mRNA_Ecto-sp6_S_contig8.16962.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig8.16962.1
Unique NamemRNA_Ecto-sp6_S_contig8.16962.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig8.16962.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 8.530e-8
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 MMLRGAGCWGSGGAAAGAVRERARGSVGEASQFSSRAADDDRR 129
            M LRGAGCWGSGGAAAGAVRERARGSVGEA++      +D RR
Sbjct:  166 MRLRGAGCWGSGGAAAGAVRERARGSVGEATRGGGVVEEDRRR 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig8.16962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4E8_9PHAE8.530e-874.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig8contigEcto-sp6_S_contig8:22096..23393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350401.0299385-CDS-Ecto-sp6_S_contig8:22095..221421682350401.0299385-CDS-Ecto-sp6_S_contig8:22095..22142Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 22096..22142 -
1682350401.0399976-CDS-Ecto-sp6_S_contig8:23296..233931682350401.0399976-CDS-Ecto-sp6_S_contig8:23296..23393Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig8 23297..23393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig8.16962.1prot_Ecto-sp6_S_contig8.16962.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig8 22096..23393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig8.16962.1

>prot_Ecto-sp6_S_contig8.16962.1 ID=prot_Ecto-sp6_S_contig8.16962.1|Name=mRNA_Ecto-sp6_S_contig8.16962.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=48bp
MMLRGAGCWGSGGAAAGAVRERARGSVGEASQFSSRAADDDRRHGGG*
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mRNA from alignment at Ecto-sp6_S_contig8:22096..23393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig8.16962.1 ID=mRNA_Ecto-sp6_S_contig8.16962.1|Name=mRNA_Ecto-sp6_S_contig8.16962.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1298bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:22096..23393- (Ectocarpus species6 EcLAC_371)
ATGATGCTGAGAGGGGCCGGGTGTTGGGGTAGCGGTGGCGCTGCAGCTGG
AGCTGTCCGGGAACGAGCGAGAGGCAGCGTCGGCGAGGCTTCACAGTGTG
GTGTCGTTGTCGAGGGTGAGTTGGGGGGTGGGGGCGGGGAGACTATTGCA
GGTGTACAAGGGCAGGATGTATGATGATCTCGGGTTTTAGTCTCGTGCGA
AGGGCCTGATCTCCCGTGCATTCACACAGACTGTTGGGGCGTAATAGTGG
GCATGATTCGAGTTTCGTTGGGGTTTTTTTGGCTTCACTTCAAATCAGCG
CTCACAGCACCAGTGCCGTTTACTCCAACCCGTGGTCACACAGAAGAGCC
CCTCTCCACCTCCCCTCCTGTGCACACACGAACTAGGGCTATCCACTAAA
TAGGCCAGGAGCGAAAGCGGAGAAAAACTAACCTCTATTTAGAAGGTTTC
GAGGATACCAACTAGACCACCGGGGCGACCGGTGTATACGCAGGCGTGCT
TGTCGTTGTCGTTCATGGATTGAACTTACCTGTTGAGTTTGTGTGACCAA
GGGCGTTGTGAGCTTGCACGTGCGGCAGCCGATGTGTGCCCGCCAGACCT
CCCCACCAATCCACGTGCTTCCAATGTGTATTTGTACACATTCACGGAGA
ATCATCTACCCATCTACGAGACTGAGCGTCGCTCCGTACAGAGGATCGCC
GCCGAGTTGCGAGGCACTCTACGGCGGTTCTTGCACATGCCACCACTTGT
TCTTGTACGACTATTCCTGTGTGTTTTTATTACTGGCGTCGACCACGCTA
ACCGCGTAGCCAATCAAACTACATCAGTCTCAGTGCGGCTAAGACGGGAG
AGCGTTCCTGGAGGTCATGGTCTAGTGTTTGTGCGTAGAATACATGAATT
CTATAGCGGGAAACAAGAAAATGCGAGCACGCTTTCGAGTTGGCTAGTTC
CACCGACCGGAAGGGCTGCATTTATTTTGTCAGCGGTGCGCTAACAGGCT
GACCAATATAAAAATGACAGCCTTGAAACGGCACAAAATTGAACCGCCAA
CAATACATGTTGTCACTAGGAGCCAGCTCGCATGGCCGCCTGTGTCCCCC
TCGTAATATTCGAAACCTCACAACCTAGCTTGTCGCCCCCCTTGTTGATT
TTTTTTCCTAGAGGGCACGCGGTGAACATGAAGCACCGGGAGAGGCCGCT
CTCATTCTCGGCACCTTAAAAAAACGTCGTCCCTTCCCCCGCGTCGAACA
GTCTCCTCCAGAGCCGCCGACGACGACAGGAGGCACGGCGGAGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig8:22096..23393-

>mRNA_Ecto-sp6_S_contig8.16962.1 ID=mRNA_Ecto-sp6_S_contig8.16962.1|Name=mRNA_Ecto-sp6_S_contig8.16962.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp6_S_contig8:22096..23393- (Ectocarpus species6 EcLAC_371)
ATGATGCTGAGAGGGGCCGGGTGTTGGGGTAGCGGTGGCGCTGCAGCTGG
AGCTGTCCGGGAACGAGCGAGAGGCAGCGTCGGCGAGGCTTCACAGTTCT
CCTCCAGAGCCGCCGACGACGACAGGAGGCACGGCGGAGGTTGA
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