mRNA_Ecto-sp6_S_contig8.17032.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17032.1
Unique NamemRNA_Ecto-sp6_S_contig8.17032.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: D7FYX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX5_ECTSI)

HSP 1 Score: 673 bits (1737), Expect = 1.240e-237
Identity = 351/358 (98.04%), Postives = 352/358 (98.32%), Query Frame = 3
Query:   90 MGVSRRCSALAAFVALAAVSSECQAFINCFLRAGERTPPSAATTSMTSFRHSSSGWCGTARAKDCGALLMSEVAEDYPSDTGDDRFAGGAGTAEQERLAFTEKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGTETKLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNEQGQVFVFAREDDGELR 1163
            MGVSRRCSALAAFVALAAVSSECQAFINCFLRAGERTPPS ATTS TSFRHSSSGWC  ARAKDCGALLMSEVAEDYPSDTGDDRFAGGAGTAEQERLAFTEKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGD FDGSTVA TIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGTETKLRVAKTQVRKSALGRLLKPLFNLD+IEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNEQGQVFVFAREDDGELR
Sbjct:    1 MGVSRRCSALAAFVALAAVSSECQAFINCFLRAGERTPPSEATTSTTSFRHSSSGWCRMARAKDCGALLMSEVAEDYPSDTGDDRFAGGAGTAEQERLAFTEKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDSFDGSTVAATIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGTETKLRVAKTQVRKSALGRLLKPLFNLDNIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNEQGQVFVFAREDDGELR 358          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A0G4FU97_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FU97_VITBC)

HSP 1 Score: 125 bits (314), Expect = 1.910e-28
Identity = 93/260 (35.77%), Postives = 134/260 (51.54%), Query Frame = 3
Query:  384 AFTEKDTPEVAQLKLDLLRIAALTGRGQLATP-AERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGTETK-----LRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNEQ-GQVFVFAR 1142
            A +  ++  +  LK++LL  AA +GRGQ A   A R   + ++ +LE   P    ATS  L G W LVYASED TRSSPFFWAFRKA EGI+ P         F    +A ++F +TD LP KS+GE+ Q I    + ++   F      +  R       F    S MTT   +    G E +     + + KT+V  S + RLL   F   D  +++ + L  +K+GS+ V    ++LD  LR+ RN++ G VF + R
Sbjct:   20 AVSAPESNPLEDLKIELLESAAASGRGQFALEGASRATFDSILADLEALNPTPAPATSPLLKGTWRLVYASEDVTRSSPFFWAFRKALEGIRDPL------RTFGSDQLAESLFGLTDRLPFKSIGESRQRIEGSPMPNQ--RFRPERLTNQVR----VGVFGLGESKMTTECSVAPQEGPEARDDVLNVTIEKTKVLDSTISRLLP--FLDGDSAYESKSSLENIKQGSSVVEKRISFLDEDLRIVRNDRDGHVFAYWR 265          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A7S4FYH2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FYH2_9EUGL)

HSP 1 Score: 124 bits (312), Expect = 3.620e-28
Identity = 96/270 (35.56%), Postives = 139/270 (51.48%), Query Frame = 3
Query:  339 DRFAGGAGTAEQERLAFTEKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPG--KSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGTETKLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNEQGQVFVFAR 1142
