mRNA_Ecto-sp6_S_contig8.17029.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17029.1
Unique NamemRNA_Ecto-sp6_S_contig8.17029.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig8.17029.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI)

HSP 1 Score: 1136 bits (2939), Expect = 0.000e+0
Identity = 726/791 (91.78%), Postives = 730/791 (92.29%), Query Frame = 1
Query:    1 GHWQFISQRVQAFHLQLASELLRAPSLASKTPTEMDRIRTSFEHACRRSISRIQLGNDPDLALGNSAERMFSGIVRLHKCSIHQELKEEFGPAVETLLIFVAVDSVSKHALQSFKGAFSARAEINRQASAADKPRRKFLPSAAAXXXXXXXXXXXXXXX--EAERLMAYQXXXXXXXXXXXXXXXXXXXXXXXGVVRKAAAAQRAAVVGSNSRRATASPSKAKAAKAPRLCRTKSAGSSGHXXXXXXXXXXXXXXTGRYRGGGGRGGWNTVRLPEEDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGGRKSRSKLRPFRDAPSQRVGVDSLSAWSESGWLSREQVAANEFARRVGFRRGVGLSMPASAEWRRKKRMAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQMEIEECDESRLSVDGGGVDARPSVVGVRDEGVGERRKRQRTGNDMDHHSDDDGNRKSRSGSGEDEQARALVRDVRRRFHRFGATTPAAPGGRIEINNADLTEHLRAVMPSCSRESWAILSGLKARLASQRRRAADARR 2367
            GHWQFISQRVQAFHLQLASELLRAPSLASKTPTEMDRIRTSFEHACRRSISRIQLGNDPDLALGNSAERMFSGIVRLHKCSIHQELKEEFGPAVETLLIFVAVDSVSKHALQSFKGAFSARAEINRQASAADKPRRKFLPSAAAXXXXXXXXXXXXXXX  EAERLMAYQ   XXXXXXXXXXXXXXXXX   GVVRKAAAAQRAAVVGS SRRATASPSKAKAAKAPRLCRTKSAGSSGH XXXXXXXXXX   TGRYRG G  GGWNT RLPEEDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADG                                     VAANEFARRVGF+RGVGLSMPASAEWRRKKRMAEAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DQMEIEECDESRLSVDGGG+DARPSVVGVRDEGVGERRKRQ TGN+MD  SDDDGNRKSRSGSGEDEQARALVRDVRRRFHRFG TTPAAPGGRIEINNADLTEHLRAVMP+CSRESWAILSGLKARLASQRRRAADA R
Sbjct:    3 GHWQFISQRVQAFHLQLASELLRAPSLASKTPTEMDRIRTSFEHACRRSISRIQLGNDPDLALGNSAERMFSGIVRLHKCSIHQELKEEFGPAVETLLIFVAVDSVSKHALQSFKGAFSARAEINRQASAADKPRRKFLPSAAAXXXXXXXXXXXXXXXNLEAERLMAYQNHQXXXXXXXXXXXXXXXXXSRPGVVRKAAAAQRAAVVGSKSRRATASPSKAKAAKAPRLCRTKSAGSSGHGXXXXXXXXXXPRGTGRYRGAGRGGGWNTARLPEEDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADG-------------------------------------VAANEFARRVGFKRGVGLSMPASAEWRRKKRMAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DQMEIEECDESRLSVDGGGIDARPSVVGVRDEGVGERRKRQSTGNNMDDQSDDDGNRKSRSGSGEDEQARALVRDVRRRFHRFGGTTPAAPGGRIEINNADLTEHLRAVMPTCSRESWAILSGLKARLASQRRRAADAGR 755          
BLAST of mRNA_Ecto-sp6_S_contig8.17029.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE)

HSP 1 Score: 978 bits (2529), Expect = 0.000e+0
Identity = 638/752 (84.84%), Postives = 661/752 (87.90%), Query Frame = 1
