mRNA_Ecto-sp6_S_contig8.17028.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.17028.1
Unique NamemRNA_Ecto-sp6_S_contig8.17028.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig8.17028.1 vs. uniprot
Match: D7FYX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 5.970e-35
Identity = 212/220 (96.36%), Postives = 212/220 (96.36%), Query Frame = 2 
Query:   44 MAAEEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDVRSEIVAMMREASMSKDKDKLEGAIKKAEDAGLHFEASQGRRQLGRIVG 703
            MAAEEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAA XXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDVRSEIVAMMREASMSKDKDKLEGAIKKAEDAGLHFEASQGRRQLGRIVG
Sbjct:    1 MAAEEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAAGXXXXXXXXXXXXXXXXXXXXXSRNTARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPDVRSEIVAMMREASMSKDKDKLEGAIKKAEDAGLHFEASQGRRQLGRIVG 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYX2_ECTSI5.970e-3596.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:920831..923980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1690
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002800.1
Cds size663
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.1748605-UTR-Ecto-sp6_S_contig8:920830..9218141682350411.1748605-UTR-Ecto-sp6_S_contig8:920830..921814Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 920831..921814 -
1682350411.224898-UTR-Ecto-sp6_S_contig8:923937..9239801682350411.224898-UTR-Ecto-sp6_S_contig8:923937..923980Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig8 923938..923980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350411.1885111-CDS-Ecto-sp6_S_contig8:921814..9219791682350411.1885111-CDS-Ecto-sp6_S_contig8:921814..921979Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 921815..921979 -
1682350411.2077875-CDS-Ecto-sp6_S_contig8:922389..9227911682350411.2077875-CDS-Ecto-sp6_S_contig8:922389..922791Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 922390..922791 -
1682350411.216096-CDS-Ecto-sp6_S_contig8:923841..9239371682350411.216096-CDS-Ecto-sp6_S_contig8:923841..923937Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 923842..923937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.17028.1prot_Ecto-sp6_S_contig8.17028.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 921815..923937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.17028.1

>prot_Ecto-sp6_S_contig8.17028.1 ID=prot_Ecto-sp6_S_contig8.17028.1|Name=mRNA_Ecto-sp6_S_contig8.17028.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=221bp
MAAEEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAAG
ATTPTTSTNRAPPPPGPAGNNSRNTARARPAPTASNNRNPPAPPQAGGRG
GGRGNGVASASNSTAASQRGGGHANSGGGGERGGGGQEPAPGSAAAAAAA
AAAGLAAARAAAKAEPPPEPDVRSEIVAMMREASMSKDKDKLEGAIKKAE
DAGLHFEASQGRRQLGRIVG*
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mRNA from alignment at Ecto-sp6_S_contig8:920831..923980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.17028.1 ID=mRNA_Ecto-sp6_S_contig8.17028.1|Name=mRNA_Ecto-sp6_S_contig8.17028.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3150bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:920831..923980- (Ectocarpus species6 EcLAC_371)
CACTGCACACAGCCGCGAGAGCGGACGGCAGTGGTTTGATATCATGGCGG
CAGAAGAAGAGTTAGACAAGTACAAGCGCCTGTACGAGGAACAAAAAGCA
AAGGTGAAGGACTTGGAACGCCAGAACCTCCAGCTGAAGGTGGGTTAAAC
GAGAGATAGCGAGACGAAAAAAACGCGTTGTGCACCGGAGTACATGGAGA
ACGTGCAGAGCTACACGAGTAGCTGAGAGAGGGATAGCTTCAGCAACCTT
GCCTTTCTGGCCCACTTTCCTCTATAGGTGCCGCCACAGTAGTGGGCTGC
AGCTATTATTGAACTCGATGCAAAATCCCCTTGTGTTGCCGTGCCTTTGG
GCAGATATCTCTGGACACGCGGACGTGTTTCGTTGTAACCTTGCGTATGA
CGCCAAATACCACCCCCTCACGCGCCATTCAGCAAAGATCGCTCCGGCTG
TTTCTTGCAGATGCATGGGCGGCCGCATATATGTTGAAAAATAAGAATGG
TCGAACATTATCATGGCATAACACCGCGGGTGATGATTTCCCGGAGAGTG
ACCTGCGTCGCACATTAACTATGTATCGCGACGGCAATGTTCGGTTGCTC
TTGGAGGCAAGAATGTGCCGTTCGCACACACGTACCCTGCAACGGACGCG
CAGAAATTCGGATCAGACAAACGACGTGGGTAGATCAACCGTCACCTCCG
GCATTTGGGATAAAAAAATGACCGCAAGCAGACTCCCACCAAGGATCGGT
TTTTATCCCTGAGCGTGAGTATAAATGACCCGTCCCTGGGATGCCGTATT
GAGAATTGCCTCGGTGTTGAACGACGTGTGCATACCTTGATGCGTTTTGC
GAGCCCCCTTGCGCCAGCCTCCCCCATACGCCGTTTTCAGCATCACTGGC
AGCAGGGAAGAACGTGCAGAGCAACGGCGAAGGAAAACAAGTACCAATGG
ATAAGCCCAACAATTGAGCCCTCCCAAGTTGTCGGGTGCTGCCAGCACAA
ACAACGAGGGTATTGTTGTTGTCTTCACATTAAAAAACGTTCCGATCTCT
CTGTATGTCGCAAGTCGAAAAGGGAGAAAAAAGACGGGGAAATGTGCTTG
CCCCTGGTCGCCAGCCCCCCCCGAACACCGTGATTTTGCCGTTGACATGC
TGCACGCCCTTGACTCCGCCCGAAACCATACCCCCACAGGATACCGTCCA
GCACCTCATGGAGGTGGGCCGGCAGCAGGGATCAGCAGCCGGCGCCACCA
CCCCCACCACCAGCACCAATAGAGCCCCCCCGCCTCCCGGACCCGCGGGC
AACAACTCCCGCAACACCGCCCGCGCGAGGCCCGCACCCACCGCCTCCAA
CAATCGAAACCCCCCGGCGCCGCCGCAGGCGGGCGGGCGAGGAGGTGGGC
GGGGCAACGGCGTGGCGAGCGCTAGTAATAGCACTGCGGCAAGCCAGCGC
GGAGGGGGGCACGCTAACTCGGGCGGAGGCGGCGAGCGGGGAGGGGGCGG
GCAGGAGCCGGCCCCGGGAAGCGCGGCAGCCGCGGCGGCGGCGGCAGCGG
CGGGCTTGGCAGCGGCGCGGGCGGCTGCCAAGGCGGAGCCGGTAAGTTTC
CCTTTTATTTTGTTTCGGCCACCTGGCGGTAAAACCGGGAGGCACACTTT
TTTGGCTGCTGATGGAGGCAAGCTTGTGTATCGATGGCGATTGTGGCGGA