            D   GGA T           +      L+  LL +AA   RGQ   P +  +++++I +LE+   +    T+  L G+W LV+ASED TRSSPFFWAFR+A              D  D       ++AITDS+PG  K +G AVQ I+  E   E       S  S    +  P T     SVM TTS I D   ++  L+V +T+VR++ L     PL++   + F +   L   ++G++EV MTT Y+D L+R+S+N+QGQ FV+ R
Sbjct:   32 DLCTGGASTRLAMATVSGAGEEVTTQSLRGRLLEMAARADRGQTENPQDNTQIKEIIDKLELA--MIGQGTTARLDGKWELVWASEDVTRSSPFFWAFRQAYP------------DNAD------QVYAITDSIPGQLKEIGRAVQNISGAEGPGE------GSLESRVVIRALPGTPLPLESVMITTSAIVDRNRSQVTLKVDETKVRETTL-----PLWD-KTLPFPSGVALELARQGASEVVMTTLYIDELIRISKNDQGQTFVWTR 269          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A7S0TMF4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TMF4_HEMAN)

HSP 1 Score: 119 bits (298), Expect = 6.250e-26
Identity = 91/272 (33.46%), Postives = 132/272 (48.53%), Query Frame = 3
Query:  366 AEQERLAFTEKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNT-----------FPSFRSVMTTTSEITDAAGTETKLRVAKTQVRKSALGRL--LKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNEQGQVFVFAR 1142
            +E E +       P     + ++L++ AL+ RGQ AT AER  ++  I  L   T       S+ L G W LVYASE  TRSSPFFWAFRKAT+    P             +++  +FAITD +P  S+G A QTI+                G++ RG    ++            P     +TT+S + D    + +L V  T+V+ S  G +  L P F  + ++F +   L  +K GS+ V MT  Y+   +RV+RNE+GQVFV  R
Sbjct:   63 SEDEPILAKVDRAPASQGSEAEVLKLCALSNRGQGATLAERDDIDAAISRL---TASSSGCDSSLLNGDWRLVYASEAVTRSSPFFWAFRKATKSTMQPLP-------LLPPSLSEALFAITDGIPFASIGRATQTIS--------------GMGAEGRGGSLVSSVEVSLRVFDALLPPNVGYVTTSSRLLDMGEGKVRLTVETTEVKDSTWGEIPVLGPAF--EGVKFPSGEALEGVKPGSSSVDMTVEYVSDEMRVTRNEEGQVFVHVR 308          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A813JGD2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JGD2_POLGL)

HSP 1 Score: 107 bits (267), Expect = 6.220e-22
Identity = 90/253 (35.57%), Postives = 122/253 (48.22%), Query Frame = 3
Query:  417 QLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALL-GRWALVYASEDATRSSPFFWAFRKATEGIKPP-------FGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDA--AGTETKLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNE-QGQVFVFAR 1142
            +++L LL  AA T RGQ  +P  R     ++  +E   P    A+ T LL G W L+YASED TRSSPFFW +RK  +GI+ P       FG            ++ +IFA TD +P ++VGEA Q+I +  + S V I                  F   ++VMTT+     A   G+E  + V  TQ   S L     P    D   F ++ LL      S  + M  TYLD  LR+ RN+  GQVFV+AR
Sbjct:   80 EVRLQLLASAAATCRGQCGSPLAREGALQLVKAMEALNPTAAPASDTGLLEGDWRLIYASEDVTRSSPFFWGWRKMLKGIRDPTPVSLQLFGT---------EEISESIFAFTDGIPIRTVGEATQSIKDGRLISRVTI----------------QVFGFGQTVMTTSCRFMPANSEGSELAVTVETTQAMGSTL-----PF--ADTTVFPSEALLGE----SARIIMHLTYLDDDLRIMRNDADGQVFVYAR 296          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A7S2JMT5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JMT5_9DINO)