Query:  142 RSISRIQLGNDPDLALGNSAERMFSGIVRLHKCSIHQELKEEFGPAVETLLIFVAVDSVSKHALQSFKGAFSARAEINRQASAADKPRRKFLPSAAAXXXXXXXXXXXXXXX------EAERLMAYQXXXXXXXXXXXXXXXXXXXXXXXGVVRKAAAAQRAAVVGSNSRRATASPSKAKAAKAPRLCRTKSAGSSGHXXXXXXXXXXXXXXTGRYRGGGGRGGWNTVRLPEEDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGGRKSRSKLRPFRDAPSQRVGVDSLSAWSESGWLSREQVAANEFARRVGFRRGVGLSMPASAEWRRKKRMAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ-------MEIEECDESRLSVDGGGVDARPSVVGVRDEGVGERRKRQRTGNDMDHHSDDDGNRKSRSGSGEDEQARALVRDVRRRFHRFGATTPAAPGGRIEINNADLTEHLRAVMPSCSRESWAILSGLKARLASQRRRAAD 2358
            RSISRIQLGNDPDLALGNSAE++FSGIVRLHKCSIHQELKEEFGPAVETLLIFV VDSVS+HALQSFKGAFSARAEINRQASAA +PR KFLPSAA XXXXXXXXXXXXXXX      EAER M YQ        XXXXXXXXXXXX   GVVRKAAAAQRAAVVGS  RRATASPSKAKA KAPRL RTKSAGS GHXXXXXXXXXX    TGRYRG G  GGWNTVR PEEDR GLLKLPWDGLD VSEQ KLVTDARVQLIEERR RPS+VPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEA+EDAEAAAR REKQPWFARNVVDHRSAWCGLR+AGARAG+RKVLQPRPWGD LAPSGGGQEAANSQVLE       AYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSAL+LYEGLVPRF RY+ GG XXXXXXXXXXXXXXXXX          E AHRRSCL+REAGWEARVAEVMAAA GGRKSR+K R   +APS+RVGV+SLSAWSESGWLSREQVAANEFARRVG +RGVGLSMPASAEWRRKKRMAEAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         ME+EECDESRLSVDGGG+DAR SVVGV  EG GE+RKR RTGNDM H SDDDG+RKSRSG+GEDEQAR LVRDVRRRFHRFG T PAAPGGRIEINNADLTEHLRAVMP+CSRESW +LSGLK RLASQRRRAAD
Sbjct:   11 RSISRIQLGNDPDLALGNSAEQIFSGIVRLHKCSIHQELKEEFGPAVETLLIFVVVDSVSRHALQSFKGAFSARAEINRQASAAGRPRPKFLPSAAXXXXXXXXXXXXXXXXXXXXNLEAERPMVYQNHQQQRIRXXXXXXXXXXXXSGLGVVRKAAAAQRAAVVGSKPRRATASPSKAKAVKAPRLYRTKSAGSGGHXXXXXXXXXXTPRETGRYRGAGEGGGWNTVRPPEEDRKGLLKLPWDGLDVVSEQAKLVTDARVQLIEERRFRPSFVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAQEDAEAAARWREKQPWFARNVVDHRSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLE-------AYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALILYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRVGVESLSAWSESGWLSREQVAANEFARRVGVKRGVGLSMPASAEWRRKKRMAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMELEECDESRLSVDGGGLDARSSVVGVGREGAGEKRKRHRTGNDMAHQSDDDGSRKSRSGAGEDEQARTLVRDVRRRFHRFGGTIPAAPGGRIEINNADLTEHLRAVMPTCSRESWELLSGLKTRLASQRRRAAD 755          
BLAST of mRNA_Ecto-sp6_S_contig8.17029.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 3.500e-52
Identity = 126/326 (38.65%), Postives = 168/326 (51.53%), Query Frame = 1
Query:  820 EDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQP---WFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGGRKSRSKLRPFRDAPSQRVGVDSLSAWSESGWLSREQVAANEFARRVGFRRGVGL 1788
