGTCGCCGACCGCATGTCGCGAACAAGACCG AAACTGTGGATGTTCAATATCACTACTTACGTTTTACACTGTTTCATGTG CTCCTTTGCCGTGCTTGTTCGGAGATGCCGGTAGCTCTCCCCGTGGCGCA GTTGGTTCTGCTCGTTCCCTGTTACTGTCAGCTCTCGCGGTCACACATGT CTGATGCGGGTCGGCCGCAGACCCCGTCTCCGGACGGAAACATGTCATCA ACATCCGGATGTCTTGTGCGACTGCTGTCGTATTTCACTCTCTCATTGCT GGTATGGCGTTTTACCACCGTTAAGCCACGCCACAGAGTAGGCAGAATTC GTGAGGAACCTTGGGGGGTCGGCAAACACCCCCGACAGGGACGTGGGCAC GGTGAGGCCGTTGCGTTGTTGGCAGCCCCGATGTTGGTCACTCACTTTCC CTCGCGCCAATATGTGGATATTCTGAACACCACAAGGGGAGAAAGCGAGG AGGTGTGAAATCCGATGTTGTCTTGGTGTTACTCGCTTGAAGAGTTTTGG ACGTGGAGCAGCGTTAGTCTAACGTGTGCAGTCTTAGTCTTGCCGGCACA TTTTGCGAACAAACCTGGAAGGAGTTTTAAGAATATCCGGTGTATGAACT GATCTGTAACGATACGTTTTGCAGAAATCTTCACCTACAACTGCTTCTTG AGGCGGTGGTTACACGTTGCCTAGAGAGTGGTCGCTTGCAGCACAGTATC GTTTCGGCGACAAGAAGCCGGGGGAGGAACCTGTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:1083202..1088136+

>mRNA_Ecto-sp6_S_contig8.17044.1 ID=mRNA_Ecto-sp6_S_contig8.17044.1|Name=mRNA_Ecto-sp6_S_contig8.17044.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:1083202..1088136+ (Ectocarpus species6 EcLAC_371)
ATGGGCCACCCGGCCCACAGCCTGTGCGAGGCGATGGCCAGGGACCTCGT
CAACAAGGTGCCGGAGCTTCCGCCTTCGTCGGTGTCGCAGCTGGCGTGGG
CATACGCCAAGATGGGGCATCCTTCCGCGGAGCTCATGGAACGCGTGCTG
AGCGTGGTGGAGAGAAGGCTGGACGAGTTTACCGTGGAGGAAGCGGCGAG
CGCGCTCTGGGCTCTTGGTGCCCTCGGGTACACGGTGTCCCTCAAGCGCC
AGTTCGACGTCACGAAGGACGACCTCACCTCGCTCAGCCCGTCCGCATCA
GCGAACCTGTTGTGGGGCTTGGTCAAGACGGAGGCGGCGTTCGCCGACGG
CTTCGACCGGGAGTGCCTCGAGGCTGTCGCGGCAGACATGGGACCCAAGC
TGCTCAGCTTCTCGCCCAGGGAGCTTTGCCGCACTGCTTGGGCCTTGGGG
CGGCTGGGTCTGGGAGGAGTTTTGTTCGGGGGCCCCGCGACGGACGGCGG
GGGGGGAGATTCGGACGATGATGGCGCTGCGGTAGATGGGGGGTGCGAGT
TGTCGGGGCTGATGGACAAGCTCTTGGGGGAGTGCTCGAAGTGGATCGAG
ATGTTCACGCCGCAGGAATTGGAAACCTTGCTGTGGGCCGTCTGCCGTCT
GGAGCACAGAGCGGACGACCTGGTGGCCGACATGGCGGCGGAGGGAAAAC
GGCGCCAGGAGGAACTGCCGAGCCTGCTGAAGCAGTCGGGGCCCTCGGCA
GCGCGCGACGCGGCCTTTCACCTGGGGGCATTTCGACACCTTCTCGCCAA
GTACAGGGGGGTAGACTTCGACGGCCGGAGGGCGAGGGGGAGGTATCGCC
GGGGCAAGAGCATGATTTCTCGCATGTTTCGAGAGAGATGA
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