HSP 1 Score: 95.5 bits (236), Expect = 8.500e-18
Identity = 84/263 (31.94%), Postives = 119/263 (45.25%), Query Frame = 3
Query:  354 GAGTAEQERLAFTEKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPP-------FGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGTET---KLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRN 1112
            G    E E     E+     A L+++LL +AA T RGQ      R R   ++  LE   P  + A S  L G W LV+A+ED TR SPFFWA R+   G++ P       FGG           +     A TD +P K+VG A Q +   E+ ++V +                  FP+  S MTTT    +A G +    ++ V KTQV  ++L   +     LD + F +  LL      + EV+M  +YLD  LRV R+
Sbjct:   73 GGEVGEAEAAGALERAAARSA-LQMELLELAAATARGQTGDEEVRRRCCRLVARLESANPTLEPARSALLEGDWRLVFATEDPTRCSPFFWALRQQMRGVEDPNPLSRLMFGG---------DDLLENTLAFTDGVPIKTVGLATQRLRHGELVNQVVV----------------GVFPTGESKMTTTCRY-EADGADAGVLRVIVEKTQVLGASLAASV-----LDQLSFPSGQLLGD----NAEVAMRVSYLDERLRVVRD 299          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: C1DZD4_MICCC (PAP_fibrillin domain-containing protein n=3 Tax=Micromonas TaxID=38832 RepID=C1DZD4_MICCC)

HSP 1 Score: 94.7 bits (234), Expect = 3.060e-17
Identity = 85/267 (31.84%), Postives = 124/267 (46.44%), Query Frame = 3
Query:  393 EKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPGKSV----GEAVQTIT--EKEIKSEVEI------FAGASAGSDKRGKEGPNTFPSFRSVMTTTSEIT---DAAGTETKLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSR--NEQGQVFVFAR 1142
            + D  E ++L   LL +AA + RGQ A+   +  +ED+I ELE   P E+ A    + G WALVYAS +A RSSPFFW F+K   G               G  +A  +F  T  LP        G   QT++   +E+ SEVE+      FA AS      G  G          + +T+ +T   D AG    +    T+VR S +G  +     LD I   T  L++ +  G+ E   T TY+D  +R+ R   +  Q+FV+ +
Sbjct:  121 DPDAEERSRLIRKLLGLAAASSRGQQASRDAKATMEDIITELEFMNPTEEPARK--INGEWALVYASVEAFRSSPFFWGFQKMLPG---------------GEDLASQLFKFTAGLPVAGTRGPFGVISQTVSLESEEMVSEVEMRIFDPFFAVAS------GVSG---------TVVSTANVTVKPDGAGDVLLVTPRTTRVRNSNVGGAI-----LDQIVVPTSELMSSVAGGAVEAEATVTYVDDAVRIVRVGKDLDQIFVYTK 350          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A813CNS8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CNS8_9DINO)

HSP 1 Score: 92.8 bits (229), Expect = 5.780e-17
Identity = 81/244 (33.20%), Postives = 117/244 (47.95%), Query Frame = 3
Query:  417 QLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAG-TETKLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNE-QGQVFVFAR 1142
            +++L LL  AA T RGQ  + A+R     ++  +E   P  +  T   L G+W L++ASED TRSSPFFW +R+  EGI  P         F+   ++ +IFA TD +P K++GEA QT+   +I + V +                  +    +VMTTT     A   +E  L V  TQ   + L     PL   D + F ++  L      +  +    TYLD  LR+ RNE   QVFV+ R