            + R GL KLP D LD+  +QV+ +  + V   EE RLR +  P + P                                        EK P   WF  NVVDHR AWC LR+AG RAG+R+VL+ RPWG+P  P  GG+EAA S VL+L+S A Q YLK +L EL+VVAYQR+GGLS ELL G+E R+ DP        L + LVPR PR +                     + PR  L R E AHR+ C ERE  W+  +A+ +  A+  RK   +    +  P      + +   ++SGWLS+EQ+A +EFARRV  + G+G+
Sbjct:  187 DPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPP----------------------------------------EKPPASTWFLTNVVDHRHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRDPSVKDPKAELRQSLVPRLPRVQ---------------------DLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGV 451          
BLAST of mRNA_Ecto-sp6_S_contig8.17029.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.210e-49
Identity = 123/326 (37.73%), Postives = 167/326 (51.23%), Query Frame = 1
Query:  820 EDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQP---WFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGGRKSRSKLRPFRDAPSQRVGVDSLSAWSESGWLSREQVAANEFARRVGFRRGVGL 1788
            + R GL KLP D LD+  +QV+ +  + V   EE RLR +  P + P                                        EK P   WF  NVVDHR AWC LR+AG +AG+R+VL+ RPWG+P  P  GG+EAA S VL+L+S A Q YLK +L EL+VVAYQR+GGLS ELL G+E R+ DP        L + LVPR P   +                      PR +L + E AHR+ C ERE  W+  +A+ +  A+  RK   +    +  P      + +   ++SGWLS+EQ+A +EFARRV  + G+G+
Sbjct:  388 DPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPP----------------------------------------EKPPASTWFLTNVVDHRHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRDPSVKDPKAELRQSLVPRLPSVRNL---------------------PRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGV 652          
BLAST of mRNA_Ecto-sp6_S_contig8.17029.1 vs. uniprot
Match: A0A835ZEB0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.160e-5
Identity = 36/125 (28.80%), Postives = 61/125 (48.80%), Query Frame = 1
Query: 1090 PWFARNVVDHRSAWCGLRNAGARAGL-------------------------RKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMEDPRS 1389
            PW+A NVVDHR+AW  L +A    G+                         R    P  W  P+     G+ AA S++  ++SAATQ Y++++L++L  +++ RR GL+ ++   +E  +   R+
Sbjct:  348 PWWAANVVDHRAAWSKLSDAWRETGVVVPALADAAGXXXXXXXXXXXAAAGRLPQAPAGW-RPMPGWAAGRGAAGSELCAMVSAATQQYMQKILSDLVALSWHRRSGLARDVQSAVEAAVATART 471          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FYX3_ECTSI0.000e+091.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4T0_9PHAE0.000e+084.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCB6_ECTSI3.500e-5238.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTJ7_9PHAE1.210e-4937.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZEB0_9STRA1.160e-528.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:926952..932993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2370