ACATTCAGCTGTCGCTGCGCGCTACACAAGAGAGGCGTCCCGCTTTTTAG
GCGATATTTTTCGAAGTCGTGGCCCAGATTGTCCTCCCTCGCCCTGTGCG
TGTTTCATGACGCTCACAGGGTTGCCCACGGTGAACATACGACCTACGAG
TAAGTATTCTTCCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
GTCTGTCTGTCTGTCTGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTATCTCTCTCTCTCA
GCCTCCGGAGCCCGATGTACGAAGCGAGATCGTCGCCATGATGCGGGAGG
CCAGCATGAGCAAGGACAAGGACAAGCTAGAGGGAGCCATAAAGAAGGCG
GAGGACGCCGGCCTCCATTTCGAGGCCAGCCAGGGGCGGCGTCAGCTGGG
CCGGATAGTTGGGTGATGATGACTTATGTATGATCACCGTCGTCGTCATT
TCTAGTGATGAGAGTTCCCGCGTTTATCGTCTGTGAGGGGACAGCTTGGC
TGGTACTGTTGTAATTGTGGAGTTGTGTGAGTTTCTAGACTAGGGGTCGG
ACGGGAGGGTAGTGAGTGGAGGGGCAGCAAGTCGGGCGGTGCACTGCAAC
GCCGCGGTGTTTGTTTTATTTACTCGCCCCCCCCGTTGGTATTGCGCATG
GTCTATACCTGTGCGCGTTGGGTGGGGGGAACGTGTGGGATGTAAAGGGG
CGGAGACAATCGGCGAACGTTTTTATGGCCAGCGGTTTTTCCGCCGCTCT
TTGCCTCTGTTGGAAATCACCCGCTTAGTAGTGTGCTGTAGAGGTGTTTG
TGTATGTAGCGGACTTCATGTGAGCGTCAACAAGAAGGGCCTGCGCGGGA
ATGTAGCGAGTAGTGCGTACCCCCAACGGCCCGGTGACTTTCGTGTGTGT
AGGCTACTGTTGTGAGACTACGCCCCAGCACGCGCGTGTCCCCCCACCGG
GCGCCACTACCACCGCAGTACTGCTGCTGTTGTGTGTGGCGATGGTTTTG
CCCTTCGTGGCGGAAAAGTAAGTACCAAGACATGGACAGATTAGAGAAAA
AGCTCTTGGCGTTTTTTTTCCTGCGGGCGGGTCTGCTAAGAGTCACACCA
CACGGCAGTGCGCTCAACCTTTCATTGTCCCGCCGCGTTCTCGCATTTCG
CATTCTCGATACACACGCGGACTCTTTTGTCACCCAATCAAGGAACAAAC
ACACCGGTCAGTGTAGGTAGGGCGTGTAACCGCTTTCGCGGTTCCCCCTC
GCGAGCCGACCCTGAAGCCAAACAGGCAAGAGGTATCAAGCGATGAGGGA
ATGGAAAGACAGCTTCCCCCAGTCTGGCACGGCACTGGCACGGGAGGCGC
TAGTCCTTCAATTGCTGGTGTCGCACGGGTTGTTTTCGCCCATGTTCACC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:920831..923980-

>mRNA_Ecto-sp6_S_contig8.17028.1 ID=mRNA_Ecto-sp6_S_contig8.17028.1|Name=mRNA_Ecto-sp6_S_contig8.17028.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:920831..923980- (Ectocarpus species6 EcLAC_371)
ATGGCGGCAGAAGAAGAGTTAGACAAGTACAAGCGCCTGTACGAGGAACA
AAAAGCAAAGGTGAAGGACTTGGAACGCCAGAACCTCCAGCTGAAGGATA
CCGTCCAGCACCTCATGGAGGTGGGCCGGCAGCAGGGATCAGCAGCCGGC
GCCACCACCCCCACCACCAGCACCAATAGAGCCCCCCCGCCTCCCGGACC
CGCGGGCAACAACTCCCGCAACACCGCCCGCGCGAGGCCCGCACCCACCG
CCTCCAACAATCGAAACCCCCCGGCGCCGCCGCAGGCGGGCGGGCGAGGA
GGTGGGCGGGGCAACGGCGTGGCGAGCGCTAGTAATAGCACTGCGGCAAG
CCAGCGCGGAGGGGGGCACGCTAACTCGGGCGGAGGCGGCGAGCGGGGAG
GGGGCGGGCAGGAGCCGGCCCCGGGAAGCGCGGCAGCCGCGGCGGCGGCG
GCAGCGGCGGGCTTGGCAGCGGCGCGGGCGGCTGCCAAGGCGGAGCCGCC
TCCGGAGCCCGATGTACGAAGCGAGATCGTCGCCATGATGCGGGAGGCCA
GCATGAGCAAGGACAAGGACAAGCTAGAGGGAGCCATAAAGAAGGCGGAG
GACGCCGGCCTCCATTTCGAGGCCAGCCAGGGGCGGCGTCAGCTGGGCCG
GATAGTTGGGTGA
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