Sbjct:   84 EVRLRLLAAAASTCRGQCGSEADRQGALQLVKAMEALNPTPEP-TKGLLEGKWRLIFASEDVTRSSPFFWGWRRMLEGIPDP--SPLSRALFNTEELSESIFAFTDGIPLKNIGEATQTLYNGQIVNRVAV----------------EIWGLGTTVMTTTCRYMPAEDPSELLLTVETTQAVDNTL-----PL--ADQVVFPSETFLGD----NARLRARVTYLDEDLRIFRNELDDQVFVYVR 297          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A7S2ME77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ME77_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.640e-16
Identity = 72/213 (33.80%), Postives = 105/213 (49.30%), Query Frame = 3
Query:  579 LVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTIT---------EKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDAAGT-------ETKLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGS---TEVSM---TTTYLDGLLRVSRNEQGQVFVFAREDD 1151
            LVYASE+  RSSPFFWAFR AT+ +  P          D S  A  IF ITD +P KS G+A QTI+         + E+  E+ +F               +  P  +S+MTTT EI+   G        + ++ V KT+V+ S++ +L    F +DD+ F T+  +     G     EV++   T  +  G LRVS+   G  F++ +EDD
Sbjct:    1 LVYASEEPYRSSPFFWAFRVATQDVTSPV--------IDPS-FAEAIFKITDGIPFKSTGQARQTISGSGSPCGSLKSEVTLEISLF--------------DSVLPRTKSIMTTTCEISPKPGVSADVISHDLEVTVLKTEVKDSSISKLPGLSF-VDDLSFPTELAIAAFSFGQGAGAEVTVDMQTELFSGGGLRVSKAPDGNFFIWTKEDD 189          
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Match: A0A7S2LK96_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LK96_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 5.880e-16
Identity = 75/207 (36.23%), Postives = 96/207 (46.38%), Query Frame = 3
Query:  567 GRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDGFDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDKRGKEGPNTFPSFRSVMTTTSEITDA----------------AGTETKLRVAKTQVRKSALGRLLKPLFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNE-QGQVFVF 1136
            G W LVY SED TRSSPFFWAFR+A EG                   A +IFA+TD LP K++GEA QTI    + + V +                  +   R+VMTTTS I +                  G++  L V  TQ    A+G  L P   + D+ F ++ +L     GS  V+M  TYLD  LRV RN   G+ FVF
Sbjct:    1 GEWRLVYGSEDVTRSSPFFWAFRRAFEGR------------------ADSIFAVTDGLPAKTIGEASQTIEGGRLVNRVAV----------------EVYGVGRTVMTTTSRIEEPDVRAEQGEDGAPLDAEGGSDLALTVETTQ----AVGNRL-PF--VPDVVFPSEAVLG----GSARVTMRVTYLDDDLRVVRNAGDGRRFVF 162          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYX5_ECTSI1.240e-23798.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4FU97_VITBC1.910e-2835.77PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
A0A7S4FYH2_9EUGL3.620e-2835.56Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0TMF4_HEMAN6.250e-2633.46Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A813JGD2_POLGL6.220e-2235.57Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S2JMT5_9DINO8.500e-1831.94Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