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002810.1
Cds size2370
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17029.1prot_Ecto-sp6_S_contig8.17029.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 926952..932993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.2690134-CDS-Ecto-sp6_S_contig8:926951..9270921682350411.2690134-CDS-Ecto-sp6_S_contig8:926951..927092Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 926952..927092 +
1682350411.277702-CDS-Ecto-sp6_S_contig8:927669..9278731682350411.277702-CDS-Ecto-sp6_S_contig8:927669..927873Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 927670..927873 +
1682350411.285282-CDS-Ecto-sp6_S_contig8:928463..9289611682350411.285282-CDS-Ecto-sp6_S_contig8:928463..928961Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 928464..928961 +
1682350411.2931216-CDS-Ecto-sp6_S_contig8:929485..9297631682350411.2931216-CDS-Ecto-sp6_S_contig8:929485..929763Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 929486..929763 +
1682350411.3015454-CDS-Ecto-sp6_S_contig8:930136..9302691682350411.3015454-CDS-Ecto-sp6_S_contig8:930136..930269Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 930137..930269 +
1682350411.3102503-CDS-Ecto-sp6_S_contig8:930984..9310871682350411.3102503-CDS-Ecto-sp6_S_contig8:930984..931087Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 930985..931087 +
1682350411.3192272-CDS-Ecto-sp6_S_contig8:931588..9318541682350411.3192272-CDS-Ecto-sp6_S_contig8:931588..931854Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 931589..931854 +
1682350411.328275-CDS-Ecto-sp6_S_contig8:932246..9329931682350411.328275-CDS-Ecto-sp6_S_contig8:932246..932993Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 932247..932993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17029.1

>prot_Ecto-sp6_S_contig8.17029.1 ID=prot_Ecto-sp6_S_contig8.17029.1|Name=mRNA_Ecto-sp6_S_contig8.17029.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=790bp
GHWQFISQRVQAFHLQLASELLRAPSLASKTPTEMDRIRTSFEHACRRSI
SRIQLGNDPDLALGNSAERMFSGIVRLHKCSIHQELKEEFGPAVETLLIF
VAVDSVSKHALQSFKGAFSARAEINRQASAADKPRRKFLPSAAAIAAAAA
AAAATATNLEAERLMAYQNHQQQRLRKELQHHHHHRHQPRPGVVRKAAAA
QRAAVVGSNSRRATASPSKAKAAKAPRLCRTKSAGSSGHGSGGSSSGGST
PRGTGRYRGGGGRGGWNTVRLPEEDRNGLLKLPWDGLDAVSEQVKLVTDA
RVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAE
EDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGD
PLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEEL
LQGLEERMEDPRSPGSALVLYEGLVPRFPRYESGGSSTTITTGTPAAAVA
TTTEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAADGGRKSRSKLR
PFRDAPSQRVGVDSLSAWSESGWLSREQVAANEFARRVGFRRGVGLSMPA
SAEWRRKKRMAEAAEARVRGGGGGGSGDRYTLGGSGQQQQQQHQEEEGED
QMEIEECDESRLSVDGGGVDARPSVVGVRDEGVGERRKRQRTGNDMDHHS
DDDGNRKSRSGSGEDEQARALVRDVRRRFHRFGATTPAAPGGRIEINNAD
LTEHLRAVMPSCSRESWAILSGLKARLASQRRRAADARR*
back to top

mRNA from alignment at Ecto-sp6_S_contig8:926952..932993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17029.1 ID=mRNA_Ecto-sp6_S_contig8.17029.1|Name=mRNA_Ecto-sp6_S_contig8.17029.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6042bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:926952..932993+ (Ectocarpus species6 EcLAC_371)
GGTCACTGGCAATTCATCTCGCAGCGGGTCCAGGCGTTCCACTTGCAGCT GGCGAGCGAGCTACTACGGGCCCCCTCGCTTGCCAGCAAGACACCAACCG AGATGGATAGGATTCGAACGTCCTTCGAACACGCCTGCCGAGTGAGTGTG GTCAACTACAGCCTTCCATCGAACCGCCTTCCCCCCGCGACCGCGTTGTT GTCTTGAGTTCTTGGGAGAAGGAACGTCGTGGCCACAACAGGCTGTTGAG GAAGCGGGTGGATGGGTTGGGCCTGTTGTTTGGAAGTTCGGGCCCGGCCG ACTTCTGGTGTGAACTTTGTGAACCCGACCAATGGTGAACTTTGTTTCTT CATGCTTGAGAGAGATGGGAACAGTCTTCGCGCTATCATACTTTCAAACG CATTCGTGAGGCATTCGTAGGGCAAGAGAAAACATCAAGACCACGCCTCA AGACTTAGCCACCGACTGCGGCACGTTTCGAGCGCATCAACATCATAGCG GCGGGTGGGGGCATTCAAACTGCGCCACGTTGCTCGAGGATTGGGGAAGG ACCGGATGGGAGGTTGTAATTTTTCGTTGACGGGGGTAGCTTGTCCTTCC TGCCCATGGTAGGACAAGAATTGCAACGGTGGCAACCCCCCCCCCTCCCC CCGCCCCTCCCAAAACCGCGTTGCGGCGGTCGAATTGGTCGCATCATGCC CCCGCCCTTCACCGACAGAGATCGATCTCGAGGATACAGCTCGGGAACGA CCCGGACCTTGCGCTCGGCAATAGCGCCGAACGGATGTTCTCTGGCATCG TTCGGCTGCACAAATGCAGCATCCACCAGGAGCTGAAAGAGGAATTCGGG CCCGCGGTGGAGACGCTGCTCATATTCGTGGCGGTCGACAGCGTGAGCAA GCACGCCCTCCAAAGCTTCAAGGTTTGTCGGAGCCATAGAAACCGAAATT TAAGCCTTTAGAGGTATATATACTGCGATGTCGGCTTCTTTTGAGCGAAA ACACGCCAACGACGCAACAACAATAATGGGAAAATTTTGGCACCGAGAGA AAGATGAAAACCACAACTACACAGCAAGTAACGttTTTTTTTTTTTATGT AGCAGTTCCAACTCACGAGGTACCTCGAGGTAACACCTCTCTGCAGGCGG TGTGTAGTCCTCCTTTTGGGAAACTAAGAACAACTCGTATCGCACGGATG CTAGGAGGTTCTGAGTAGAGATCGAAACGGGTTTTAAAGTAAAGACAATC GAAACAACATCCCCAGCGATGCTCTTTTGTGATTCATGCTCTCGCATGTT TTACCGCTGCTTTACGGTAGGGGGGACAAACTATTCCCGTACGAACCAGG GCAAGAGATGTCACGGGGAGACAGCAGCAGCAGCAGCAGCAACAGCAGAG TAGATTAGATTGGGTGCTTGCGCTAACGACCTGATGGGTAGTCGATTATG