C1DZD4_MICCC3.060e-1731.84PAP_fibrillin domain-containing protein n=3 Tax=Mi... [more]
A0A813CNS8_9DINO5.780e-1733.20Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S2ME77_9STRA2.640e-1633.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2LK96_9DINO5.880e-1636.23Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:969485..975311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score680.6
Seed ortholog evalue3.9e-193
Seed eggNOG ortholog2880.D7FYX5
Model size2222
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG OGs2E0FT@1,2S7WB@2759
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-19_002850.1
Cds size1077
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17032.1prot_Ecto-sp6_S_contig8.17032.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 970541..975222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.4991724-UTR-Ecto-sp6_S_contig8:969484..9705401682350411.4991724-UTR-Ecto-sp6_S_contig8:969484..970540Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 969485..970540 -
1682350411.5826254-UTR-Ecto-sp6_S_contig8:975222..9753111682350411.5826254-UTR-Ecto-sp6_S_contig8:975222..975311Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 975223..975311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.5104532-CDS-Ecto-sp6_S_contig8:970540..9706451682350411.5104532-CDS-Ecto-sp6_S_contig8:970540..970645Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 970541..970645 -
1682350411.518363-CDS-Ecto-sp6_S_contig8:971190..9712981682350411.518363-CDS-Ecto-sp6_S_contig8:971190..971298Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 971191..971298 -
1682350411.533686-CDS-Ecto-sp6_S_contig8:971583..9717301682350411.533686-CDS-Ecto-sp6_S_contig8:971583..971730Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 971584..971730 -
1682350411.545085-CDS-Ecto-sp6_S_contig8:972233..9724051682350411.545085-CDS-Ecto-sp6_S_contig8:972233..972405Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 972234..972405 -
1682350411.5546572-CDS-Ecto-sp6_S_contig8:972891..9730651682350411.5546572-CDS-Ecto-sp6_S_contig8:972891..973065Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 972892..973065 -
1682350411.5641239-CDS-Ecto-sp6_S_contig8:973768..9738711682350411.5641239-CDS-Ecto-sp6_S_contig8:973768..973871Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 973769..973871 -
1682350411.5732257-CDS-Ecto-sp6_S_contig8:974954..9752221682350411.5732257-CDS-Ecto-sp6_S_contig8:974954..975222Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 974955..975222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17032.1

>prot_Ecto-sp6_S_contig8.17032.1 ID=prot_Ecto-sp6_S_contig8.17032.1|Name=mRNA_Ecto-sp6_S_contig8.17032.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=359bp