CTCAGAATACTTTATCGCTGGTGCCGCTCTGCGTGTTCCTCCGCCGACCC GCGTCATCACAGGGGGCCTTCTCAGCCCGCGCAGAGATAAACCGTCAGGC GTCCGCTGCCGACAAGCCTCGCCGCAAGTTTCTACCCTCTGCCGCCGCAA TCGCCGCCGCTGCCGCCGCCGCCGCCGCCACTGCCACCAACCTCGAGGCC GAACGCCTGATGGCCTACCAAAACCACCAACAGCAACGGCTCCGAAAGGA GCTGCAACACCATCACCATCACCGCCACCAGCCGCGTCCCGGCGTCGTGA GGAAGGCCGCGGCTGCGCAGCGAGCGGCGGTGGTTGGCTCAAATTCACGG AGAGCGACTGCGTCGCCATCAAAAGCGAAGGCGGCGAAGGCACCGAGGCT CTGCAGAACGAAATCGGCTGGGAGTAGTGGCCACGGCAGCGGCGGTAGCA GCAGCGGCGGCTCCACCCCTAGGGGAACCGGCCGCTATCGGGGGGGCGGG GGAAGGGGGGGCTGGAACACCGTGAGGCTACCGGAGGAGGACAGGAACGG GCTGCTCAAGGTTGGGGGAGGGAGTGTCGGGCGTTTAGCGGGAGCAAGGG GCGAGGGGTGTTTCTTGGGGGTCTGGTGGGGAATAAGGGTAGACGGCAGT AGAAAGTGAGTGGCGGTCAGATAGCTTGGTCGATGGTTGTTGCTGCTGGT GCTGGTGCTGCGATAGTCTTTTCCCCCCCACGTTGTTCGATGATGGATGC ACGCATGAAGGACAACTTTGCTTTGATTTGTTTTTTTCATCTCGCCGTCG TTTCTCGCTGCTTTAGTTTTGTTTGTGTGTCTCGTCTCTGAGTGTGCTTT GAGAACGTTTCTTCCCAACGTACGCTCTGAAAGGCGACGAAAACCTGACA GTGTTTTCGGGGGTTGCGCGCATGACACCCTGTTTCTCGATATTTCGAAC AAATACTGCCGCAATGTTTCCTGCTGCTACTGCTGCTGCTACTGCTGTTA CGTGGCTCACACCTAGCGCCGCTGACAAGAGCTCATAATAGTTTCGCGAT TTTTCTCCCGCTCTTTCTCTCCTCATCGTCGCAGCTGCCGTGGGACGGCC TAGATGCGGTGAGCGAACAAGTCAAGCTCGTTACCGACGCCAGGGTGCAG CTCATCGAAGAGCGCCGGCTTCGGCCCAGCTACGTGCCCCCGCTCTCCCC CCGAGACTACCAATATTCTTCCGGAACCGGCGGCGATTCCACCGAAGAAC CGGGGTCCCCTCAGGGCCACGACGACTCGGAGGAGGCGGAAGAAGACGCC GAGGCTGCTGCCCGGCGGCGGGAGAAGCAGCCTTGGTTTGCTAGGAACGT TGTCGATCACAGGTGCAGTGAAGGCTGGAGGAGGCAAGCACTCACTTTCC CCACCATTTTGGGATGGGAGTTGTAGATAGAGCTCAGCGCGCGATTCTCA TGCCGCCGAACGTAAGGGGATGCCTGCACCCTTGGTACGCATGTTTTGCC CGCGGCGAAAAGTCTTGAGGGCAGGTGGATAAACCCTGATGAGGAGAGGG GTACCTCTGGACCCAGCAGCACCCGGTCCGGGATACGCGGACGATAACTT TCATTTTTTTCGTGGTTGCTGTTTTCAGCGGATTTACGTCCACGCAGGCT GCCCCATCTCTCCCTGCCCCTGTCGGCTTCCGACCTACCTATGTGCCGAC CGCCTCTTGTTTTGCTGTGCTCGGTGGCCGGGAAGGTCGGCGTGGTGCGG CCTGAGGAATGCCGGAGCACGCGCGGGGCTGCGGAAGGTGTTGCAGCCCC GCCCCTGGGGCGATCCGCTTGCTCCCTCCGGGGGTGGCCAGGAGGCCGCT AATAGCCAAGTCTTGGAGGTAGGCGTGTATTTACCGACCCTGTGCTGCCG GTTTGTTTTTGTGGCGACACAAAATGTGACAGCACTACTTCGCGGCACTG CGAGGTACCATGTGAATGGCAGGGTGATACGGGTGTTTTATACTTGCAAG CATGAAATGTTTTTGGCGGGCATTCCGCTTGCGTTGATCGTTTTGTTTCT TGTTTTCTCGCTGATTTGGGGCGTTTTCCCACTTGCGGTTGTGGTCCTGA TCTGTCGTGCTGTTGCTGTTCAATAGTTGTCGTTCTTCTCCAGCTTCCGT AACGTCCATACGTGCCAGGGTGTTTTTCTCATGGGTGTATGTATGTATTG TCTCCATCTACGGTTTGCCTCGGCTCGATCATGTTACTATTAATGGGGTC TGCCTAGATCCGTCGTGTCGCACGCGCGGGGGTCTCATCCCTTCCTTCCA TCCCTAGCGCCGAATTGAACTCGTTCATCGCCCACCGCAGTGCCACATGT CCACCCTTGTGTGACATCGCAACACGACGGTGATCGCGTTTGTCAGGCGT TGTATCATAGCCGCAAACAAGCAATCCCGCTGATTGTGGCCCGATGGGTG AGTGTAATAGTGCGGCCGATGGTGTAGACCGCGGGAACGTAACACTCCCT CTCTAGGCGTTCAGCGTATCCCAGTCACTTCGCGTGCCCCACTATCGTCC CCGTGTTGCCGTGCCTCACGCCGGCCTTTGCAGCTCATATCAGCGGCCAC CCAGGCTTACCTTAAGCGCGTCCTGACCGAACTATCGGTGGTGGCCTACC AGCGGCGGGGAGGGTTGTCAGAAGAACTGCTTCAAGGTTGGTTATTGGAT CTCGAGAGTGGCACCACCACGTGGTAAATCGGTTCGTCGTACGGGGAGCC TTGTTTAACTGGACGGGTTTTTCGTGGCACCGCCAACGTGACGGGATTTT TTTTGTCCTTTATCGCCTGTCTCTGCTGTTGTTGTCGTCGTTGTTTTTCT TGAACTACTGTAGTAGTGGTAGGGATAGTTGCTGTTGCTGCTGTGTCGCC ACCAGATGCCCGTTGTTAATGGCGCTGACAGCAAGGGATCGACGGCTGCG ATGGTTCTTCTTGCGCGATGGATGTCCACGCTCCTGGTATACATATCCAG CGTCCACAGAGACCAAACGCAAGCTCGGACTTGTGTACGCGTGTAACCAG TCCCAACATTGCTCAAGAGACATCTATCTGCCTGGCGATGGAACCAGCTT TGCGTTTCACATCTCCCGTCACACGACTTGCCTTGCCCGCACTGAGACTG TCCGACCACGCACACCCTGCGAACGTGTCCAATGAAGGTCTCGAGGAGCG AATGGAAGACCCCCGGTCACCGGGCTCCGCGCTCGTCCTGTACGAGGGAC TGGTGCCTCGTTTCCCGCGCTACGAGTCCGGAGGGAGTTCAACGACGATC ACTACGGGGACACCGGCTGCAGCAGTGGCTACGACAACCGAGGACCCTCG CGAGGTGCTGCGGCGTGAAGAGGGGGCCCACAGACGGTCGTGCCTGGAGA GGGAGGCCGGCTGGGAGGCGAGGGTCGCGGAGGTGATGGCGGCCGCAGAC GGGGTGAGGTTTATTGGTCTGCGTTGACGTCGGCCGCCGTGAGGGCTGTT GATATCCGGCGGCGGCGGCGGCGGCGGCCTGTTTCTATGCCTCCCTCGAT CTGTGTTGGTTGTCCGCGGCCACAACGTTTTCTGTTTTTTTCCAAGAGCT GGCTGCTTACGGTCGAAAATTCCCGGACTATTGCTGACGCTGCTTGTGTG TGTGGCCTAGTTCTCGCCGGCTGTTCCACCCCTTGGACACACGGGGACAA CCGACACATACACGTTTGAGTAGATGACGTGCTGCTATTTGTGTTATTAT CCCACCACAAGACTAATGTCTTCTCATTGGTCTCCCGGTTAGTACGGTCG ACGGCAATTCTGAAGAAGCACACCGAACGACGACGACACATACAGGGGAG GAAATCGCGGAGCAAGCTCAGGCCGTTTAGGGACGCGCCCTCGCAGAGGG TGGGCGTGGATTCTCTGTCGGCGTGGTCCGAGTCCGGCTGGCTGTCGAGG GAACAGGTGGCGGCGAACGAGTTCGCGAGGCGGGTGGGCTTCAGGAGGGG GGTGGGTCTTTCGATGCCGGCCTCCGCGGAGTGGAGGCGAAAGAAGCGGA TGGCGGAGGCGGCGGAAGCGAGGGTTCGTGGAGGCGGTGGCGGTGGCAGC GGTGATCGCTACACCCTGGGAGGGAGCGGgcaGCAGCAGCAGCAGCAGCA CCAGGAGGAGGAGGGAGAGGACCAGATGGAGATCGAGGAATGTGATGAAA GCCGGCTCTCTGTAGACGGCGGAGGAGTAGATGCCCGTCCGTCGGTGGTG GGAGTAAGGGACGAAGGAGTGGGCGAGAGGCGCAAAAGACAGAGGACGGG CAACGACATGGACCACCATAGCGACGACGACGGCAACCGCAAGAGCCGGT CGGGCAGCGGCGAAGACGAACAGGCCCGGGCCTTGGTGCGCGACGTGAGG CGGCGGTTTCACAGGTTCGGCGCCACCACCCCGGCGGCGCCTGGCGGCCG CATCGAGATCAACAACGCCGACCTGACCGAGCACCTGCGGGCGGTTATGC CGTCCTGCAGCAGGGAGAGCTGGGCAATACTGTCCGGACTGAAGGCGCGC CTGGCCTCCCAGCGGCGGCGTGCGGCAGACGCGAGACGGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:926952..932993+

>mRNA_Ecto-sp6_S_contig8.17029.1 ID=mRNA_Ecto-sp6_S_contig8.17029.1|Name=mRNA_Ecto-sp6_S_contig8.17029.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2370bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:926952..932993+ (Ectocarpus species6 EcLAC_371)