MGVSRRCSALAAFVALAAVSSECQAFINCFLRAGERTPPSAATTSMTSFR
HSSSGWCGTARAKDCGALLMSEVAEDYPSDTGDDRFAGGAGTAEQERLAF
TEKDTPEVAQLKLDLLRIAALTGRGQLATPAERGRVEDVIWELEMRTPVE
DTATSTALLGRWALVYASEDATRSSPFFWAFRKATEGIKPPFGGGGDGDG
FDGSTVAGTIFAITDSLPGKSVGEAVQTITEKEIKSEVEIFAGASAGSDK
RGKEGPNTFPSFRSVMTTTSEITDAAGTETKLRVAKTQVRKSALGRLLKP
LFNLDDIEFQTDNLLTPLKEGSTEVSMTTTYLDGLLRVSRNEQGQVFVFA
REDDGELR*
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mRNA from alignment at Ecto-sp6_S_contig8:969485..975311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17032.1 ID=mRNA_Ecto-sp6_S_contig8.17032.1|Name=mRNA_Ecto-sp6_S_contig8.17032.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5827bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:969485..975311- (Ectocarpus species6 EcLAC_371)
CCAGCACAGGCCACTGCCAGCACACAGCAGTCCACATCTCCTGCCTGTGT TGTCTCTCCAAGAGCGAATATACCCTACAGTTGGGAAAGATGGGAGTCTC TCGCCGTTGTAGCGCACTCGCAGCATTCGTGGCCCTCGCCGCTGTGTCGT CCGAGTGCCAGGCGTTCATCAATTGCTTTCTGCGAGCGGGGGAGCGAACA CCTCCATCAGCAGCAACCACTTCAATGACGAGCTTCAGGCACAGCAGCAG CGGGTGGTGCGGAACGGCAAGGGCGAAGGACTGTGGGGCACTGTTGATGT CAGAAGTGGCGGAGGACTACCCTTCAGACACGGGAGATGACAGATTCGCT GGGGGGGGTAAGCCACGGCAGTTTGAACTTCCATGTGTGACAGCTGGACT CAGCCAGACTCGGTAGACTGCCGAGTACTCCAGACTTCGGACGGCAGCAT CCGACACGCCCTCCCTACACTCTCTCTGTGTGTCACCACACAATATTAGT GCTCACATGACTGCTTACCGAGCGCCCTCCGCCGTAGGATTGTAGGCAAA CTTGCCAAACGTGTGTGTTGGACGAATGCAAGAAGTTAAAACATGAACGC ACCGCCGTTCTGGGGGAAATGGAAAAAAACATGACACCGCTTTTCACCGC TACATGTATTATACAATGCATTATCTACAACACCCGGGCCGTCGTGTGCT GGCAAACAGGAAAAAGCGAGAACGGCGATTCATATGTGTGGACGCACATA AGTAGTCCGACGCGATCTCAGTAGAAACCCTGGCCATGCCCGCGACTTGC ACCAAGTACTGCTTTGCGGGCACGCAACGCAGGGGGGCAGACCTGCTCAA ATGGCCTGCGGCACACCCCGACGATTCGCCTCGTGCGAACACAGGACACA CCAATTACCGCGTCATCCATGGAACGCCATAGCTATTCCCACGATGTAGT CTAACATGAAACCCGAACACCTCTCGTTTCCTTCTCACGCCAGAGCACCG CGGCGTGGCGGCAATCAGGAAGCGTGTTGACCCGCGTTGTACATTTTTTT TGTCGGGGGCAAGATCAGCAAACAATTCAGTGTACTTGGCTTGGACAAAC TCACAATACGCTCACAGCCGGTTTCCCTCCACTCTCTGAAAAGACTTTAG CACATCCCTTTCGACTGTGGTTATATCTCGAGCGGGTAGTCTTTCTATGA GGTTATGTATACTTTCTAAATGAACGACAGGTTCGCGAACATTCGCGATG GTTGGCATCATTCCTGATCACACACTGCCTGTCCAATGCCAGCGCTACCA TCGCTGTTGCCCGCTTCGCCCCCTCGGCTGCTCGGTCTTCCGCCGATTGG CGTTTGCCCACATGTTACGATTCTGTCCGATGTTTCAAATTCTGCCGCTG CTCCGCACGTTTTGCCGAACCTTTTCTGTTGCCTTCGAAGCCGGAACGGC CGAACAAGAAAGGTTAGCCTTCACCGAGAAGGACACGCCGGAGGTCGCCC AGCTCAAGCTCGACCTTCTGCGCATCGCTGCTCTCACCGGCAGGTAGTGG AGGTGCTGCGGGGGAATAGGCAAACGTATCGGAGCAAAAGGGAGGAAAGG GAGAGTATGGAGGGCCCCAACAAGGGCCCTGTTTAACAACGTGCCTTGTG TGTGCCGCCCGGTCTTGATGGGTTGATTTTTCTGGGGTGTACCATGTTTG TGTTCCTCCGCCGCCCAATCCCCCGGGGCTACATACTCCCTGGCTAAAGA CCAACTTCATGCTAGGAGCCTGTGTAGAGCTGTACGCGGCTGTGCGTGCC GGAAATGACTGGGTCATGTAGTATGCATCTAAAATTATCGCCTGCTGGTG CGTGCTGTGTTCCTGCACGTTTTGACGGCGTGTCTAGCACCACCGGCGTT