GGTCACTGGCAATTCATCTCGCAGCGGGTCCAGGCGTTCCACTTGCAGCT
GGCGAGCGAGCTACTACGGGCCCCCTCGCTTGCCAGCAAGACACCAACCG
AGATGGATAGGATTCGAACGTCCTTCGAACACGCCTGCCGAAGATCGATC
TCGAGGATACAGCTCGGGAACGACCCGGACCTTGCGCTCGGCAATAGCGC
CGAACGGATGTTCTCTGGCATCGTTCGGCTGCACAAATGCAGCATCCACC
AGGAGCTGAAAGAGGAATTCGGGCCCGCGGTGGAGACGCTGCTCATATTC
GTGGCGGTCGACAGCGTGAGCAAGCACGCCCTCCAAAGCTTCAAGGGGGC
CTTCTCAGCCCGCGCAGAGATAAACCGTCAGGCGTCCGCTGCCGACAAGC
CTCGCCGCAAGTTTCTACCCTCTGCCGCCGCAATCGCCGCCGCTGCCGCC
GCCGCCGCCGCCACTGCCACCAACCTCGAGGCCGAACGCCTGATGGCCTA
CCAAAACCACCAACAGCAACGGCTCCGAAAGGAGCTGCAACACCATCACC
ATCACCGCCACCAGCCGCGTCCCGGCGTCGTGAGGAAGGCCGCGGCTGCG
CAGCGAGCGGCGGTGGTTGGCTCAAATTCACGGAGAGCGACTGCGTCGCC
ATCAAAAGCGAAGGCGGCGAAGGCACCGAGGCTCTGCAGAACGAAATCGG
CTGGGAGTAGTGGCCACGGCAGCGGCGGTAGCAGCAGCGGCGGCTCCACC
CCTAGGGGAACCGGCCGCTATCGGGGGGGCGGGGGAAGGGGGGGCTGGAA
CACCGTGAGGCTACCGGAGGAGGACAGGAACGGGCTGCTCAAGCTGCCGT
GGGACGGCCTAGATGCGGTGAGCGAACAAGTCAAGCTCGTTACCGACGCC
AGGGTGCAGCTCATCGAAGAGCGCCGGCTTCGGCCCAGCTACGTGCCCCC
GCTCTCCCCCCGAGACTACCAATATTCTTCCGGAACCGGCGGCGATTCCA
CCGAAGAACCGGGGTCCCCTCAGGGCCACGACGACTCGGAGGAGGCGGAA
GAAGACGCCGAGGCTGCTGCCCGGCGGCGGGAGAAGCAGCCTTGGTTTGC
TAGGAACGTTGTCGATCACAGGTCGGCGTGGTGCGGCCTGAGGAATGCCG
GAGCACGCGCGGGGCTGCGGAAGGTGTTGCAGCCCCGCCCCTGGGGCGAT
CCGCTTGCTCCCTCCGGGGGTGGCCAGGAGGCCGCTAATAGCCAAGTCTT
GGAGCTCATATCAGCGGCCACCCAGGCTTACCTTAAGCGCGTCCTGACCG
AACTATCGGTGGTGGCCTACCAGCGGCGGGGAGGGTTGTCAGAAGAACTG
CTTCAAGGTCTCGAGGAGCGAATGGAAGACCCCCGGTCACCGGGCTCCGC
GCTCGTCCTGTACGAGGGACTGGTGCCTCGTTTCCCGCGCTACGAGTCCG
GAGGGAGTTCAACGACGATCACTACGGGGACACCGGCTGCAGCAGTGGCT
ACGACAACCGAGGACCCTCGCGAGGTGCTGCGGCGTGAAGAGGGGGCCCA
CAGACGGTCGTGCCTGGAGAGGGAGGCCGGCTGGGAGGCGAGGGTCGCGG
AGGTGATGGCGGCCGCAGACGGGGGGAGGAAATCGCGGAGCAAGCTCAGG
CCGTTTAGGGACGCGCCCTCGCAGAGGGTGGGCGTGGATTCTCTGTCGGC
GTGGTCCGAGTCCGGCTGGCTGTCGAGGGAACAGGTGGCGGCGAACGAGT
TCGCGAGGCGGGTGGGCTTCAGGAGGGGGGTGGGTCTTTCGATGCCGGCC
TCCGCGGAGTGGAGGCGAAAGAAGCGGATGGCGGAGGCGGCGGAAGCGAG
GGTTCGTGGAGGCGGTGGCGGTGGCAGCGGTGATCGCTACACCCTGGGAG
GGAGCGGgcaGCAGCAGCAGCAGCAGCACCAGGAGGAGGAGGGAGAGGAC
CAGATGGAGATCGAGGAATGTGATGAAAGCCGGCTCTCTGTAGACGGCGG
AGGAGTAGATGCCCGTCCGTCGGTGGTGGGAGTAAGGGACGAAGGAGTGG
GCGAGAGGCGCAAAAGACAGAGGACGGGCAACGACATGGACCACCATAGC
GACGACGACGGCAACCGCAAGAGCCGGTCGGGCAGCGGCGAAGACGAACA
GGCCCGGGCCTTGGTGCGCGACGTGAGGCGGCGGTTTCACAGGTTCGGCG
CCACCACCCCGGCGGCGCCTGGCGGCCGCATCGAGATCAACAACGCCGAC
CTGACCGAGCACCTGCGGGCGGTTATGCCGTCCTGCAGCAGGGAGAGCTG
GGCAATACTGTCCGGACTGAAGGCGCGCCTGGCCTCCCAGCGGCGGCGTG
CGGCAGACGCGAGACGGTAA
back to top