GACCAATCGCGGAGGCGTAGCCTCGCAATGCCCTTCTGGTGCTGTAGAGG CCGAGGTGGTGTGCGTGCTGCGCATGCACCGGCTTAGCGAGAGGGGCGGT TGACGACGAGCGTGGAAATTCGGGGGTGCGGGCACCCTCGGTGAGACTCC TTGCGTCGCCATGGGAACGTGCTTTCCATGAATTCGCGTTTTTTGTGCTG TTTGTGCTCTTCAACCCTGTTTTTGGTGGCCAAGCCTCCACCACCACCAC TACCACCGACCACCCGCCCCGCCCACGTTGCGCGCCATCAGGAAACATCT CAAGCTCACCAAAACGCGCGCTTGAACGCATGCTTGGTAAAAACAGGGGT CAGTTGGCCACGCCGGCAGAACGCGGGCGCGTGGAGGACGTCATCTGGGA GCTGGAGATGCGGACGCCAGTGGAGGACACGGCCACGAGCACGGCGTTGC TGGGGAGATGGGCTCTAGTGTACGCCAGCGAGGACGCCACTCGATCCAGC CCTTTCTTTTGGGCGTTCAGGTAGCTCCCGTGTTCTGCTTCCTGTTGTGC GTGCCGTGTGCTATGCTTTTTGGGTGTTTTGGACACGAGTGATGTCCCTG TATTCATCCCTCTGTTTGTTGAGTCCTTGTGTCACGTCCACTCTCGTGGG AGCTTGTATTGTATTCTGCGCTTCTTCGGGTCGTATGATGCATGGCGAAA CACAAAAAAACAACCAACGCCAAATTGCACAAATACACCCAACACGTCGT GAAGAGGGATCCCCAAAAAGGCCAACCGGTGATGAGATGCAGCAAGCAAG ATTTGCAATCAATTTCGTCCTGCCATACAGTAGCCGGCGTAGTAAAGATC AACTGCATCACGAAAAGCGTTTTGGGAGATAGGATGTCGGAATAATTGTC CTTTTTGTTCCAAATCGGAAAAGTCTCAATGTTACCCGCAGTCTCCGACC AGGTTGAGAAACTCACTGCCCAATCGCACACCGAAAAAACACGTACCGTA TCCCAGGAAAGCGACTGAGGGGATTAAGCCTCCCTTCGGAGGGGGCGGCG ACGGGGACGGCTTCGACGGCTCCACGGTCGCGGGCACGATCTTCGCCATC ACCGACAGCCTCCCGGGCAAGAGCGTTGGCGAGGCGGTCCAGACCATCAC GGAGAAAGAGATCAAGTCGGAGGTAGAGGTGAGCAAACAACCAACTCTGC CTTCTGAAAGAGTGTACGCCGGGATGCCGAGGACATCAGTTTTCGCATGT CTTGCTCGACGAAAGACGGAGCTGTACAGCTGTAGCAAGAGCAGGAAGTG GTAGCATTTGCGGTCAAGCGTGCTTCCTGGAGGGGTCAAATGCCCGGCGG TGGCGCGAGCGATCCAGAGTTTGAGAGATAGCGCTGGAGATCCCTGCATG AGGTCTGTGAAGCAACTCTGGTCGGTTATGGTGCCGGATCGGGTGGTTCG TCGGTGTAGCAGCAGTCGATCCACGCAGCGACGACGAACGGGGGCAAATC TTAATCACCTCAGCAGGCAATGATAAAAATGACACGACCACGGATGTGTC TTCCTCAATTGTTTAGGTCACGGGGGTGGTGCGCAAGGGTATGTGGAGGG AAGTCACAGCACTTGTGTCAAGACCGCAACAAGAACATCGCGCGTGCCTG TGTTGTTTGTGTTCCGTTCATGACGGCATAGATTTTTGCGGGGGCTAGCG CGGGTTCGGACAAGAGAGGGAAAGAGGGCCCGAACACGTTCCCGTCGTTC CGCAGCGTGATGACCACGACGTCGGAGATCACGGACGCTGCGGGCACGGA GACGAAGCTCAGGGTAGCCAAGACTCAGGTTCGTCAGTTGGTTGGCTGAT AGCCGGGTCTCGTCTTGCAGTCGTGCTGTGCTTGTCGTGTGATTGTTGTT GATGCTGGTGCTGCGCTGTTGGTGTCGCTATATCGCGACTTTTTCTTCTG TCGAAACAACGACAGCTGCTGCAGATCGTGCTGTCGCTGTCGCCGATTCG TTGTTGTTGATGCTGCTGTCGCTGTTGCCGCCCCAAGGCTGCCCTTGCCA TTTTCGTGTTTTGGACGATCATCGACCCAGTTCGAACGTTTGTTTCTTGG TGGGCGGTTTCAGGTGCGAAAAAGCGCGCTTGGGCGGTTGCTGAAGCCGC TGTTCAACCTGGACGACATAGAATTCCAGACGGATAACTTGCTCACACCG CTCAAGGAGGGCTCCACCGAGGTATGCAAGCATACGGTAGTTAGTGTTCG GACCGTGGTGGTGTGTGGGTTATTTTTTCATGGTGGTGATGCTGCGCTTG CTCCCTCGATTTTTTTACTTGGACTTGAGCTCCTGATCAAAACGACGGTC CTAAATACTTACTTCGTCTCACGACACACACGAATGTGTGCTATGTCGTG CTGAGTGTGCTAACTCCGCCGCTCTGATGCTCCCGCGCCCGAACCTACAC GCGCCTACCTAGCAGCCAGCCCCGCGACTGCACAGGCACACGGCGTGCTG ATACCACCCGCTCTTGCATCTCGCGTCTGCACGGTTCCATGTGTCATGTC GATAAATCAATTTTATCTATTATCGAAGCGTGTACAGCCCTTTCGCATGC TTGGTTTCGGCACGTAGCATTTTTTGCACAATGTGCTTATTCTGGACGCA AAAAGGTATCGAGTTCTCGATGACCGTTTCTTGGTATTAGTGACAATCCT TTCGTGCCGCCGCCGTTTTGCATGGTGGTTTGTGACACTGCTATCGTCTT TTCTGCTTTAATCAAGGTGTCGATGACCACGACGTACTTGGACGGGCTCC TCCGTGTGAGCCGCAACGAGCAAGGGCAGGTGTTCGTGTTTGCGAGGGAA GACGACGGGGAGTTGCGATGAGAGAGAGGGCGTTTCGCTGTCGACGAAGA GGGTCCCCAGACTCGCTTGGCATCGTGTGCTGTTTTTCTCGGTGCTCGCG GTGGAGGGGGGGTCGCAGGGGTAGGAGTTGTGTTTCTCTTTTGGCTGCTG AGAGAAGCAGCTGGATAATAACACGGGGTTTCCTTGCGAGGACGAATAAG GTTCGTTTCGATCCCCGCTCCCCCCACCCCCGCCCCTTGCCCCCATCAGT TTCGGCAGGGGGACGGTGGGGCAAGCTTGCTATTAATCGCTGCGATTGAG GCCAACATGATTGTTTTTCCCGAAAAGACGATAGACTTGTAATTTGATAC ATTGCTACCGTGATACCAGAATACGCCACCAGAGTTGCTGCTACCCATGA CAAAGCACGGGGAGTGCTTTACGATGCCCTGTCGTGGTGCCCAAGCTGGG GTAGAGGGGATTGGTCGGCGACGAGGCCGTAACATTATCCTTCTGTGCGA CTCAACACCAATGGTCACGATTTCGTTGCTGATGACATCCTTTGTTGTCA AAACTCTCCTTGTTAACCGTGACACCCGCGTCGGGCTTGCCGCTGCAGTT TTCACACTTGCCAGCACCTCTTCTGTCTGAAGTAGATATGCCTCCTCGGT GTTGGTTGCGTAGTTACACGGGGGCCTACGCCCGCTTGACACGAAAGAAA GTTTTTGTGGGGAACATGGCGGTTCTCTTCACTGCTGTCTCACCGGCAAC ATTGCCAAAATAGCATCCCATGTGGAGTGTTGGTGTCTCCTGAATGGGCT CAATCGCATCGTGGTAATTTTGCATTGCAGGGTTTCGTCAAACGTGCTGA GCGTATCGCCGGTGTGTCCTCGAAAACAAGTTGTTGTCGGTCTTAACGAC GCTCTCTCCGCCTCCATCTCGAAATCACGATCTCTGGTTGGAAGCCTTGC CCTTCGCTTGCCTCGACAATACTTCACTCTTGTTTCGTGGGAACGTGTCG GGGAAGCGGGAGAGCCGGGTCACTGGCTTAAGATTGTTGTTTGACTCGAG GATAACGTGGACAGAACGGCATGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:969485..975311-

>mRNA_Ecto-sp6_S_contig8.17032.1 ID=mRNA_Ecto-sp6_S_contig8.17032.1|Name=mRNA_Ecto-sp6_S_contig8.17032.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1077bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:969485..975311- (Ectocarpus species6 EcLAC_371)
ATGGGAGTCTCTCGCCGTTGTAGCGCACTCGCAGCATTCGTGGCCCTCGC
CGCTGTGTCGTCCGAGTGCCAGGCGTTCATCAATTGCTTTCTGCGAGCGG
GGGAGCGAACACCTCCATCAGCAGCAACCACTTCAATGACGAGCTTCAGG
CACAGCAGCAGCGGGTGGTGCGGAACGGCAAGGGCGAAGGACTGTGGGGC
ACTGTTGATGTCAGAAGTGGCGGAGGACTACCCTTCAGACACGGGAGATG
ACAGATTCGCTGGGGGGGCCGGAACGGCCGAACAAGAAAGGTTAGCCTTC
ACCGAGAAGGACACGCCGGAGGTCGCCCAGCTCAAGCTCGACCTTCTGCG
CATCGCTGCTCTCACCGGCAGGGGTCAGTTGGCCACGCCGGCAGAACGCG
GGCGCGTGGAGGACGTCATCTGGGAGCTGGAGATGCGGACGCCAGTGGAG
GACACGGCCACGAGCACGGCGTTGCTGGGGAGATGGGCTCTAGTGTACGC
CAGCGAGGACGCCACTCGATCCAGCCCTTTCTTTTGGGCGTTCAGGAAAG
CGACTGAGGGGATTAAGCCTCCCTTCGGAGGGGGCGGCGACGGGGACGGC
TTCGACGGCTCCACGGTCGCGGGCACGATCTTCGCCATCACCGACAGCCT
CCCGGGCAAGAGCGTTGGCGAGGCGGTCCAGACCATCACGGAGAAAGAGA
TCAAGTCGGAGGTAGAGATTTTTGCGGGGGCTAGCGCGGGTTCGGACAAG
AGAGGGAAAGAGGGCCCGAACACGTTCCCGTCGTTCCGCAGCGTGATGAC
CACGACGTCGGAGATCACGGACGCTGCGGGCACGGAGACGAAGCTCAGGG
TAGCCAAGACTCAGGTGCGAAAAAGCGCGCTTGGGCGGTTGCTGAAGCCG
CTGTTCAACCTGGACGACATAGAATTCCAGACGGATAACTTGCTCACACC
GCTCAAGGAGGGCTCCACCGAGGTGTCGATGACCACGACGTACTTGGACG
GGCTCCTCCGTGTGAGCCGCAACGAGCAAGGGCAGGTGTTCGTGTTTGCG
AGGGAAGACGACGGGGAGTTGCGATGA
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